Clarias gariepinus (North African catfish): 128529039
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Entry
128529039 CDS
T10780
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
KO
K22372
E3 ISG15--protein ligase [EC:2.3.2.-]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128529039
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
128529039
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40_RLD
HECT
RCC1
RCC1_2
Alsin_RLD
Motif
Other DBs
NCBI-GeneID:
128529039
NCBI-ProteinID:
XP_053358315
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All DBs
Position
8:782163..798473
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AA seq
1026 aa
AA seq
DB search
MFFSWGDSSRGQLAIPGSGGNGITTPTSVHSTEQLVGISCGEQHTLFLTVGGQVLSCGRN
SKGQLGRSKTRDTHLPVKIDGLGAVAAVACGQDHSLALCDSGQVFSWGAGGEGQLGHSSP
VAKCPKPVPVQIRLPFQIPVVQVACGNFHSLALSKGGEVFSWGQNKYGQLGLGKSVELQP
DPSLVRFLVGVPVTQIAAGGAHTLALTLSNQVFCCGANSVGQLGLNRTDVKGRFAVCAVP
ALKNLGVSSISCGAAHTAVLTKAGEVYTFGEGTHGQLGHGSTNNELLPKKLAGIDGSAKQ
VTCGSHHTLVLMPSGILFTFGRDFQGKASGDTKNSLQPVKLEGDWNGTEARTHTEMKISS
GWSSNFIFFPPSKTNFLGDPIGKLEEAQVQRWVTTLESDRSIKEIKREVSLTFATSSNLI
ACFLKDRSSSHGIQVDLNAASQTFDQLLKIAWIKNSVEMSIKQVVPILFHSAPVMRCPEI
FLLLPTCSVLHDQQNVIDLVLLLAVTIRDLSETATKSLKEYWSSMDASIMTKHICMWKQA
LIFLLKSNVWLNYIPGVNAVLEVLKLLYRGNRRAERSRQVALTEFYIEELGISPPFLQRD
VTLWRQIKWGQVLEVETTPAILCRYPFLLDLKSKILILLYVASITQMVHQLIHKEVAAQR
MFHELYTGEVPTPIFQLKLRRTALLEDMFRQLDNADHDNFKKALVVQFVEDSKVTAVNKR
DFFLHAFNELLAHESGMFMYNDNETMIWFPAKPTHESKRYFLFGILCGLALCNDNIVHMP
FPMAMFKKLISVKPTLEDLTEFSPQVGRSLQYLLIDYTDDDAENMDMTFRVHWDGEDVEL
DPHEREKRVTSANKKEFVEAYIDYALNKSVERVFNEFKRGFYKVCDEDVVNFFQPEELRG
VMVGTEEYDWDTFRQNTVYAGQYHVKHPTIVAFWEVFEELTDKQKKAFLLFLTGCDRVPI
LGMEAVKMTMLDRPNFTQEHLPESLTCHSYFMLPPYENKQRLEAKLIEAINHNRGFWIEE
TKPAEI
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgttcttctcctggggcgattcatccagaggacagcttgccattccaggatctggaggg
aatggcatcaccacaccgacttcagtccactctactgaacaacttgttgggatctcctgt
ggagaacagcacactttattcctgacagttggtggacaggtactgtcctgtggccggaac
tctaaaggacagctgggacgatccaagaccagagacacacacctgccagtgaagattgat
ggcttgggagctgtagctgcagtagcatgtgggcaagaccacagtttggctttgtgtgat
tcaggtcaggtgttttcctggggagcaggtggagaagggcagctgggtcacagcagccct
gtggcaaaatgtcctaaacctgtaccagttcagataaggttacctttccagatcccagtg
gtgcaggtcgcttgtggaaatttccattctttggctctaagcaagggaggtgaagtcttt
tcgtggggtcagaataaatatgggcagctgggactggggaaatcagtggagttgcagcct
gatccttctctggtacgatttcttgtcggagttcccgtcactcagatcgccgccggtgga
gctcacaccctggcactcactctttcaaatcaagtgttttgctgtggagctaacagtgtt
ggtcagctgggccttaacagaactgatgtaaaaggccgatttgcagtatgtgcggttcca
gctttgaagaacttgggagtttcttccataagctgtggagcggctcacaccgctgtcctc
actaaggctggagaagtgtacacattcggagagggaactcatggtcaacttgggcacggc
tccaccaataatgagcttctacccaagaaactcgcgggcattgatggatctgctaaacaa
gtaacgtgtggcagccatcacactttggttctgatgccatctggtatcctcttcacattt
ggccgtgatttccaagggaaagcaagtggtgatactaaaaacagcctgcagcctgtaaaa
ctagaaggagactggaacggcacagaagcaaggacacacacagaaatgaagatatcatct
ggctggagttccaactttattttcttcccaccttccaagaccaattttcttggcgatcca
attggaaaacttgaagaggcacaagtgcagagatgggttacaacattggagagtgacaga
agcattaaagaaatcaaaagggaggtttccttgacctttgctacaagttcaaatctcatc
gcctgcttccttaaagacaggagctcctcacacggtattcaggttgatttaaatgctgct
agccagaccttcgatcagctcctgaagattgcctggatcaagaattcagttgagatgagc
atcaaacaagtggtgcccatactttttcactctgcaccagtgatgaggtgtcctgagatc
ttcctgctcctgcccacatgctctgttcttcacgaccaacagaatgtgatagatctggtg
ctgctgttggctgtaaccatcagagacctctctgagactgctacgaaaagcttgaaggag
tactggtcctccatggatgccagcattatgactaaacatatctgtatgtggaaacaagca
ctcatcttcctcctgaagtccaatgtgtggttaaattacattcctggagtgaacgcggtg
ctcgaagtcctcaagttactttacaggggaaacagaagagctgaaagatcgaggcaggtt
gcgcttactgagttctacatagaggagctaggcatctcacctccgtttcttcagcgggac
gtgacactgtggaggcaaattaaatggggacaagttctggaagtggaaactactcctgct
atcctctgtcgatacccatttctcctggatctgaagagcaaaatcttgatattactctat
gttgcatctataacgcagatggttcatcagctcattcacaaagaggtggcagcccagagg
atgtttcatgagctatacaccggggaggtaccgactcccatctttcagctgaaactgaga
cgcactgccttacttgaggacatgtttagacagcttgacaacgctgaccatgacaacttc
aaaaaagcattagtggtgcagtttgtagaagactccaaagtgactgcagtcaacaaaaga
gatttctttctccatgcctttaatgaacttttggctcatgaatcagggatgtttatgtac
aatgacaacgaaacaatgatctggttccctgcaaagccaacgcatgaatcaaagcgatac
tttctgtttgggattctctgtggcctggccctctgcaatgacaacatagtccacatgccc
ttccctatggcaatgtttaagaagctgatcagtgtaaagcccactctggaggatttaact
gaattcagtccacaagttggcaggagtttgcaataccttttaattgactacacagatgac
gatgctgagaacatggacatgactttccgtgtgcactgggatggtgaagatgtggagctg
gacccccacgaacgtgaaaaacgtgtgacaagtgctaacaagaaggagtttgtggaggcg
tatatagactacgccttaaacaagtcagtggaacgagtgtttaatgagtttaagagagga
ttctacaaagtgtgtgatgaggacgtggtgaatttcttccagccagaggagctcagagga
gtgatggtgggaacagaggagtacgactgggacactttcagacagaatacagtctatgcc
gggcagtaccatgtgaaacaccccactatcgttgctttctgggaagtttttgaggagctg
acagataagcaaaagaaagcctttctcttgtttctaacaggctgtgatcgtgtgcccatc
cttgggatggaggcggttaagatgaccatgttggaccgtcctaacttcacccaggaacat
ctgccagagtccctcacctgccactcatatttcatgctccctccatatgagaacaagcag
cgtctggaagcaaaactcattgaagcaataaatcacaaccgaggcttttggatagaagag
acaaaacctgcagaaatataa
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