Clarias gariepinus (North African catfish): 128529117
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Entry
128529117 CDS
T10780
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128529117 (col17a1b)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128529117
NCBI-ProteinID:
XP_053358429
LinkDB
All DBs
Position
8:14257628..14279395
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AA seq
1511 aa
AA seq
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MDVLTRLSDNSRGSSGERVISETITSTRLTSLPPKGFSGSSSKSMSSSTWGSSFEKNILN
QNSSTSYLPSSSLSVNAGGSGLDYALFLGDDSIGKSRSGGGRADSAGFESLYGRDSGLRS
RSSSSGGVRKTQDSSSSITHSPMFLERKTTISHSGGYDGSSSANSSPELTRKDYGATRGR
SQTRESEIRVRLQSASPSTKWTELDDVKKLVKSGRSSSVSPTRSTASSTLPVPRKAKVEA
KVVKQGTQTASGQYDTTILESALPSYTWTSSTLPSNASSTTAFAYQGSANNMSPGSSLLN
TTSPSSLSVYGFQNNLATPSSTLLTSNTINTHSGYGVQKNISQNTGSAGLVSTGVTASTG
TTTRSVNDDMPKKYIILEKENIPSKKDTEVLILSKDSGKQFSSSQTYRKGGSVSDVSLKK
ETLASSYTETVPVKLSSGSYYGSSSTPTKDKATYAEIYKGKNYEKEGSGCFGCGPSCCSW
WKWLLGLLLSLLLLLGLLFGLIALAEEVKKLKGRVDELQSLVQGNSARTSRLTGNNVYAQ
RGASYMEGDSENTLNQGAATFSNPEDLKRTIQSLLQKEMQSETFRASLASSLKGERGLPG
LKGDTGSPGPKGDNGFPGIPGPPGTVGHPGPEGPKGQKGSAGEHGAEGAPGLRGRDGSPG
PRGETGPAGFGEKGERGSPGEPGTRGPPGPSGPPGPKGSAGVNGLSGAPGEPGPQGFRGE
AGPAGPKGDRGLPGPQGIKGDHGEKGDHGVPGFPGPPGKAGLNGEKGTKGSTGASGADGE
KGQRGDQGPIGMPGIRGPAGPPGDIGPQGSPGLQGPPGIAGLPGQPGVKGDNGEPGRVIN
AAGSSSVSIPGPPGPPGPAGPAGPPGLSGPVGPAGIPGQPGAKGEKGDQGEEGITVERSS
KKESFSSMDTNQVIQGPPGPPGPPGPPGAPGYGTPGQRGEKGERGEPGSFVPNSGTFFAG
PPGPPGPAGPKGETGSQGPRGYQGDPGQPGLPGRPGGSGETRLAAYNGAQGPPGPPGPPG
PQGQQGAKGDSGIPGAPGIPGTARGSGSVGSPGQPGPPGPPGPPGTPGHSGSTTDYRRFI
IDYMQSDSMRQHLSGFQGPPGPPGASVSVEEVASRVIAYIQHSGLSGSPGPQGPPGPAGS
VSVSDIIALLQRDDVRRYVIGPPGPPGPSGSVNMANFDTQEVANYVLRIMNDRGLISRTG
PPGPPGPPGHPGSPGQPGATYSDITALIERSGFSGGLQGPPGPPGRQGPPGPVGPPGAPG
SSSSGYRLEEVQAYIQNSGLRGPPGPPGPPGPPGLAGDSRTLASHDRASQRAYIRAELQD
YLSSDSMRRYISGLPGPPGPPGPRGEKGDRGDSGHSAGSGYYYATDRNGVRLAETDYSNV
ALKVTDYIRNQGLLQEINDNYWRSHSTGIQGPPGPPGPPGHSGYSRVFATYGNVTADLMD
FFRLHGTIPGPPGRQGHKGDRGYPGQKGEKGEMGRQGIAGVQGPRGPEGPRGQKGEKGEI
QIGRRRRSLGV
NT seq
4536 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcttaacgaggctatcggacaattctagaggaagttcaggagagagagttata
agtgaaacaattacatcgaccagactcacatcattaccaccaaagggtttcagtggatca
agcagtaagagcatgagtagcagcacttggggaagcagctttgagaagaatattttaaat
caaaacagcagcacctcctacctcccttcttcctcactgagtgtgaatgcaggaggttca
gggttagactacgccctgttcctgggagatgactccattgggaagagcagaagtggagga
ggacgtgcagacagtgcaggatttgaaagtctatacgggagagactctgggttgaggagc
aggtccagttcctcagggggtgtgagaaagacacaagattcgtcttcctccattactcac
tctcccatgtttttggagagaaaaactacaatcagtcactcaggaggctatgatggaagt
tcaagcgccaattcatcaccagagctcacaaggaaggactatggcgcgaccagaggaagg
tcccaaaccagagagagtgaaatcagggttagattacagagtgcatctccatcaaccaaa
tggacagagttagatgatgtgaagaaactggtaaagagtggacgttcatcaagtgtcagt
cccacccgctccacagcctcctccaccctacctgtccctcgcaaagctaaagtcgaggcc
aaagtcgtcaaacaaggcactcagactgcttcggggcagtatgacaccactattctggaa
tcagcacttccatcgtatacatggaccagctccacactcccctctaatgcctccagcact
actgcttttgcttatcaaggcagcgccaataacatgtcaccgggatcttctcttttaaac
accacttcaccttcctcactgtcagtgtatggcttccagaataatcttgccactccttct
agtacactgctcacatcaaatacaatcaacacacattcaggatacggtgtacagaaaaac
atttctcaaaacaccggaagcgctggtcttgttagtacaggagtcactgcttctacaggc
acaactacacgctctgttaatgatgatatgccaaaaaaatatattattcttgagaaggag
aatattccttccaaaaaggacacagaagtgctcattttgtcaaaagacagcggaaagcag
ttctccagcagccaaacatacagaaaaggagggtcagtttcagatgtctcactgaagaag
gaaactttggcaagcagctacactgagacagttccagtcaaattaagttcaggctcttac
tatggatcttcatcaacccctaccaaagacaaggctacatatgcagagatctataaggga
aagaattatgaaaaagaaggcagcggttgctttggctgtggtccgagctgctgctcctgg
tggaagtggctgcttggactgctgcttagtctgctgctgcttcttggccttctttttgga
ctcattgctcttgctgaggaagtgaagaagctaaaagggcgtgtggatgaacttcagtcc
ctggttcaaggcaacagcgctcggactagtcgactgactggaaataacgtttacgctcaa
aggggagcatcatacatggaaggcgattctgagaacacactaaaccagggagctgctact
ttttcaaaccctgaggacctgaagagaacaatacagagcctcctgcaaaaagagatgcag
tctgagacattccgagccagtcttgcttcctcacttaaaggagaaagaggactaccaggg
cttaaaggtgacactggatctccaggacccaaaggggacaatggtttcccagggatacca
ggtccccctggaacagttggtcacccgggacctgaaggaccaaaaggacaaaaaggaagt
gcaggcgagcatggcgcagagggggcaccaggactcaggggccgagacgggtcaccaggg
ccgcggggagagacaggtcctgcaggctttggagaaaagggtgaaagaggctctccagga
gaaccaggaactcgtggccctcctggtccatctggtccaccgggtccaaaaggttctgca
ggagttaacgggctttcaggtgcaccaggtgaacctggtccacaaggtttcagaggagaa
gcaggccctgcaggacctaaaggggacagaggacttcctgggccacaaggaattaagggt
gaccatggtgagaagggagatcatggtgtaccaggttttccagggcctccaggaaaagca
ggactcaatggagagaaaggaaccaaaggatcaacaggggcttcaggtgcagatggtgaa
aaaggccaaagaggtgaccaaggtccaatcgggatgccaggaatcagaggcccagctgga
ccacccggggatattggccctcaaggatctccagggctccagggacccccaggcattgca
ggacttcctggacaacctggagttaaaggtgacaacggtgaacctggcagagttatcaat
gcagcaggctccagctctgtttcaattcctggaccaccaggtccacccggacctgctgga
cctgctggacctccaggactatctggccctgttggtcctgctggaattcctggccaacca
ggtgctaaaggtgaaaagggtgatcagggagaggaagggatcacagtggaaagatcatct
aaaaaagaatcctttagttctatggatactaatcaagttattcaagggccacctggacca
cctggtcccccagggcctcctggagctccaggatatggcacacctggccaaagaggagag
aaaggagagaggggagagccggggagctttgtgcccaactcaggaacattttttgccgga
ccaccaggaccacctggacccgcaggtcctaaaggagagacaggatcacaaggacctaga
ggataccaaggagatccaggtcagcctggtctacctggaagaccaggaggatcaggggaa
actagactcgctgcgtataatggagctcaaggtccccctgggccacctggacctccaggg
ccacaaggtcaacaaggggctaaaggggacagtggcattccgggtgctccagggatccca
gggacagctagaggttcaggttcagttgggtctccaggacagcctggacccccaggacct
cctggaccacctggcactcctggacactccggatctacaactgactatcgccgcttcatt
attgactacatgcagagtgacagcatgaggcagcatttatctggtttccaagggcctcct
ggtcctcctggggcctcagtatctgttgaagaggtggcatctcgagttattgcatacatt
cagcactctggattaagtggctcccctggtcctcaaggtcctcctggccctgctggctcc
gtatctgttagtgatatcattgctctattacaaagagacgatgtgaggcggtatgtaatt
ggccctccaggtccacctggcccttcaggaagtgtaaatatggccaactttgacacgcag
gaagtggcaaactatgttctgagaataatgaatgaccgagggttgataagtagaactgga
cctcctggaccgcctggtcctcctggtcatcctggctcacctggacagccaggcgctacc
tacagtgacattactgctttaattgagaggtcaggatttagtggaggtcttcaaggtcct
cctggacctccaggaagacagggaccacctggtccagttggtcccccaggagccccaggc
tcttcaagctcaggataccgacttgaagaagtccaagcttacatacaaaattctggttta
cggggtcctccagggccacccggccctccagggcctccgggactggcaggggactctaga
acacttgcatcccatgaccgagccagtcagagagcatacattcgtgctgagctgcaggat
tatctcagtagtgattcaatgcggcggtacatctctggtcttcctggaccccctggtcct
ccaggaccccgtggtgaaaaaggggaccgtggtgactctggacacagtgcgggtagtggc
tattattatgctactgaccgtaacggagtcaggttggctgaaacagattactccaatgtt
gctctgaaagtcactgactacatccggaatcagggtctactgcaggaaattaatgataat
tattggagatctcattccacggggatccaaggccctcctggtcctcctggtccacctggc
cattctggatacagccgtgtttttgctacttatggaaatgtcactgcagatctcatggat
ttcttcagactacacggtactatcccaggtccaccaggtagacaagggcataaaggagac
agaggataccctggacaaaagggtgaaaaaggggagatgggaagacaaggaatagctggt
gtacagggaccaagaggtccggaagggccgagaggacaaaagggagagaaaggtgaaatc
cagattggtcgccgaagaaggagtcttggcgtgtaa
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integrated database retrieval system
