Clarias gariepinus (North African catfish): 128527441
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Entry
128527441 CDS
T10780
Symbol
fan1
Name
(RefSeq) fanconi-associated nuclease 1
KO
K15363
fanconi-associated nuclease 1 [EC:3.1.21.-
3.1.4.1
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
128527441 (fan1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128527441 (fan1)
Enzymes [BR:
cgar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.1 phosphodiesterase I
128527441 (fan1)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
Other FA pathway factors
128527441 (fan1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAN1_TPR
VRR_NUC
Fan1_SAP
FAN1_HTH
BsuBI_PstI_RE
PRP21_like_P
zf-TRAF
Motif
Other DBs
NCBI-GeneID:
128527441
NCBI-ProteinID:
XP_053355764
LinkDB
All DBs
Position
7:21419848..21427958
Genome browser
AA seq
983 aa
AA seq
DB search
MGPKPGKSKSKDQARHLRRLSIAKKDDATLQKGPSITSFFKNTPPSKLACPLCGKFIPRF
KINEHIDSQCRDYLEENDMQTTAVSDDEQTKTSCLSSKSVPNCPDEEKNASMHANNQEAK
TSPYFKKSGMTRQESPNNNSHVGEVRIVSLGRLSSKLSKKALFPSEDSNGHSIQVSVKED
PVLSEPSSSQKENFENIHGKSEHVEMQSKLTSQVPTENLPHLEKIKQATPKKEPLGPGVS
KSADTSASLRFMKRKKEESPGACVTPVVQKKTKYSGKSSAESSSTDQLPEVVVSKSKHQD
VETNQIMTQDGSSDPPHNSSASPVEDSSPRRPYYLQNFLSVLETVLENQDDRCLFSEEEF
SSIQRFKQMSVPGQMLYVRLFQRKLKWLQVSKLDYTEISSDLNPVVQELVSSGFLQTESE
LTEIQDVLDILPAPELRSLAKTFHLGGPGNSSQKQQLVEGLLVLSKQRSLFSLAPGQSNT
GAVILKRAKKLAGSCVLLSRDPRSMFSRILLLFSLTDGLEEEEMASGGQGQLYTVFLVNS
GRLAFPTYTVQRSANIFRDREDLIRYETAMRIFQEVITAMQTGSWEEALVLYTSAKSNWQ
NLKQTYDLSWQEQLPVFLRCFTIGWAYTRILSRGVEILQRLRRYEDAVDELRSLLSQSVF
CPDSRGRWWDRLALNLQQHLKCHEQAIYAIRDGLNDPLVRTGHRLSLHQRATRMKESASF
KKHRLLLRDLPPFPINSVTQITIRGQLFPHEGGTGKSVFLRPAAGHEGSREGGDGMVMCS
VEELALAHYRELGFDQGIHGEGSTFSTLFGLLMWDIVFMNVFDVFRTPYQTCPLDLYTDC
FYENRKEAIAARAKLLSEASAETLQELLAEVWNSQEGRVCALVNWERFSCLQQAQSLVAC
LGGHFLSEIVLKMAKDYRHSKGGLPDLVVWNTSKNSYKLVEVKGPNDRLSQKQQIWLDEL
QKLGANVEVCHVTAFGARGARLE
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgggtcccaaacctggtaaaagcaaatccaaagaccaagccaggcatctaagaagactt
tctatagcaaaaaaagatgatgcaacactgcaaaaaggaccttctattacttcatttttt
aagaacacaccaccttcaaaactggcatgcccactgtgtggcaaattcatacctcgtttc
aaaatcaatgagcacatcgactctcagtgtcgagactatctagaggaaaatgacatgcaa
acaacagcagtctctgacgatgagcaaacaaaaacatcctgtctctcttcaaaaagtgtc
cctaactgtccagatgaggagaaaaatgcaagcatgcatgcaaataatcaggaggcaaaa
acaagcccatattttaaaaagagtggcatgacaagacaagaatcacctaacaacaattcc
catgttggagaggtcaggatagtcagtcttgggcgtttgtcttcaaaactctccaagaaa
gcgttgtttccatcagaggactccaacggtcacagcatccaagtttctgtcaaagaagat
ccagttttaagtgagccaagtagttcacaaaaagaaaactttgagaatatacatggtaaa
tctgaacatgtagagatgcaatcaaaattaacttctcaggtaccaactgaaaatctacct
catcttgaaaaaattaaacaggccacaccaaaaaaagaacctcttggtcctggagtgtct
aaatcagcagatactagtgcttccttaagatttatgaaaaggaaaaaagaggagtctcct
ggtgcctgtgtaactccagtcgtacagaagaaaacaaagtattcgggaaaaagcagtgcc
gaatctagcagcactgatcaattaccagaggttgtagtcagcaaatccaaacaccaggat
gtagaaacaaaccagattatgacacaggatggaagtagtgatcctccacacaattccagt
gcctcccctgtggaggatagttcacccaggcgcccatactatcttcagaacttcctgagt
gttttagaaacggtgctggagaatcaggatgaccgatgtctcttcagtgaagaagaattc
tcatctatccagaggttcaagcagatgtcagtgcctgggcagatgctgtatgtgcgtctg
tttcagaggaagttgaaatggctgcaagtgagcaaactggattatactgagattagttca
gaccttaatcctgttgttcaagagcttgtctccagtggatttctccagacagagtctgaa
ctcaccgagatccaagatgttttggatattttacctgctccagagctccgaagtctggct
aagacattccacctaggaggtccagggaacagtagccagaaacagcaactagtggaaggg
cttcttgttttgtccaaacagcgctctctcttttcgcttgcccctggccaaagcaacacc
ggtgcagtcattctcaaaagggcaaaaaagctagcaggctcctgtgttctcctgagtcgg
gatcctcgctctatgttctcccgcatccttttgcttttctctcttactgatggtctggag
gaggaggaaatggcatcagggggtcaaggccagctctacactgttttcctggtcaactct
ggacgtctggctttccctacgtacacagttcagcggtccgccaacatttttagagacagg
gaagacttaatcagatatgaaactgccatgcgaatctttcaagaggtgattacagcaatg
cagactggctcgtgggaagaagctctggtcctctatacttctgcgaaatcgaactggcaa
aacttaaagcaaacttatgacttaagttggcaggagcagttgcctgtgttcctgaggtgt
ttcactataggctgggcatatactcgtatactgtctcgaggagttgagatactacagagg
ctgcgtcgttatgaggatgctgtggatgagctgcgttcacttttatctcagtcagtgttc
tgtccagacagtagagggcgctggtgggacagactagccctcaatctccaacagcaccta
aaatgccatgagcaggctatctacgccatcagggatggactgaacgatccactggtccga
acaggtcaccgtttatcattgcaccaaagagctaccagaatgaaggagtcagcgagtttt
aagaagcaccggctgctcctccgagatcttcctccatttcctatcaacagcgttactcaa
attacaattcgaggccagcttttcccacacgagggtggtacaggcaaatctgtgttcctt
aggcccgctgctggccatgaaggctctagagaaggaggtgatggcatggtgatgtgctca
gtggaggagctggctctggcacactacagagagcttggcttcgatcaaggcattcatggt
gaaggttctacattctccactttatttggtcttctgatgtgggacattgtcttcatgaat
gtctttgatgtctttagaacaccctatcagacatgtcctctggatctatacactgactgt
ttctatgaaaaccgaaaggaggccatagcggcccgggctaagctgttgtctgaagcctct
gcagaaacactccaggagctgctggctgaagtgtggaattcacaggagggaagagtttgt
gcgcttgttaactgggagcgattctcttgtcttcagcaagcccagagcttagtggcatgt
ctgggaggacattttttaagtgaaatagttcttaaaatggcaaaggactaccgacacagc
aaaggaggacttcctgacctggttgtgtggaacacctcaaaaaacagttataagctggtg
gaggtgaagggccctaatgaccgtttatcccagaaacaacagatctggctggatgagcta
cagaagctgggtgctaatgttgaagtgtgccatgtcactgcttttggagctcgtggagca
cgactggagtag
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