Clarias gariepinus (North African catfish): 128529759
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Entry
128529759 CDS
T10780
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Membrane trafficking [BR:
cgar04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
128529759 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128529759
NCBI-ProteinID:
XP_053359233
LinkDB
All DBs
Position
9:30200033..30250237
Genome browser
AA seq
3235 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLNLGIWGGDAILRNLEIKENALSQLDIPFKVKAG
HIGRLELKIPWKNLYTQSVEASLDEVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKVAEQENPKTEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDSVTNPNSPLSFGVSLQ
NLSLQTADANWKPCLLDEKAKLFFKLVRLDNLFAYWNVNSELYSVHPPLKALQRLQQNLA
VQDTIPHDYQFIFRPISANAKLRMNPRSDVDFSSPKVDLVVNLPEVAVELSRTQYVSILE
LLGSVDMMSRNLPYRKYRPDVPVHTNASQWWLYVIKGILEVNIKPSLHMWSWKHIKRHRQ
QVKQCKELYMTKITNKKPAETLLKKLEETEKCLDIFNITLARQQAEMEASKAGLRIYRPG
LKMEEEESQGWFGWMWNWSGDSSAPTKEVKPGAFDTLMTPAEKAKLYTAIGYSETAVNPN
LPKNFEDMNIRFQLVSMSVSIKESKDKPEIIKLSVIDLRAMLAQRSSAQAIKISAQLSSF
EVTGVLRNSVAPTLLSPRRAVEDDKPLLSLMFETNPLDGKADQRLHVESQPLEIIYDAMT
VNNLSAFFMPPNDLQLDELTNATRMKLEQFRDRTSTGLMYIIETQKVLDLNINLMASYVF
VPQMGFYDPKHNLIILDLGHFQMSSQSKENLPQLSAGKTSIEDIMSRAYDRFDVQLTSLQ
LLYSKPGEDWQSARKLRQSSLHILEPVDLKVVFSRAMVVTDSRMPKFEIFGELRLLSLRI
SDDKVRGILELIDSIPLPESRPAPRSSAAQSTPKVFKSRDTPQLTPRKPAMVDLRSSIIF
DSGSEEDLFFDAPSSPIEDMPFFEASSGSLEKLTSVKRKTMVKHDPKKNMTEFLLKFEIN
LLSIQLCRLSAGLEVPVLRLEIEGLGTELKVRTFDMSSSTFLREICLECSEYMDGEDKKV
HLITTLDNTEDDLLSLEYIKADKNAPDFKSAYNNTEQLIKVNFSSLDVHLHTEALLNSMN
FLNSLLPPAKKEESVEQPSSQRDDEGEGDSEEEKKEESTISKKSTTKKSKFEDVVNLHIR
ADLSCLKVFIRGQKARISEISIEGLESEVKMKKKSVEILANLKNIVILDCDKDALYKEAV
SVADKDVFGFHMVNYVDATDGDAYTDMKIVDTSVTLTVGCIQVIFLNKFVSSVLAFINNF
QEAKDALAEVTVQAAEKAATGVLELAEKSTRISLDVNIKAPVVFLPQSSVSTNVIVADLG
LVTVKNHFEIVPSKKHTAIPPVLDVMSVALSELKMYRTTFKDGQFQSEIQLLMPVNMDLS
ITRNLSASWYHSIPDNQINAHLKPMSLILSQEDLTVVLKTLNENLSETSDAVPPPKTPDK
AETGSTKDSQESGAGTTVVTSAVVEGQKSAKLKSTLKLHFKFDSMTLVLYSSSGAETALL
DSHDEQLKLAEFTLGTISTAVHMFSDSSMKASVKLAECLLDDKRKRVKMITSRMMAMRKG
AEKNVMVEVNYRQGRDGTTLDTVVQDLYLCASMEFLLTVADVFLKAMDQGFSSQHKSSRP
ASTSTKDSAAPTQPLVAKSEMNVMVKNPEIVFVADLSRADAPALVMTTQCELVMKSDIAG
QLMTAAITDLKVVACPFVCGEDESNITTVLQPCQVFFKQTQSSTQPQKIELAINSLTLKV
SPIIINTVITIQSALTPAAETPEELESPVPPDLWERRDWRDLKLWFLEEEGEEDAKAVQP
LKPLGESLQLRISSICLTLEAGVGHRTVPMMLAKSSFHGDVTDWSTLINLQCRLNMEVNY
YNENMGVWEPLLEPLEDETKDGFRPWTLELKMKKKPVKRSSIADEVDYKVPDYKTVISIN
SNDQLNITLTKCGLNMLSNLGTAFAEAAKQTAECFQKDQAPIVVKNRLGLAVAVLYSEVF
KPIGKTSKGRVVELQDGESLNMDYTLTAVDADQFSAMTSLSSKNFIQPTPVGHTSASIIP
LIKVGRNMYSVTHLKSGVTRFFVCQIYSNEGSKFVKIRSPFMIMNHFSLPFRVFEGSTCL
GICSPTEEFCVPLGSYRSDLTLQPVIEGDEQYENSESFNYETLKQKPDERVERTCHHPGD
ATLIFKVNMVPVQDTVMSHSTEEEIDQPYVLHLWPPILLRNLLPYPITYGVMVNGNSAPT
MLKEGHSSQLHTAVTDNPSLELKLLGYLQQDWEAECHLRSDHDEISFITFHSCSPSEEEV
DGFAVKVELDIAVHVKKEVGQVVVAIHSPYWMVNKTGRLLQYKADDIHRKHPKDYDMPLL
FSFKPRNFLQNNKVRLMISDSELSDDFSIDTVGSYGDVKCKGRAKDYLVGVKIDASSFSL
TRLVTFLPFYMLVNRTKHVIQVCEEGQDEWTCAKPGETATPFWPERDSKKLKVKVDGSQS
TAQTIGFHQPENCLLLHLDNTLGGIIVDVNLTEHSAVIRFSEYHDGAAPFLLINHTKEST
LEFHQSCKERRPSTWVPEGTLPLGENRKSICSQKLEMDELGPGQAVYYTWAEPTGSRVLR
WSMGLYSGELKNEEDLLLDNEGKLFVISFYEGLQRVVLFTSERRVFKQLCESERVELAEQ
EISLSLQDMGISLVNNSTSQEVAYIGITSSDVVWETKPKKKRRWKVMSGKDAELLEQHYK
EYTESNPVDNSILDLDNGYQVSLTPNGAEMRIMQPYDAPLRRNFLPALKVEYSVSARQQA
YRVQINRIQIQNQLSGAIFPFVFYPIKPPKSVRMDSEAKPFIDLSLITRAAGHSDIQRIK
YFKVLIQEMDLRLDLGFLYAILDLFTAENAAAITSDQEVELFEKDIEYLKTGLNHVSATD
TSPISLYEYFHISPIKLHLSFSLSSGGEDGNKEKRETELIPVQSLNLLLKSIGATLTDVQ
DVVFKLAFFELTFQFRTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEG
VEAFFYEPYQGAIQGPEEFMEGVALGMKALVGGAVGGLAGAASRITGAMAKGVAAMTMDE
EYQQKRREAMNKQPSGLKEGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVG
KGLVGAVTRPTGGIIDMASSTFQGIKRAAETSQDVVSLRPPRFIHEDGVIRPYKEREGIG
SQMLQKIENGRFARYRYFAHAKVNESDFLMITKRGIFFVTTGTFGQLTCEWQYLFDEFTK
DPMIVEERRLRIEAKERVKSVFHAKEFGKIINFKTPEIAKWVLTKLQDARESLQK
NT seq
9708 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcgctggtggtggacgtcctgaacaggtttctcggggactacgtggtg
aacctcgacagctcccaactcaatctggggatatggggaggtgatgcgattctgaggaat
ctggaaataaaagaaaatgctttgagccagctggacattccttttaaggtcaaggcgggg
catataggtcgcctggaactgaagatcccatggaagaatctgtacacgcagtcggtggag
gcctcactcgatgaggtctacctgctcatcgtccccaccgccagtataaagtatgatgct
gagaaggaggagaagcagctgcaggaggctcggcagagagagcttcagaggatcgaggaa
accaaactgaaagtggcagagcaagaaaatccaaagacagaaaagcaggacacctttgtg
gagaaactggtcacgcaggtgatcaaaaacctgcaagtgaaaatttctaatattcacatt
cgctatgaagacagtgtcaccaatccgaattcacctctttcattcggagtgtctcttcaa
aacctcagtctccagacagcagacgcaaactggaagccttgcttgctggatgagaaggcc
aagctgttttttaagcttgtccgtctggataatctctttgcgtactggaacgtgaactca
gagctgtactccgttcaccctccccttaaagccctgcaacgtctgcagcaaaacttggct
gttcaggacaccatccctcatgattatcaattcattttccgtccgatttctgccaatgcc
aagctccgtatgaaccctcgctcggacgtggacttctcctcgccgaaggtagatctggtg
gtcaacctgcccgaagtggctgtggagctcagcagaacacagtatgtcagcattctggag
ctcttgggctctgtggatatgatgtcgcgcaatcttccgtacaggaagtatcgtccggac
gtgcctgtccacaccaacgcaagccagtggtggctttatgtcatcaagggaatcttggag
gtgaacataaaaccctcgctgcacatgtggtcttggaaacacattaaacggcaccggcag
caagtaaagcagtgcaaagaactttatatgaccaagatcaccaacaagaagcctgcagag
accctgctcaaaaagctggaggagacggaaaaatgcctggacatttttaatatcacgctc
gcaagacaacaagccgagatggaggcctccaaagctggcctgcggatctaccggcccggg
ttgaagatggaggaggaggagtcgcagggctggttcggctggatgtggaactggtccggg
gacagcagcgctccaacaaaagaggtcaaacctggagcttttgacacactgatgacccca
gcggagaaagccaaactttacactgccatcggatacagtgagacagcggtcaatcctaac
ctgccaaagaattttgaggacatgaacatccgtttccagttggtgagcatgtctgtgtcg
atcaaagagagcaaagacaagcctgagattatcaaactatccgtcatcgacctgagagcc
atgctggcgcagagatcatctgctcaggcgataaagatctcagctcagctgtcatcattc
gaggtgacaggtgtgttgaggaacagcgtcgctcccacgctgctttctcctcgtcgtgcg
gtggaggatgacaagcctctgctcagcctcatgtttgagaccaacccactggatggcaag
gcagatcagagattgcacgtggaatcgcagccgctggagatcatttacgatgcgatgacg
gtgaataacctttcagcgttcttcatgcctccaaatgacctgcagctggacgaactgacg
aacgctacacgcatgaagctggagcagttccgcgacagaacctcaactggacttatgtac
atcatcgagacacagaaagttcttgacctgaacatcaacctgatggcgtcctacgtcttc
gtgccccaaatgggcttctatgatcctaagcacaacctcatcattctggatctgggacac
tttcagatgtccagtcagagcaaagagaatttgccgcaactctccgcgggaaagacctcc
atcgaggacatcatgtctcgagcctacgaccgcttcgatgttcaactcaccagcctgcag
ctgctatactctaagccaggtgaagactggcagagtgctcggaagctccgacagtcttcc
cttcacattctggagcccgtcgacttgaaggtggtttttagcagagcgatggtggtcaca
gactcaaggatgccaaagtttgagatattcggcgaacttcgtctgctctcgctccgcatc
tctgatgacaaagtccgtggcatcttggagctgatcgacagcattcctcttcccgagagt
cggcctgcgccgcggagttctgccgcgcaaagtactcccaaggttttcaaatcaagagac
acccctcagctgaccccaagaaaaccagctatggttgacctgcgctcttcaataatattt
gactcaggatcggaggaggacttgttctttgacgcaccaagttcgccgattgaggacatg
ccattttttgaggccagttcgggctccttagagaaactaacctcggtaaagaggaaaaca
atggtgaaacatgaccccaagaagaacatgacagagtttctgctaaagttcgagataaac
ctgttgtcgatccagctgtgccgcctttcagctggcttggaggttcccgtcctccgtctg
gaaatcgaaggtctggggacagagctgaaagtgcgcacattcgatatgtcttcctccaca
ttccttcgggaaatctgtctggagtgctcagagtacatggatggagaagacaagaaggtt
cacctcatcaccactctggataacaccgaggatgatctgctctcactggagtacattaag
gcggacaagaacgctcccgatttcaaatcggcttataacaacacagagcagcttatcaag
gtaaacttctcatccttggatgtgcacctccacacggaagccctcctgaactccatgaac
ttcctgaacagtctcctaccgcccgcaaagaaggaggagtctgtcgagcagccttcgtcc
caacgcgatgacgagggggagggagacagcgaggaggagaagaaagaggagtcgaccatt
tccaagaaatccactactaagaagtcaaagtttgaggacgtggtaaatttgcacattaga
gcagatctgtcctgtctgaaggtcttcatcagaggacagaaagccagaatctccgagatt
agtatagaaggcctggagtctgaagtaaagatgaaaaagaaatcagttgagatcctagct
aacctgaagaacattgtcatattagactgtgacaaagacgctctgtacaaagaggcagtg
tctgtggcagataaggacgtgttcggtttccacatggtgaactatgtggacgctacagac
ggagacgcctacacagacatgaagatagtggacaccagcgtcactctgaccgtaggctgc
atccaggtcatctttcttaacaagttcgtctcctcagtactggccttcatcaataacttc
caggaagctaaagacgctttagcggaggtcacggtgcaggcagcggaaaaagcagccacg
ggcgtgttggaactcgcggagaaaagcactcgcatttcgctggacgtgaacatcaaagca
cctgtcgttttcctcccgcagtcgtccgtttctaccaacgtcattgtggctgatctgggt
ttggtcacggtcaagaaccattttgaaatcgtgccgtctaaaaaacacaccgcgatccct
cccgtactggacgtcatgagtgtggctctgagtgagctgaagatgtacagaaccacgttt
aaagacggccaattccagagtgagattcagttactgatgcctgtgaacatggacctgtca
atcacacgcaatctctccgcctcctggtatcacagcatccccgacaaccagatcaacgca
cacctcaagcccatgagtctgatcctgagtcaggaggacctaactgtggtgctgaagact
ctgaatgagaacctgtccgaaacttccgatgcagttcctcctcctaaaacgcccgataag
gccgagaccgggtctaccaaagactcccaggaatctggagcagggaccacggtggtgact
tctgcagtggtggagggacaaaagagcgccaaactgaaaagcacgctaaaactccacttc
aagttcgattcaatgactctggttctctacagctcaagtggtgctgagaccgcattactg
gactctcacgatgaacagctgaagctggcggagttcaccctgggcaccatctccaccgcg
gtgcacatgttctcagacagctccatgaaagcctctgtcaaactcgccgaatgtctgtta
gatgataaaaggaagagggtcaaaatgatcacttccaggatgatggcgatgcgaaagggc
gctgagaagaacgtcatggtggaggtgaactatcggcagggtcgggacggcaccacgctc
gataccgttgttcaggatctgtacctctgcgccagcatggagttcctgctcacggtggct
gatgtcttcctgaaagctatggatcagggcttctcgagccaacacaagagcagcaggccg
gcctctacttccaccaaagattcagcagctcctactcagcccttggtggcaaagtcggag
atgaatgtgatggtgaagaaccccgagatcgtgttcgtggccgacctgagccgtgccgat
gccccggccctcgtaatgaccacgcagtgcgagctggtaatgaagagtgacattgcaggc
cagctcatgacagccgccatcaccgatctgaaggtggtagcgtgcccgtttgtgtgtggc
gaagatgagagcaacatcactacggtgctgcagccgtgccaggtgttcttcaaacaaacc
cagtcgtctactcagcctcaaaaaatagagctcgcaataaactccctcacgctgaaggtg
tcaccaatcattataaacacagtcatcactatccagtcagcgctgacccctgcagctgag
acccctgaggagctggagagcccagtgcccccggacctgtgggagcgcagggactggcgc
gacctcaaactctggtttctggaggaggagggggaggaagacgccaaggccgtgcaaccg
ctcaaacctctgggcgagtcactccagcttaggatttcctccatttgcctgactttagag
gctggtgtgggtcatcgcactgtccccatgatgcttgccaaatcctcttttcatggagat
gtgacggactggagcacactgattaacctgcagtgtcgccttaacatggaggtcaattac
tataacgagaatatgggagtgtgggagccacttttggagccgcttgaagacgaaactaag
gacggtttcagaccatggacgctggaattaaagatgaagaaaaagcctgtgaagcgatcc
agtattgccgatgaggtggactacaaggtgccggattacaaaacagtaatcagcatcaac
agcaacgaccagctgaacatcactctcaccaaatgtggactgaacatgctgagtaattta
ggaacggcgtttgcggaagccgccaagcagacggcagagtgtttccaaaaggaccaggct
ccgatcgtggtgaagaatcggttagggttagcagtggctgtcctgtacagcgaggtgttc
aaaccgatagggaagacctcgaaaggccgcgtggtggagctgcaggatggggagagctta
aacatggactacactctcactgctgtggatgctgatcagttctcagcgatgaccagctta
agcagcaagaacttcatccagcctacccccgtcggccacacctcggccagcatcatccca
ctgatcaaagtgggccgcaacatgtacagcgtcacgcacctgaagtctggggtcacgcgc
ttcttcgtctgtcagatttactccaacgagggcagcaagtttgtcaagatccggtcacct
tttatgatcatgaatcacttttcgctgccattccgggtgtttgagggctccacgtgtctg
ggcatctgttcacctactgaggagttctgtgtccctcttggctcctacagatcggatctt
accctgcagcccgtaatcgagggagacgagcagtacgagaactctgagagcttcaactac
gaaaccctcaagcagaaacccgatgaacgtgtggagaggacgtgtcatcaccctggcgac
gctactctcattttcaaggtcaacatggttcctgttcaggacactgtgatgtcccacagc
accgaggaggagattgaccaaccatatgtcctccatttgtggcctcccatacttctccgg
aaccttctaccctaccccatcacttacggcgtaatggtgaacggaaactctgcccccacg
atgctgaaggagggccactcgtctcagcttcacacggccgtcacggacaaccccagtctc
gagctgaaactcctcggctacctgcagcaggactgggaggccgagtgccacctgcgctcc
gatcacgacgagatcagtttcatcacgtttcactcgtgcagcccgtcggaggaggaagtc
gacgggtttgccgtgaaggtggagctcgatatcgctgtccacgtcaagaaggaggtgggc
caagtagtggtagccatccattccccttattggatggtgaacaagacgggcaggctgctg
cagtataaagccgacgacatccatcgcaaacatcccaaagattatgacatgcctctgctg
ttctcttttaaacctcgtaacttcctgcaaaataacaaggtccgcttgatgatttcagac
agcgagctctcggacgacttctcgatagacacagtcgggagttacggtgacgtcaaatgt
aaaggaagagccaaagattacctggtgggggtgaagattgatgcgagcagtttcagtctg
acgcgcctggtaacgttcctgcccttctacatgctggtaaacagaacaaagcacgtaatc
caagtgtgcgaagagggacaggatgaatggacttgtgcgaaacctggagagaccgccact
cctttctggccagagagagattccaagaagctcaaagtgaaagtggacgggtcccagtcg
accgctcaaaccatcggcttccatcaacccgagaactgcctcctactgcaccttgacaac
accctgggtggcatcatcgtcgacgtgaacctgaccgagcattcggctgtaatccggttc
tccgagtaccatgacggtgcagctcctttccttctcatcaaccacaccaaggaaagcacg
ctggagttccaccagagctgcaaggagcgtagaccctccacttgggttccagaaggaacc
ttacctttgggggagaacagaaagtccatctgctctcagaagctggaaatggatgagctg
ggtccaggccaggccgtctactacacatgggccgagcccacgggttcccgggttctccga
tggagcatgggactttacagtggtgagctgaagaatgaggaggacctgctgctagacaat
gaggggaagctgttcgtcatctcgttttacgagggcctccagcgcgtggtgctgttcacc
tcagagcggcgtgtcttcaagcagttatgtgagagcgaaagggtggagctagccgaacag
gaaataagcctctcgctgcaggatatgggcatctcactggtcaacaacagcaccagccag
gaagtggcatacatcgggattaccagctctgacgtcgtgtgggagaccaagccgaagaag
aagaggcgctggaaggttatgagcgggaaagacgccgagctgttagagcagcactacaaa
gagtatacagagagcaaccctgtggataacagcatcctagacctagacaacggataccag
gtgagtttgactcctaacggtgcggagatgaggataatgcagccttacgacgcgcctcta
cgacggaactttcttccagccctgaaggtcgagtacagcgtctcggccagacagcaagcg
taccgtgtgcaaattaacaggattcagatccaaaatcagctctctggggccattttccca
tttgtgttctaccctattaaacctcccaaatcagtcagaatggactcagaggcaaaacca
ttcattgacctcagtctcatcacgagagcagcaggacactcggacatccagcgtatcaag
tattttaaggtgttgattcaggaaatggatctgcgtttggacctgggcttcttgtacgcc
attttggacctgttcactgccgagaacgctgccgccatcacctccgaccaggaggtggag
ctgtttgagaaggacatcgagtatttaaagacgggattgaaccacgtgtccgccaccgac
acgtcccctatcagcctttacgagtacttccacatctctcccattaagcttcatctgagc
ttctctctgagttctggcggggaggacgggaacaaggaaaagagagagactgagctgatt
cctgtgcaatcccttaacctgctgctgaagagtataggagcgacactaaccgacgtccag
gacgtcgtcttcaagctggcgttctttgagctgactttccagtttcgcaccacgcagcag
ctccagtgggaggtcatccgccattactccaaacaggctatcaagcaaatgtacgtacta
gtgctgggtttagacgtccttggcaacccatttggtctgatccgaggtttgtcagaggga
gtcgaggccttcttttatgagccatatcagggagcaattcaaggtccggaggagttcatg
gagggtgtggctttgggtatgaaggctcttgttggaggtgcagtagggggtttagccgga
gcagcatctcgtatcaccggtgcgatggctaaaggtgtggctgcaatgacgatggatgag
gagtatcagcagaaaaggagagaagccatgaacaagcagccgagcggtttaaaagagggt
ctgaccagaggagggaaagggcttgtctctggctttgtgagtggcattacaggcatcgtt
actaaacctatcaaaggtgctcagaaggagggagcagcaggtttctttaagggtgttggc
aaaggtctggtaggagccgtgactcgtccaacagggggcatcattgacatggcgagtagc
actttccagggcatcaagagagcggcagaaacgtctcaggatgtagtgagcttgcgaccg
ccgcgtttcatacacgaggacggcgtcatcagaccgtataaagagagggagggcatcggc
agccagatgttacagaaaattgaaaatggacggtttgcgaggtacaggtactttgctcat
gccaaggtgaacgagtcagatttcctgatgatcactaaaaggggtattttttttgttaca
acgggcacttttggccagttgacgtgcgagtggcagtatctatttgatgagtttaccaaa
gatcccatgattgtagaagagagaagactgcgcattgaggcaaaggaaagggtgaagtct
gtgtttcatgccaaagagtttgggaagatcatcaacttcaagactccagaaatagccaag
tgggttctgaccaagcttcaggatgccagggaaagccttcagaaataa
DBGET
integrated database retrieval system
