Clarias gariepinus (North African catfish): 128528534
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Entry
128528534 CDS
T10780
Symbol
pcdh7b
Name
(RefSeq) protocadherin-7b isoform X1
KO
K16498
protocadherin delta 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128528534 (pcdh7b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgar01009
]
128528534 (pcdh7b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128528534 (pcdh7b)
Protein phosphatases and associated proteins [BR:
cgar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128528534 (pcdh7b)
Cell adhesion molecules [BR:
cgar04515
]
Cadherins
Protocadherins
128528534 (pcdh7b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
LYRIC
MLANA
Mid2
Motif
Other DBs
NCBI-GeneID:
128528534
NCBI-ProteinID:
XP_053357386
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All DBs
Position
1:complement(28906415..29048796)
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AA seq
1247 aa
AA seq
DB search
MRNTGSTDCLCYCFLLLQLLTQPAAKQVLRYRLAEEGPADVRVGNVAADLGIVAGSGEVT
FTLESGSEYFKIDNITGDLSTNERRIDREKLQQCLMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
SGESSVRRIGSGGSANVDSHMGKRRFDDSASRSSVFELQVADTTDGEKQPQLIIKGALDR
EQRDSYELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKSVYEADLPENSSPGAPIL
QLKAIDADVGVNGQIEYVFGAATESVRRLLRLDESTGWLTVLHRIDREEVSQLRFMVMAR
DRGQPPKTDKATMIINIKDENDNVPNIDIRKIGRIYLRDGVANVAEDVVVDTPIALVQVS
DRDKGPNGIVTCTVVGDVPFQLKPASEIEGDMNKKKYFLHTSAPLDYEAVQEYNVVIVAV
DSGSPSLSANNSLIVKVGDMNDNPPIFSKSTMEVSFSENNGPGERVLTVVALDADSGKNA
ELSYSLDSSVNGIFSIDPDSGDIRVNTILDREQTERYEFKVIAKDKGIPVLQGSATVVVL
VADKNDNEPKFMQDVFTFYVKENLQPNSPVGMVTVMDADKGHNAEMSLYIEEEEEIFSIE
NNTGTIFSTVAFDREQKTTYSFRVKAVDGGDPPRSATATVSLFVMDENDNPPTVTFPLNS
SYTLLPPSSSLRTVVRTVIATDTDTGVNADLSYSIVGGNPFKLFEIDPGSGVISLVSKLE
QKHYGLHRLVVQVNDSGFPSQSTTTLVHVYVNETLSNSTIVEAKIAKSLGTPLNADIAGD
PNYDLGKQRLSIAIGVVSGIMTVILIILIVVMARYCRPKNKNGYEAGKKDHEDFFTPQQH
DKSKKPKKDKNKRKTKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPG
SPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISIGSDHCSEYS
SQTLNKYNKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLDESETPSSKSSTGPRLGALPL
PEDAYERTTPDGSVGEAEHMENDSRPLPDVAMTGKCTRECDEYGHSDACWMPVRTSPERR
PKATPPKLSTFNSSSAGCSGAEPATSTDPLAVANGEPSHLLGDRNRNLLNKKLASSSSSS
SAYDAFSSATFSSSEETSRPVEEIPLAPTGEYKPTQCGTLTRREVYL
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgaggaataccggctcgacggactgcctctgctactgctttctgctgctgcagctgctg
actcagcccgcggccaaacaagtgctgcgataccgcctggctgaggaaggtcccgccgat
gtgcgcgttgggaacgtggctgctgacctcggcattgtcgccggatccggagaagtcact
ttcactcttgaatctggctctgagtacttcaagattgacaacatcaccggcgacttaagc
accaacgaacggcgcattgaccgcgagaaactgcagcagtgtctgatgatattcgacgag
aacgagtgcttcatagactttgaggtgtccgtgatcgggcccgcgcaaagctgggtagac
ctgttcgagggcaaggtcatcattttggacataaacgacaacacgccttcgttcccgtca
cctgtgctcactctctctgtggaggaaaacaggccgatcggcacgctttatctcttgccc
acggccactgacagggattttggcagaaacgggatagaaaggtacgagttgattcaggac
agcggagaaagctccgtgcgcaggataggctctggaggctctgctaatgtcgactctcat
atgggcaaaagaagatttgacgacagcgcgagtcggagtagcgtctttgaacttcaggtc
gcggacacaacagacggagagaaacagccgcagctgattattaaaggcgcactggacaga
gaacagcgcgactcttacgagctgactctgcgtgttagggacggcggcgaccccccgcgc
tcctctcaagccatccttagagtaatgattacagatgtgaatgacaacagcccgcgtttt
gagaagagtgtatatgaagcagacctacctgagaacagctcccctggcgcccccatcctc
cagcttaaggcaatagatgctgatgttggggttaatggccagattgaatatgttttcggg
gcagccactgaatcagtgcggcgactgctgcggttagatgagagcacagggtggcttact
gtattacataggattgatcgtgaggaagtaagtcagctgcggttcatggtcatggcccgt
gatcgtggtcagcctcccaagacagacaaggcaacgatgattatcaatatcaaagatgaa
aatgacaatgtcccaaatattgacataagaaaaattggacgtatttacttgagagacggt
gtggcaaatgtagcagaggacgtagtggtagacacacctatcgcgctagtgcaagtgtct
gatcgtgacaaggggccgaatggtatcgtgacatgcacagtggttggtgatgtgcccttc
caactgaagcctgcgagcgagatagagggtgacatgaacaaaaagaaatatttcctgcac
acgtcagcgcctcttgactacgaagccgtgcaggagtacaacgttgtcatagttgctgta
gattcaggcagccccagtctgtctgcaaacaactcattaattgtgaaagttggagacatg
aacgacaatccacctatatttagcaaaagcacaatggaggtctcgttttcagagaacaat
ggtccaggtgaacgtgtattgactgtagtggccttggatgcagacagtggtaaaaatgca
gaactctcatactcattggactcatctgtcaatggaatattttccattgatccagacagt
ggtgatattcgtgtgaacacaatacttgatagagagcaaacagagcggtatgagtttaaa
gtaattgccaaagacaaaggtatacctgttttacagggctcagctacagtggtggtactg
gtggcagacaagaacgacaatgaaccaaagtttatgcaggatgtttttaccttctatgta
aaggagaacttgcaacccaacagccctgtaggcatggtaacagtaatggatgcagacaag
gggcataatgctgagatgagcctctacattgaggaagaggaagaaattttttccattgag
aacaacacaggaaccatcttttctactgtggcctttgaccgtgaacagaaaaccacatac
tcattccgtgttaaagctgttgatggtggggacccacctcgatcagccacggccaccgtt
tcgctttttgttatggacgaaaatgataacccaccaacagtcacttttccccttaacagc
tcctacactctgttacctccatccagcagtttgagaacagtcgtccggactgtcatagct
actgatactgacacaggtgtcaatgctgatctcagctacagtatagtaggaggcaacccc
ttcaagttatttgaaattgaccctgggagtggcgttatttcattagttagtaaactggaa
cagaaacactatggccttcaccgcctagtagtgcaagttaatgacagtgggtttccatcg
cagagtaccaccacgctagtgcatgtctatgtcaatgaaacactctctaactccacaata
gtagaagccaaaattgccaaaagcctcggtacacctcttaatgccgacattgcaggagac
cccaactatgacctgggcaagcagcgtttaagcattgctatcggagtggtgtctggcatc
atgactgtcatcctcatcatcctcattgtggtcatggcccgctactgcaggcccaagaac
aagaatggctatgaggctggtaaaaaagaccatgaggacttttttaccccacagcagcat
gacaagagcaagaagcccaaaaaagacaagaacaaaagaaagactaagcagcccctgtat
agcagtattgtcacagttgaggcatcaaaacctaatggacagcgatatgatggtgtcaat
gagaaactctctgacagtcctgggatggggcgttatcgctctgttaatggtgggcctgga
agcccagaccttgcccgccactacaagtccagctcacctttacccactgttcagcttcat
ccacagtctcccacagcaggaaaaaagcaccaggctgtccaggatctgccgccggccaac
accttcgtgggcaccggagataacatatccattggatccgaccactgctctgagtacagc
agccaaaccctcaacaagtacaacaagcagccattccgccgagtgacgttctcggtggtg
agccagccccaggaccctcaccagggctctctgcagagctgctacgacagtggccttgac
gagtcggagacgccgagcagcaagagctccacaggcccccggctgggagccctccccctc
cccgaggatgcctatgagaggaccacgccggatggcagtgtcggtgaggcagagcatatg
gaaaatgactctcggcccctgccggatgtagccatgacgggaaagtgtacacgcgagtgt
gatgagtatggccactcagatgcctgctggatgccggtgcgcacttcacccgagcgcagg
cccaaggccacccctcccaaactctccaccttcaactccagctcagccggatgcagcggc
gctgaaccggccacgagcactgatccacttgccgtggccaatggagagccctctcacctg
ctcggagaccgcaatcgcaatctcctcaacaagaaattggcctcctcctcttcctcctcc
tcggcctacgacgctttcagctcagccaccttctcttctagtgaggaaacatctcggcct
gttgaagagattccactggcacccacaggcgaatataaacccacgcaatgcgggacactt
accaggcgtgaggtttacctgtga
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integrated database retrieval system
