Clarias gariepinus (North African catfish): 128529218
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Entry
128529218 CDS
T10780
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128529218 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128529218 (msh6)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128529218 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
128529218
NCBI-ProteinID:
XP_053358591
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Position
8:complement(27869776..27881588)
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AA seq
1373 aa
AA seq
DB search
MAKQSSIFNFFTKSPPAVAKTKSNPSPTEADLPSVTKSSSSPKEEAKHAAPSSRKSAEKS
TKILAKVGHGKIFGQRVTDANQSSSFSLNAGDLVWAKLEGHPWWPCMIVPHPMNGQQMRG
RGQDQRVHVHFFDEPSSRGWVRKKYIQDYKGSESTDAKPGGLFFSGKPEIRRAMALADRV
LQDSPEQRLKMPVCMDASDEEADSSEVMEVEKSTASDEEMSEEEVQKVKPSRRLSRAAAE
HAHKPKRRRIVVASDSEDSGEEFKPDQAETSSEDEDGVVSVEEESIAEESVSEPEPDSPV
KPVKRKRASEKSAKAKSTPIVSEINKRNPVSLAVNTKSRLSAFSAPESFESQSSAAGNFD
GTGVWDHEKLDWLQDGKRKDARRRRQSDEDYDPTTLYVPDDFLNKVTPGMRRWWQLKSEM
FDTVIFYKVGKFYELYHIDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFSDVLVQKGYKV
ARVEQTETPEMMEVRCKAMARPTKFDRVVRREVCRVITRGTQTYSVLDGAPSEADSKYLL
SVKEKNLEENAGQCHIYGVCFVDSSVGSFYVGQFQDDRHCSRLRTLLAHYVPAQVLFEKG
NLSAETRKIFKAALSSAMLESLSPGSQFWDAQKTLKTLADEDYFKEIKVKSSDSCSFLPS
ALKAMTSDSDSLGLTPKEGYELALSALGGCIFYLKKCLVDHELLSLAKFQQYVPVDVEKP
QSENASNFFAQTCQRMVLDGVTLANLEILQNSSTGGTEGTLLEQLDTCCTPFGKRLLKQW
LCGPLCNPASINDRLDALEDLMAAPAQASEVTELLKKLPDLERLLSKIHSMGTPLKGQDH
PDSRAVFYEEIVYSKRKIADFLSALEGFRTMQEIVTIMESVSVEFKSKLLRQVVILKTRS
NEGHFPDLRPELTRWDTAFDHEKARKTGVITPKAGFDPEYDQALSGIKECEGNLQDYLVR
QKKRLGCKNLSYWGTGRNRYQMEVPDSVSERSIPEEFEVRSTKKGWKRYSTKEIEQMFSE
LQSWEDKRDGALKDCMRRLFYNFDKNYREWQTAVECMSVLDVLLSLCRYSQSGNGMMVKP
EIVLPGDSPHFSPFLELRGSRHPCVTKTYFGDDFIPNDIFIGCHANDESDSADEKKILAP
CLLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGES
TFFVELSETASILLHGTTHSLVLLDELGRGTATYDGTAIASSVVKELSNRICCRTLFSTH
YHSLVEDFAQDCSVKLGHMACMVENECDEDPSQETITFLYKFISGACPKSYGFNAARLAS
IPEEVIQSGHCKAREFEKNTVALRIFKKVCLFAEDPTADREHFARLVQMIDNV
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcaaagttccatttttaatttttttacaaagtcgcctccagctgtcgcgaaa
acaaaatctaatccgtctcccaccgaagcagatttaccttcagttactaaatccagcagt
tccccgaaggaggaagctaaacatgcagctcccagtagtaggaaatctgcggaaaaatcc
accaagattctggctaaagtcggtcatggcaaaatctttggacaaagagttacggatgca
aatcaaagctcttcattttcgctaaatgcgggagatttggtatgggcaaaactagaagga
cacccatggtggccctgcatgatagtgccccatccgatgaatggccagcagatgaggggc
cgaggacaagatcaaagagtgcatgtccatttttttgatgaaccgtcatcaaggggttgg
gtcagaaagaagtacattcaggactacaaaggttcggaaagcactgatgcaaaaccaggt
ggtttgttcttcagtggcaagcctgaaattcgcagggcaatggcgttggcagaccgtgtg
ctgcaggacagtcctgaacagagactaaagatgcctgtctgtatggatgcctctgatgag
gaggcagattccagtgaagtgatggaggttgaaaaatcaacagcctcagatgaagaaatg
tcagaagaagaggttcagaaggtaaagcctagcaggcgtttgtcacgtgctgcagcagaa
catgctcacaaacccaaacgtcggcgtatcgtggtggcctctgacagtgaggactctggt
gaggagttcaagccagatcaggcagaaaccagcagtgaggatgaagatggtgttgtcagt
gttgaggaggagagtatagcggaagagagtgtatctgaacctgaaccagacagtcctgtg
aaacctgtaaaacgaaaacgtgcatcagagaaaagtgctaaagcaaagagtacacctata
gtttcagagatcaataagaggaatcctgtgagtcttgcagttaacacaaagtcacgtctg
tctgctttttctgctccagaaagctttgagagtcagagcagtgctgcaggaaactttgat
gggactggtgtgtgggaccatgaaaaattggattggttgcaagatggcaaaagaaaggat
gctcggaggaggcgtcagtcagatgaggactatgacccaaccactttatatgtgcctgat
gatttcctcaacaaggttacacctggtatgcgtcgatggtggcagctcaagtcagagatg
tttgatactgttattttctataaagtaggcaagttttatgagctctaccacattgatgct
gtgattggtgttaatgagttgggacttacttttatgaaaggcacctgggcacattctggt
ttccctgagataggatttggtcgtttctctgatgtgcttgtgcaaaaaggttacaaggtg
gcacgtgtagaacagacggagacccctgaaatgatggaagtacgatgcaaggctatggcc
cgccccactaaatttgaccgtgtagttcggcgagaggtttgcagagtaattactcggggt
acccagacatatagtgtacttgatggtgctccatctgaggctgacagcaagtatctgctt
agtgtgaaagaaaaaaatctggaagaaaacgcgggccagtgccacatatatggagtttgc
tttgttgacagctcagtgggttccttttatgtaggccagttccaggatgaccgtcactgt
tctcgtcttcgtaccttactagcacattatgtgccagcccaagtgctatttgaaaagggt
aacttgtcagctgagacacgaaagatctttaaagctgctttgtcctcagcaatgcttgaa
agtctcagtcctggctcacaattctgggatgctcaaaaaactctgaaaaccttggcagat
gaagattactttaaagaaattaaagtaaagagcagtgattcatgttcatttctccctagt
gctctaaaagcaatgacttctgatagcgactcgctaggccttactcctaaagaaggatat
gagctggccctttcagcacttgggggatgcatattctatcttaaaaagtgtctggttgat
catgagcttctttccctggctaagtttcagcaatatgttccagtggatgtggagaaacca
cagtcggagaatgcatcaaatttctttgctcaaacttgtcaacgcatggtgctggatgga
gtgacactggccaaccttgagattctccagaatagttctactggaggcacagaaggcact
ctgcttgaacagttggatacctgctgtactccttttggcaaaaggctgctaaagcagtgg
ctttgtggtcccctctgtaacccagcctccattaatgatcgtttggatgcacttgaagac
ctaatggctgctccagcacaagcttctgaggttacagaactcctgaaaaaacttccagat
cttgaacggttactcagtaaaatccatagtatgggtacccccctaaaaggacaggaccac
cctgacagcagagcagtcttttatgaggagatagtctatagcaaacgcaagattgctgac
ttcctttcagcactggaagggttcagaaccatgcaggaaatagtcacaatcatggagtca
gtctcagtggagttcaaatctaaattgctgcgacaagtagttatcttaaaaacaagaagc
aatgaaggccattttcccgatcttagaccagagcttacccgctgggacacagcttttgac
catgaaaaagcacgaaaaactggtgtgattacgcctaaggctggctttgacccagagtat
gatcaggctttgagtggcatcaaagaatgtgagggaaatctgcaagactacttggttcga
cagaaaaagagacttggctgcaagaatctgtcttactggggcacaggacgaaaccgctat
caaatggaggttccagacagtgtttctgagagaagcataccagaagaatttgaggtgagg
tccacaaagaagggctggaagagatactcaacaaaagagattgaacaaatgttctcagag
ttgcagagctgggaggacaaaagggatggtgcactgaaagattgtatgagacgactattt
tacaacttcgataaaaactacagagaatggcaaactgctgtggagtgcatgtcagttctt
gatgtgctgttgagtttgtgccgatatagccagagtggaaatgggatgatggtaaaacca
gagattgttctaccaggagatagcccccatttttcccctttccttgagctccgaggatcc
aggcatccctgtgtcaccaaaacctattttggtgatgacttcatccccaatgacatcttt
attggttgtcatgcaaatgatgaaagtgacagcgcagatgagaagaagatactagcacca
tgtttacttgtcacaggaccaaacatgggtggcaagtccactctgatgaggcagtgtggc
ctggttgtgatcttggcacagttgggttgctatgtgcctgccgaaagtctccgcctaacc
cctgtagatcgagtgttcactcgtcttggtgcctcagatcgtattatgtccggagagagt
actttcttcgtagagcttagtgaaacagccagtatcctcctgcatgggaccacacattca
cttgttcttcttgatgaactgggcaggggaacagccacatatgatggcacagcaatagca
agctcagtggtaaaggaactgtcaaataggatctgctgccgaacgctgttctccactcac
taccattccctggtagaagactttgctcaggactgttctgttaaacttggtcatatggcc
tgcatggtggagaatgagtgtgatgaggaccctagccaggagacgatcactttcctgtac
aagttcatcagtggtgcttgtccaaaaagctatgggtttaatgctgcccgccttgccagt
atccctgaagaggtgatccaatctgggcattgcaaagcccgtgagtttgagaagaatacc
gtagctctgagaatcttcaaaaaagtgtgtttgtttgctgaagaccctacagctgaccgt
gaacactttgccagactggttcagatgattgacaatgtgtaa
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