Clarias gariepinus (North African catfish): 128529037
Help
Entry
128529037 CDS
T10780
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC3 isoform X1
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128529037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128529037
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
128529037
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
HECT type E3
128529037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
EKLF_TAD1
Motif
Other DBs
NCBI-GeneID:
128529037
NCBI-ProteinID:
XP_053358313
LinkDB
All DBs
Position
8:1169672..1213537
Genome browser
AA seq
1044 aa
AA seq
DB search
MLCWGSSALGQLGLAVPEAAVFEPRSCCVFDGRGLKEVACGGQHSLFLMHDGSVYTCGSN
SHRQLGHERPGGKPELVGALDAQKIAGVACGQAHSLALSEQGQVFAWGAGEWGQLGLGTA
EEAVRVPRLIKKLCEHQISQVMCGNQHCIALSKDGQLFTWGQNSSGQLGLGKGEPSSLSP
QPLKSLCGIPLGQISAGGDHSFALSLSGAVFGWGRNSAGQLGLNDEQDRGVPCHIKFLRS
QKVVYISCGEEHTAALTKDGGLFTFGNGSRGQLGHGSTNNEPLPRRVLELMGTEVSQIAC
GRHHTLAFVPSTGLVYAFGCNAQGQLGLGPRGNSMIPLPVRNIHPPVLTNTPTGTDQYSI
SRIHCGGDHSFLVLSRGKSCPEDFRVISTSKSISLINKESLNSWRLKLMDSTDSSNTNDI
ILLLSSTACWNASFLDQSDDVHFKTNPKVPGIDLNSVRLLFEILMKPAYSRLLEQTMKSF
ESLLIPQLPCSPPDVEAMRIYLILSECPALHESKNFISLTIPLAMAILRLDANPSKVLDN
WWSLLDGEVFSRLVEMYKSIVVFLLTGGKALLIPVFLESYISATLKLLEKLHKVNQKAHH
VEYNCFYIPDITSLVDIQEDYLKWFLSKAEIKMRSPPVQNSVTLCAYPFILNAQAKTTML
QTDAELQMQMAVSGANLHNVFMLLTLEPLLAQNPFLVLHVRRDHLVSDALRELTIYNDVD
LKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELMDPVYGMFTHYPESNLLWFSDKCFVEHN
WFHLIGIICGLAIYNSTVVDLHFPLVLYKKLLDVPPALDDLKELSPTEGRSLQQLLDYEE
DDIEDAFCLNFAISREYYGVTEVKELVPGGENRTVDKSNREEFVQAYLRYVFSESVRELY
SAFASGFLKVCGGRILSLFQPSELMAMVVGNSSYNWEELEKNASYKGEFSASHPTVQMFW
EVFHEFPLEKKKQFLLFLTGSDRIPIHGMSSLRIIIQSTSAEEHFLPVAHTCYNLLDLPC
YRSKETLHSRLTRAIEQYEGFSLV
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggcagttcggctttgggtcagctcggcctcgccgtccccgaagccgcc
gtgtttgagccgcggagctgctgcgtgttcgatggcagaggactgaaagaggtggcgtgc
ggcgggcagcactcgctgttcctgatgcacgacgggagcgtttacacgtgcgggtccaac
agtcacagacagctgggacacgagaggcctggaggcaagcctgagctggtcggggcactg
gatgcccagaagattgcaggtgtcgcatgtgggcaggcccactctctggccctgagtgag
caggggcaggtgtttgcgtggggagcgggcgagtgggggcaactcggtctcggcacggca
gaggaagccgttcgggttcccaggttgattaagaagttgtgtgagcatcagatctcacaa
gtcatgtgtggcaaccagcactgtatcgcactttctaaagatggtcagctgttcacgtgg
ggtcagaactcgagcggtcagctgggtttagggaaaggcgagccgagctctctgtctcct
cagcccctcaagtctctgtgtgggatcccactgggtcagatcagcgcaggaggagaccac
agcttcgccctgtctctctcgggggccgtgttcggctggggcaggaacagcgccgggcag
ctgggcctcaatgatgagcaagatcggggcgttccctgccatattaaattcctgcgctca
cagaaagtggtctacatcagctgcggggaggagcacacggccgcgctgaccaaggatgga
ggtctgtttacgtttggaaatgggtcgagaggacagctggggcacggctccaccaacaac
gagccgctgccacgcagggtcctggagctcatgggcaccgaggtgtcccaaatcgcctgt
ggcagacaccacacgctggcgttcgtgccctccaccggcttggtgtacgccttcggctgt
aacgctcagggccagctcggcttagggcccagaggcaactccatgatcccgctgccggtc
cgaaacatccaccctcctgttctcaccaacaccccaacaggcacagatcagtacagcatc
agcaggattcactgcgggggcgaccacagctttttggtgctgtcacgtggcaagagttgc
ccggaggatttccgcgttatcagcacatcaaaaagcatctccctgattaataaggaaagt
ctaaacagttggaggctgaagctcatggacagcactgactccagcaacacaaatgacatc
atcctgctgttgtcctcgaccgcgtgttggaacgccagcttcctggaccaaagcgatgat
gttcatttcaaaaccaaccccaaagtcccgggaatcgacctgaactccgtcaggctgctg
ttcgagatcctgatgaagccggcgtactcgcggctgctggagcagaccatgaagagtttt
gagagtctgctgatccctcagctcccctgctctcctcctgacgtagaggccatgcgcatt
tacctgatcctgtccgagtgtcctgctctacacgagtccaaaaacttcatctcgcttaca
atcccgctcgccatggccatcctccggctggacgccaaccccagcaaagtgctcgataac
tggtggtcactgctggacggtgaggtcttctccaggttggtggagatgtacaagagcatt
gtggtgttcctgctcacgggtggcaaggcccttctcattcctgtgtttctcgagagctac
attagcgctacgctgaaactgctagagaaactacacaaggtgaaccagaaagcccaccat
gtggagtacaactgcttctacatccccgacatcaccagcctggtggacatccaggaagac
tacctcaaatggttcctaagcaaagctgagattaaaatgcggtctcctccagtacagaat
tcagttacgctatgcgcctatccgttcatattgaacgctcaagctaagacaaccatgttg
cagacggatgccgagctgcagatgcagatggcagtcagcggagccaacttgcacaacgtc
ttcatgctgttaaccctggaacccttgctggcacagaacccgtttctcgtcctgcacgtg
cggagagatcacctggtcagcgacgcgctacgtgagctcaccatctataatgacgtcgac
ttgaaaaagcccctaaaggtgattttcgacggagaggaagcggtggacgcaggaggagtc
actaaagagttcttcttgctgcttctgaaagagctgatggatccggtctacggcatgttc
acccattacccagaatccaacctgctctggttctccgataaatgttttgtcgaacacaac
tggttccacttgatcgggatcatctgtggcctggctatatacaactccaccgtggtggac
ctgcactttcctctcgtgctctacaagaagcttctagatgttcctcctgcgctcgacgac
ctgaaggagctgtcccctaccgagggcagaagtctccagcagctgttagactatgaggag
gacgacatcgaggacgccttctgtctcaattttgctatcagccgagagtattacggggtg
acggaggtgaaggagctcgtccctggaggagagaacagaaccgtggacaagtccaacaga
gaggagtttgtgcaggcgtatctgcgctacgtgttcagtgagtcggtacgcgagctttac
tctgcgttcgccagcggcttcctgaaggtgtgtggaggtcgcatcctctctctgttccag
ccctctgagcttatggccatggtggtcggcaacagcagctacaactgggaggagctggag
aagaacgccagctacaaaggcgagttctcggcttctcaccccacagtgcagatgttttgg
gaggtgttccacgagtttcccctggagaagaagaaacagttcttgttgttcctcacaggc
agcgaccggatccccatccacggcatgtccagcctgcgcatcatcatccagtccacgtcg
gcggaggagcacttcctgcccgtcgctcacacctgctacaacctgctggacctgccgtgc
tacaggagcaaagagacgctgcactcgaggctgacgcgcgccatcgagcagtacgaaggc
ttcagcctggtgtga
DBGET
integrated database retrieval system
