Clarias gariepinus (North African catfish): 128529321
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Entry
128529321 CDS
T10780
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
128529321 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128529321 (ercc6)
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128529321 (ercc6)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128529321 (ercc6)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
128529321 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Tlde1_dom
Motif
Other DBs
NCBI-GeneID:
128529321
NCBI-ProteinID:
XP_053358721
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All DBs
Position
8:17826491..17845642
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AA seq
1400 aa
AA seq
DB search
MPIDNNEDQDCPALSSLASEETDNVSSWASSAVCIPEIQGAPAPAVCPGNAAPENSKKAQ
LLLHINRQEIQAVSQNDQAAELQGLGVDVYDQDVLEQGVLQQVDRAFQEANQATARADAA
KEYESVLDDVRSCTSALKHINKILEQLTPHAASSKDISRKIDSVKRQKENKEKQLKKIRA
KQRRLQAILSGEDIQKLEAELLTEDETEAGPSTQGSMLMPSQETEWEELIRTGQMTPFGT
RIPQKQEKKEPRKLMLSENSGFDKYLADQAMMADRRKKPTPKKKGKISRSSSTDMTKNKV
SSKREKKLEKRMRKLQRTALKAHPKARPKTEKEFSQTKRKGTDSEGSEYVPSDELMNPDE
PERDDEFWHDEKEEYELKPYKKKESKTKKSKKVDESDEYLPSSSEDEDAERKAKVKRYKD
DGDIEFYRKRIRNWKRQRLQEKERKRQAGEDESEESDAEFDEGFKVPGFLWKKLFKYQQT
GVRWMWELHCQQAGGILGDEMGLGKTIQVIAFLAGLSYSKLKTRGSNYRYAGLGPTVIVC
PATVMHQWVKEFHIWWPPFRVAVLHETGSFNHKKEKLIPEIAASHGILITSYSYVRIMQD
YIQKYDWHYIILDEGHKIRNPNAGVTVACKQFRTPHRFILSGSPMQNNLKELWSLFDFVF
PGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKADVKAN
LSLPDKNEQVLFCRLTEEQREVYQNFLDSKEVYQILNGDMQIFSGLIALRKICNHPDLFT
GGPRMLRGVPAEELSVEEHFGYWKRSGKLIVVESLLRLWFKQGHRVLLFTQSRQMLEILE
VFVRENGYTFLKMDGTTTIASRQPLITQYNENKEIFIFLLTTRVGGLGVNLTGANRVIIY
DPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQ
RRFFKSNDIYELFTFSNPDGSQGTETSAIFAGTGSDVQVPKKNKVPHSSPTNPKLMSSKQ
ENSQSSLLCKENASPGSFNKNAPILNGFSNTNSSKESDSLIMTSTPTSAHGSLTNGHQQD
LFIANTPQKHREKKKHCDETDAVSKTSDKHKHKHKKRKNREDARFEGHRISHLVKKRRYK
REDSEDQKETKDEQMNDDYVLAKLFKKSGIHSVMKHDTIMEASNPDFVLVEAEANRVAKD
ALKALKLSRQQCRLPLRGSTPTTQVPVRKRFGQKKNSRLNQSSETTQKTGEKCKDAELIK
KAGIKKLGSAAHFSGEGVEEEALSTSLSSSSLLARMRARNHISLPQSQEEDEDDNEQRAQ
SSTPLASPTEHDELLVDLRNFVAFQAQVDGQASTKEILEYFTPRLTSTQTPVFRELLRNI
CDFHRLPGQEGLWKLKTDYR
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgcctatagacaataatgaagaccaagattgtcctgcattgtccagtctggcaagtgag
gaaactgacaatgtgtccagctgggcatcgagtgccgtctgcattccagagatccaggga
gcaccagctcctgcagtctgccctggtaatgctgcgcctgaaaactccaaaaaagcacag
ctcctgctccatatcaaccgtcaggagatccaggcggtgtctcagaatgatcaagcagcc
gagctccagggtttgggagtggacgtgtatgatcaggatgttttggagcaaggagtcttg
cagcaggtggaccgagcctttcaggaggctaaccaggccacagcgagggcagatgcggcg
aaagaatatgaatctgtcctggatgatgtcaggtcatgcacaagcgctttaaaacacatc
aacaagatattagagcagcttactcctcatgctgcctccagcaaggacatcagccggaaa
atcgactctgtcaaaaggcaaaaggagaacaaggagaagcagttaaaaaagatccgagcc
aagcagaggcggttacaggccattctgagtggagaggatattcagaagctcgaggcagag
ttattgactgaggatgagacagaggcaggcccatccactcagggcagcatgcttatgcct
tctcaggagacagagtgggaagagctcatccgcacgggtcaaatgacacctttcggcaca
cgcattcctcagaagcaagagaagaaggaaccacgcaagttgatgctcagtgaaaactca
ggctttgataagtatctcgcggaccaggccatgatggcagacagaagaaagaaaccaacc
ccaaagaagaaagggaagatttccaggagttcctccaccgacatgacaaaaaacaaggtg
tcctccaagcgagaaaagaagctagagaaacgaatgcggaaactccaaaggactgcccta
aaggctcaccccaaagcaaggcccaaaacggagaaagaattttcccagaccaaacggaag
ggcacagacagcgagggctctgagtatgtccccagcgatgagcttatgaatcctgacgaa
ccagagcgcgatgatgagttctggcatgatgaaaaggaagagtatgaacttaagccttat
aagaagaaggagtctaaaaccaagaaatcaaaaaaggtggatgagagcgacgaatatctt
ccgagcagttctgaagatgaggacgctgagagaaaagccaaggtgaagaggtacaaagac
gatggcgatattgaattctacaggaaaagaattaggaattggaagaggcagagacttcaa
gagaaagagcggaagaggcaagcaggagaggacgagtctgaagagagcgatgctgagttt
gacgaaggttttaaggtgccgggatttctctggaagaaactcttcaagtatcagcagaca
ggtgtcaggtggatgtgggaactgcactgccagcaggcaggaggcattctgggagatgag
atgggccttggcaagaccatccaagtaatagctttcctggcaggcctgagctacagcaag
ttgaagacacgcggctccaattacaggtatgctggattggggcccacagtcatcgtatgc
ccagccacagttatgcatcagtgggtgaaggagttccatatctggtggcctccattccgt
gtagcagttctccatgaaacaggttctttcaatcataagaaggagaagctcatccctgag
atagccgccagccacgggatcctcattacgtcttactcatatgtacgcattatgcaggat
tacattcagaaatatgactggcattacataatcctggatgagggccacaaaatcaggaac
ccaaatgcaggtgtcactgttgcatgcaagcagttccggacgcctcatcggttcatcctc
tctggttcacccatgcagaataacctgaaggaactttggtccctttttgactttgtcttc
ccagggaaactgggaacgcttcctgtcttcatggagcagttctcagtgcccatcactatg
ggaggatatgctaatgcctctccggtgcaggtgcagacagcctacaagtgtgcctgtgtc
ttacgtgacaccatcaatccgtacctgctaaggaggatgaaggcagatgtaaaggccaat
ctctcactgccagacaaaaatgagcaggtactgttctgtagattaactgaagaacagcgg
gaagtctatcagaactttttggattccaaggaagtttatcagattctgaatggagatatg
cagattttctctggcttgatagccttgaggaagatctgtaaccacccagacctgttcact
ggtgggccccgcatgctgagaggtgtacctgcagaggaactgagtgtggaggagcacttt
ggctactggaagcgctcgggcaagctaatagtggtggagtctctgctcaggttgtggttt
aaacagggacacagagtcttgctcttcactcagtccagacagatgctggagatcctagag
gtgtttgtcagggaaaacggatacaccttcctcaaaatggacggcaccactaccatcgcg
tctcggcagccactcataacacagtacaatgagaacaaggaaatatttattttccttctg
acgaccagagttggaggattaggcgtcaacctaacgggtgcaaacagagtaattatctat
gatccggattggaaccctagcacagacactcaggccagagaacgtgcttggagaataggg
cagaaacagcaggtaactgtttataggctgctcaccgccgggaccattgaagagaagatt
taccacaggcaaattttcaagcagtttcttactaatcgagtgctcaaggatccaaagcag
cggcgttttttcaagtccaatgacatttatgagctcttcacattcagcaaccctgatggc
tcccagggaaccgagaccagtgcgatatttgcaggcactggctcagatgtacaggttcca
aaaaaaaacaaggtgcctcatagttcaccaacaaatccaaaactcatgtcctcaaagcag
gagaattcccaatcatctttgctgtgtaaagaaaatgcttcaccagggtcctttaacaaa
aatgctccaattctcaatggcttttccaacacgaactccagcaaggaaagtgactcttta
atcatgacatccacaccaacctccgctcatggttcattaacaaatggtcatcagcaggat
ctctttattgccaacactcctcagaaacacagggaaaagaaaaaacactgcgatgagact
gatgcagtgagcaaaacctcagataaacataaacacaaacataaaaaacgtaagaacaga
gaagatgcacggtttgagggtcatcgaatctctcacctggtgaagaagagaagatacaaa
agggaagacagtgaggatcagaaggagaccaaagacgagcaaatgaacgacgactatgtt
cttgccaaactcttcaaaaaatctgggatccacagtgttatgaaacatgacacaataatg
gaggcatcgaatccagactttgtcctggtggaagctgaggccaaccgggtagctaaagat
gcccttaaggctctgaagttatccagacagcagtgcaggctgcccctcaggggatccaca
ccaacaacacaagtgcctgtcagaaaaaggtttggacagaagaagaactctcgtctcaac
cagtcctctgagacaacacaaaaaacaggagaaaaatgcaaggatgcagagttaataaag
aaggcaggaatcaagaaactagggtctgctgcccacttcagtggagagggagtggaggaa
gaggcgctttctacctctctttcctcctcctcacttttagccagaatgagggccaggaat
cacattagcttacctcagagccaagaagaagatgaagatgataatgaacaaagagcacag
tcttccacaccacttgcttcccctaccgagcatgatgagctgctggtggatttgagaaac
tttgtggccttccaggctcaggttgatggccaagccagcactaaggagatcctggagtat
ttcactccaagattaacgtccacacagacacctgtgttccgagagttgcttagaaacatt
tgtgacttccacaggctgcccggacaagagggattgtggaaacttaaaactgattacaga
taa
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