KEGG   Clarias gariepinus (North African catfish): 128527714
Entry
128527714         CDS       T10780                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar04115  p53 signaling pathway
cgar04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    128527714 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    128527714 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cgar04121]
    128527714 (cop1)
Enzymes [BR:cgar01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     128527714 (cop1)
Ubiquitin system [BR:cgar04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    128527714 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     128527714 (cop1)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 zf-C3HC4_2 Beta-prop_RIG_2nd EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 Beta-prop_WDR90_POC16_2nd zf-RING_5 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st CREPT Beta-prop_NUP159_NUP214 UvrD-helicase zf-rbx1 WDR90_beta-prop_4th Sina_RING zf-RING_10 zf_C2H2_10 Tma16
Other DBs
NCBI-GeneID: 128527714
NCBI-ProteinID: XP_053356198
LinkDB
Position
1:41685217..41706115
AA seq 690 aa
MSGCRQQQQPGGTSGSVPGTSAGSTATANSANTGGSSANANGNGVSSRSLGSEAQLQGAQ
RSGHSKKRPLYNGLINPYEDKSNDFVCPICFDMIEEAHMTKCGHSFCYKCIRRSLEDSNR
CPKCNYIIDNVDQLYPNFLVNELILKQKQRCEEKRLKRDHPNGTKWQFFQDVLGTDQEHL
DLANVNYMLELLVQKKKQLEAESQAAQRQILMEFLKEARRNKREQLEQLQKELNFLEEDI
KSVQDMSGLYSPVMDMDPNLDSTVPQFGEAHSPAPSCSIIENTDYIQPPQFGASSQVNLP
KGKRQTSYNSTLASRRKRLTAHFEDLEQCYFSNRMSRITDDSRTVNQLDDFMECLSKFTR
YNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVIQDAVDIH
YPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDF
NLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPTSRYHLAFGCADHCVH
YYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLRSFKGHIN
EKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKKEDDTNEFVS
AVCWRALPDGESNVLIAANSQGTIKVLELI
NT seq 2073 nt   +upstreamnt  +downstreamnt
atgtcaggctgtcggcaacagcagcagccgggcggtacttcggggtctgtaccgggaacg
agcgcggggagcacggccactgctaacagtgctaataccggagggagcagcgctaatgct
aacggcaacggcgtttcttcacggagtctcggcagcgaggcgcagctccagggcgcacag
agatccggccacagcaagaagagacccctgtacaacggcctgattaatccgtatgaagat
aaaagtaatgatttcgtgtgtcccatctgtttcgacatgatagaggaagcgcatatgact
aaatgcggtcacagtttctgttataaatgtatacgacggagtttagaggacagcaacaga
tgtccgaaatgtaattacattattgacaatgtggatcagctgtaccccaacttcttagtt
aatgagctgatcctcaaacagaaacagagatgcgaagagaagcgactgaaacgggaccac
cctaatggaaccaaatggcagtttttccaagatgttcttggcacagaccaggagcatctg
gatttagcaaatgtcaattacatgttggagctgctggtgcagaaaaagaaacagcttgaa
gcggaatcacaagcagctcagcgtcaaatcctaatggagttcttgaaagaagctagaaga
aataagagagagcaactggagcaattacagaaagaattgaactttttggaagaggacata
aagagtgtccaggatatgagtgggctgtactcaccggttatggatatggaccccaacctg
gacagcacagttccacagtttggagaagcacactctcctgcacccagctgtagcatcatt
gaaaacacagactatattcagcctccccagtttggagcaagctcacaggtaaacttgcca
aagggtaaaagacagacatcatacaatagcactctggcctctcggaggaagcggctaaca
gcgcactttgaagacctggagcagtgttacttttcaaacaggatgtcgcgtatcacagat
gacagccgaactgttaaccagctggacgacttcatggagtgtctctccaagttcacacgt
tacaactctgtacgccctctggccactttgtcttatgcaagtgatctctacaatggctct
agtattgtttctagtattgagtttgaccgtgactgtgattatttcgccattgctggtgtt
accaagaaaattaaagtttttgaatatggaacagtgatccaggatgctgtggacattcat
tatcctgtcaatgaaatgacgtgcaactctaaaataagctgcattagctggagtagctac
cacaagaacctgttggcaagcagcgactatgagggaactgtgattctttgggatggattt
acagggcagaggtcaaaagtttatcaggagcatgagaaaagatgttggagtgttgatttc
aatcttatggatcccaaacttttggcttcaggctcagatgatgcaaaagtcaagttgtgg
tctactaacctggataactcagttgccagcattgaagctaaggccaatgtgtgctgtgtc
aaattcagcccaacatctaggtatcaccttgcatttggctgtgcagaccactgtgtccac
tactatgatttgcggaacactaagcagcctatcatggtcttcaaaggtcaccggaaggct
gtgtcctatgccaagttcgtcaatggagaagagattgtgtctgcctccacagatagccag
ctaaagctgtggaatgtgaacaagcctcactgcctgcgctctttcaaaggccacattaat
gagaaaaactttgtaggtctggcctccaatggagactatgtagcatgtggaagtgagaac
aactccctatacctgtactacaaggggctctccaaaacattgctgaccttcaagtttgac
actgtgaagagcgttctggacaaggacaagaaggaagacgacactaatgagtttgtcagt
gccgtatgctggcgggcattaccagatggggagtcgaatgtcctgattgcagccaacagt
caagggacaatcaaggtactcgagctaatttga

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