Clarias gariepinus (North African catfish): 128527849
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Entry
128527849 CDS
T10780
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128527849 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128527849 (sf3b3)
03041 Spliceosome [BR:
cgar03041
]
128527849 (sf3b3)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128527849 (sf3b3)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128527849 (sf3b3)
Spliceosome [BR:
cgar03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128527849 (sf3b3)
Complex B
128527849 (sf3b3)
Complex C
U2 SnRNP specific factors
128527849 (sf3b3)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
128527849 (sf3b3)
TFTC complex
128527849 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
128527849
NCBI-ProteinID:
XP_053356445
LinkDB
All DBs
Position
7:complement(18755647..18788228)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMTCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPTAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGAL
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVRLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRRFVIHPETNNLVLIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGNTLDLVLLEQNEAAFSVTVCRFANGG
DDWYVLVGVARDMILNPRSVGGGYIYTYRLVGGGEKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTSIHTIGQRVVVSDIQESLFWVRYKRNENQ
LIIFADDTNPRWVTTACLLDYDTMAAADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKADIIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacctgaccttgcagcgtgcaactggcatcactcatgccatccatggc
aacttctcaggtacaaagcagcaggagattgtcgtttctcgaggaaaaattctggagctg
ttgcggcccgatgcaaacactggcaaagttcacacgctgcttaccatggaggtgttcggc
atagtccgctctctcatggccttcaggctaactggtggcacaaaagactacatcgtggtg
ggcagtgattcaggtcgtattgttatcttggagtatcatccttccaagaacatgttcgaa
aaggtgcaccaggagacctttggcaagagtggctgtcgacgcattgttccaggacagttt
ctggctgtggatcccaaaggcagagctgttatgataggcgctatagagaagcagaaattg
gtgtacatcctgaatagagatgcagctgcacgcctcaccatctcctctcctctggaagca
cacaaggctaacacgctcgtctaccatgtggtcggagtagatgtgggttttgagaacccc
atgtttgcctgtctcgagatggattacgaggaagccgataatgaccccacaggggaagca
gcagctaacacacagcagactctgaccttctatgagttggacctgggactcaaccacgta
gtgcgcaagtacagcgaggctctagaagaacatggcaacttcctcatcacagttccaggt
ggctctgatggtccaagtggtgtgctcatttgctcagaaaactacatcacttacaagaac
tttggggaccagccggatatccgctgcccaatcccacgcagacggaatgacctggacgat
ccagagaggggcatgattttcgtctgctcagccactcacaaaaccaagtccatgttcttc
ttccttgcccagactgagcaaggagacatcttcaaggttaccctggaaacagatgaggag
atggtcacagagatcaggatgaagtattttgataccatccctgtggccactgcaatgtgt
gtactgaagactggcttcctgtttgtggcatcagagtttggaaaccattatctctatcag
attgcccacctgggtgatgatgatgatgaaccagagttctcttctgccatgcctctggag
gaaggagacacgtttttcttccagccacgaccacttaagaaccttgtgcttgtggatgaa
caggagaacctttcccctatcatgacctgccagatagctgatttggccaacgaggacaca
cctcaactgtatgtggcatgtggaagaggtccaagatctacccttagggtccttagacat
ggtctagaggtctcagagatggctgtatctgagcttcctggtaaccccactgctgtgtgg
actgtaaggaggcatgttgaagatgagtttgacgcctacatcatcgtgtccttcgttaat
gccacactggtgctttcaatcggagaaactgtggaagaagtgacagactcagggttcctg
ggtactaccccaactttgtcctgttctctgctgggggaagatgctttagtgcaggtctac
ccagatggcattcgccatatccgagcagataagcgtgttaatgagtggaagaccccagga
aagaagactattgtgcgatgtgccgtaaaccagaggcaggtggtcattgcactgactgga
ggagagctggtctactttgaaatggacccgtcaggtcagctgaatgagtacaccgagaga
aaggagatgtctgcagatgtggtatgcatgagcctagcaaatgttcctcctggtgagcag
cgctcacggttcctggctgtaggcttggtggataacactgtgcgcattatctccctagac
ccctcggattgtctacagccactgagtatgcaagctctgcctgcgcagccagaatcttta
tgtatcgtggaaatgggaggtgtggagaaacaagatgaattaggagagaagggtgcgctt
ggcttcctctacctcaacattggcctgcagaacggtgtgttacttcgtactgtgctggac
ccagtgactggagacctgtccgacactcgtactcgctacttgggctctcgaccagtacgg
cttttcagagtgcgaatgcagggccaggaggctgttttggctatgtccagccggtcatgg
ctgagctactcataccagtcacgcttccatctgacgccactttcctacgaaaccttggag
tacgcctcagggtttgcttcggagcagtgtcctgaaggcattgtggccatctctaccaac
actctgaggattttggctctggagaagctcggtgccgtgtttaaccaggtggctttccca
ctgcagtacacaccacgtagatttgtcattcatccggagaccaacaacttggtccttatt
gaaacagaccacaatgcctacactgaagccaccaaggcccagcgaaagcaacagatggca
gaggaaatggtggaggctgcaggagaggatgagagggagctggctgcagaaatggctgct
gcgtttttgaacgagaaccttccagaagcaatctttggtgccccaaaggctggctcagga
cagtgggcgtcactggtgcgcctgatcaaccccatccagggcaacactctggatttggtt
ctactggagcagaatgaggcagcctttagcgtgaccgtttgtcgctttgccaatggaggt
gatgactggtatgtactggtgggtgtagcaagagacatgatccttaacccacgctcagtg
ggcggtggttacatttatacctaccgcctggtaggagggggtgaaaaactggagtttgtg
cataagaccccagtggaggatgtgcccctggctattgccccattccagggcagagtgttg
gtgggggtgggcaaactgctgcgcatctatgaccttgggaaaaagaagctgcttcgcaag
tgtgagaacaagcatgttcctaatctggtgacgagcatccacactattggccagcgcgtg
gttgtatcagacatccaagaaagtctgttctgggtgcgctacaagcgaaatgaaaaccag
ctcatcatctttgctgatgacaccaacccacgatgggttaccactgcctgcctgcttgac
tacgacactatggccgcagctgacaagtttggaaacataagcattgtccgtttgccacca
aacaccagcgatgatgtcgatgaggatcccacagggaacaaagcattgtgggacagaggc
ttgctcaatggagcctcccaaaaggctgatataattatgaactaccacataggagaaaca
gtcctgtcactgcagaagaccacgcttatccctgggggctcggagtctctggtgtacaca
actctgtcaggaggcatcggcatccttgtgccctttacctcccatgaggaccacgatttc
ttccagcacttagaaatgcacatgcgctcagagtttcctccactttgtggccgagaccat
cttagcttccgttcttattacttccctgtaaagaatgtaattgatggagatctctgtgag
cagtttaactccatggatccccataagcagaaaagtgttgctgaggagttagaccgcaca
ccacccgaagtgtctaagaaactggaagacatccgcacacgttatgccttttaa
DBGET
integrated database retrieval system
