Clarias gariepinus (North African catfish): 128530011
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Entry
128530011 CDS
T10780
Symbol
itgb4
Name
(RefSeq) integrin beta-4 isoform X1
KO
K06525
integrin beta 4
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04382
Cornified envelope formation
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
cgar04518
Integrin signaling
cgar04810
Regulation of actin cytoskeleton
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128530011 (itgb4)
04518 Integrin signaling
128530011 (itgb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128530011 (itgb4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128530011 (itgb4)
04810 Regulation of actin cytoskeleton
128530011 (itgb4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128530011 (itgb4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgar04147
]
128530011 (itgb4)
04515 Cell adhesion molecules [BR:
cgar04515
]
128530011 (itgb4)
04090 CD molecules [BR:
cgar04090
]
128530011 (itgb4)
Exosome [BR:
cgar04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
128530011 (itgb4)
Exosomal proteins of bladder cancer cells
128530011 (itgb4)
Cell adhesion molecules [BR:
cgar04515
]
Integrins
Integrin beta subunits
128530011 (itgb4)
CD molecules [BR:
cgar04090
]
Proteins
128530011 (itgb4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
fn3
Calx-beta
Pur_ac_phosph_N
Integrin_B_tail
FN3_DSCAM-DSCAML_C
I-EGF_1
EGF_2
EGF_Teneurin
Fn3_VIN3
EGF_integrin
Interfer-bind
EGF_TEN
vWA_SIBA-E
SEA
I-set
Motif
Other DBs
NCBI-GeneID:
128530011
NCBI-ProteinID:
XP_053359668
LinkDB
All DBs
Position
9:complement(469806..491328)
Genome browser
AA seq
1921 aa
AA seq
DB search
MGRWAWHLNGLFLFLTLIGHHNVNANRCVASKATSCSACVQIGFGCAYCPDEVFGFDRCD
LLENLKSHGCAKAISVQSSMTRLENIKTDKNMKHSWVAPQQMKMTLLPGEEREVEMEVFE
PARGPLDLYILMDFSNSMSDDLDNLKKMGDKLAELVGTLSDDYTIGFGKFVDKVTEPQTD
MRPSKLKEPWTNSDSPFSFKHVITLTSNITTFRQILQKERISGNLDAPEGGFDAILQATV
CQSQIGWREHSTHLLVFSTESAFHYEGDGINVLAGILPRNDEACHLDSTGQYTHDKQQDY
PSVPTLVRVLVQNNIIPIFAVTNHSLSYYEKLHQYFPIAELGVLTDDSSNILNIIKSSFD
SIRSKIVIQAENKPKAIGAQVFSASSREESKHGNFNIQPGEIGKFKVLLNAKTSVNDKPV
CSLNTNEREGMIRVKPTTFSSALQIQTSVLCKTCDCELNPTPKASRCSGNGDLVCGTCRC
YDKWLGPFCNCSSQVSSGANECKEPGTEEPCNGRGDCLCGTCLCYNPNQYEGQYCQYDRS
QCHRSGGFLCNDRGRCYMGKCACDEGWTGDACECPLSNATCLDNKGGLCNGHGVCKCGRC
ECTYSELELGAACEPNFQAQLGMCESRRSCAQCQAWKTGEMKGEKCKSCPFTIKMVDELK
DRDKVIETCEYRDEEDDCTYYYTVNYPANPTDKEHEVEVLKKKDCPPGGFLWLIPLIMFL
MLLLGLLLLCCWKYCACCKACLARLCVCSPCCAMGRMVGFKEDHYMLRQSLLSSDHLDTP
MVRTGPPKSTDVVRWKVKDNVHRAPNHPQNQIQPNPKEIIDFPLSLRLHRPFSDELSRPE
SRNTEVLRQEVEENLNNVFRQIPGTHSVQKTRFRIQRNAGKRQNNTIVDTVLSAPRSTYR
DIANLTDKQVQAGNFSNMRVVPGYYTVATDREATGAVELQEGVESVDVRVPLFIKDEDDD
KKQLLVEAIDVPEGIATIGKRYVNITVIKEHAKSILTFLQPSYTFARQDGVANIPISRDI
IEDGRTQVTYSTRDLTAKDKKDYISVDGELTYLPGETQKNVPVKLMELGEGDTLLEKQPK
QFVMDLSNPRQGAKLGKYPRTTINIADKPDPSVIMFKNSTQNFNISDALYTVPVIRTQGL
ENPSTVNWRTVNSPRIHHSGLVKFAPGEMEKNIVIDSRTQQISSKPESFQLELYEPSTNS
LVRDRKTTLVNIVDPRGDNISKMSTVPNKASSPTGRISAPTNIEATATGPKKISLNWNPQ
SGAKGYKVKYWIYGDPEADAQVMDVKNTHAELTNLYPYCDYEMRVCSYNAQGDGDYSDIV
QCQTLEDVPSEPGRLAFNVIGPTVTQLSWAEPAEPNGVITAYEVVYTPINEDSKPIGPDK
KVKIDNPKKRMLLIENLQPSQTYCYKVRASNKVGWGPYRDATINLATQPHRPMSIPIIPD
IPIVDAEAGDEYDSFLMYSNEVLRSPTASTRPSVSEYSEDQVINGKWDQGFLFPGGSGSL
SRNISTSSTSYSLSPRPGGANQSMESTMTYITSKGGSMPRRHDIQMEDVILRKRSENRTY
YDNDGVRDSIVMSDLTGGFSDILSGSSFSQTTTTGYSLNSHVHNRSDDISEALQNLDRVL
QDTRLPRGVPETPSRLVFSALGPTALKVSWQEPHCEKPILGYCVLYQLLSGGEMKRMDIT
NPAQNSVVVQELLPNQSYLFKVKAQSQEGWGPEREGVITIESAVDPKSPLSPVPGSSFTL
STPSAPGPLVFTALSPETLQLSWDKPRKPNGEILGYVVTCEQLHGGGDQRSFQLSGNSDT
SLTVSDLSENVPYKFKVQAQTTQGFGPEREGIITIESQDGSMGQYGSQSVMRREVFNLPS
QSTSQTTHTMFTEPFITSDGMMMSSRQVTQHTEISGSVTRQVEMVQRGVTSTVTKKQYYE
A
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggtgggcgtggcaccttaatgggctgtttctctttctcaccctgattggtcat
cataatgtcaacgctaatcgttgtgtagcgagtaaagccaccagctgttccgcctgcgtg
cagatcgggttcggctgcgcatactgtcctgatgaggtgtttgggtttgatcgctgcgat
cttctggaaaatctgaaaagtcacggctgtgctaaagctatcagcgtgcagagctccatg
accaggttggagaacataaagactgataagaacatgaagcactcgtgggtggctcctcag
cagatgaagatgacgctgttacctggtgaggagcgagaggtggagatggaggtgttcgag
ccggcgcgtggtccactggacctctacatcctcatggacttctccaactccatgtctgac
gatctggacaacctcaagaagatgggggacaagctcgccgagttggttgggacgctctct
gatgattacacaataggattcggcaaattcgttgataaagtcactgaaccacagacagac
atgagaccatcaaagctgaaggagccgtggacgaacagtgactcgcccttctccttcaag
cacgtcatcactctcaccagtaacatcaccaccttcagacagatcctgcagaaggagaga
atatctggcaacctggacgctcctgaggggggattcgacgccatcctgcaggccaccgtc
tgtcagtctcagatcgggtggagggagcacagcacgcacctcctagtcttctccaccgag
tctgcttttcattacgaaggcgacggaataaacgtgttggcgggaattctgccgcggaac
gacgaggcgtgtcacctggacagtacgggtcagtacacacacgacaagcagcaggattac
ccatcagtccccacgctggtgcgggtgcttgtccagaacaacatcatccccatcttcgcc
gtcaccaaccactcgctctcctactatgagaaactgcatcagtatttccccatcgctgag
ctcggagtgctgacagacgattcctcaaacatcctcaacatcatcaagagctccttcgat
agtatccgatcaaagatcgtcatccaggctgagaacaaacccaaagccatcggagctcaa
gtcttctccgcgtcctccagagaggagtccaaacacggaaacttcaacatccagccggga
gaaatcggtaagtttaaagttcttctcaacgctaagacgagtgtgaacgacaagcctgtg
tgcagcctgaacaccaacgagcgcgagggaatgatcagggtcaaacccaccacgtttagc
tccgccctccagatacaaacctccgtcctgtgtaaaacctgcgactgtgagctgaacccg
acacctaaggcgtcgcggtgcagcgggaacggagacctggtgtgtggaacgtgccgctgc
tacgacaaatggctcggcccgttctgtaactgctcgtcccaggtgtcctcgggggcgaac
gagtgcaaggagccggggacggaggagccgtgtaacgggagaggagactgtctgtgtggg
acgtgtctctgttacaaccccaaccagtacgagggacagtactgtcagtacgacaggtca
cagtgtcaccgctcaggggggttcctctgtaacgatcgaggccggtgctatatgggaaag
tgtgcgtgtgatgagggatggacaggagacgcttgtgagtgtcctcttagcaatgcaacc
tgcctggacaacaaagggggtttgtgtaacggtcacggtgtgtgtaaatgtggacgctgt
gagtgtacgtactccgaactggagctgggagcagcgtgtgaaccaaacttccaggctcag
ttggggatgtgtgagagcaggaggagctgtgcacagtgtcaggcctggaagaccggagag
atgaaaggagagaagtgtaagagctgtcccttcaccatcaagatggtggatgagctgaag
gacagagataaagtgatcgagacgtgtgagtatcgtgatgaagaagatgactgtacgtat
tactacaccgtgaattatcctgcaaatcccactgataaggagcacgaggtggaggtgctc
aagaagaaagattgccctccaggaggatttctctggttgattcctctcatcatgttcctg
atgctgttgttgggtctcttactgctctgctgctggaaatactgcgcatgctgcaaggcg
tgtctggctcggctgtgtgtgtgcagcccgtgctgtgccatgggtcgtatggtgggattt
aaagaagatcactacatgctgcgtcagtccttactgagctcggaccacctggacacgccg
atggttcggaccgggccgcccaagagcacggacgtggtgcgctggaaagtgaaggacaac
gtgcaccgcgcaccgaaccaccctcagaaccagatccaacccaaccccaaagaaatcatc
gacttccctctctcactgcggctccacagaccgttttctgatgaactttcgcgtcctgaa
tctcgcaacactgaggtcctcagacaggaagtggaggagaatcttaataacgttttcagg
caaattcccggcactcactcggtgcagaaaaccagattcaggattcagagaaatgcagga
aagaggcagaacaacacaatcgtggacactgtcctctcagctcctcgctccacctacaga
gacattgctaacctgaccgataaacaggtgcaggctgggaacttcagcaacatgagagta
gttcctggatactacaccgtggccacggacagagaggcgacaggggccgtggagctgcag
gagggcgtggagtctgtggacgttcgggttccactcttcatcaaagatgaggatgatgat
aagaaacagctgctggtggaggccatcgacgttccggagggaatcgccaccattggaaaa
cgttacgtcaacatcacagtgattaaagaacatgctaagagcattctgaccttccttcag
ccctcatacaccttcgctcggcaagacggtgtagctaacatcccgattagccgcgacatt
attgaggacggtcgcactcaggttacctacagcacgcgtgacctcaccgccaaggacaag
aaggactacatctcagtggatggagaactgacgtacctgcctggagaaacacagaagaac
gttcctgtgaagctgatggagctcggggaaggagacaccctgttggaaaaacagcccaaa
cagtttgtgatggatctgagtaacccgcgtcagggcgctaaactcgggaaatacccacgg
accaccatcaacatcgctgacaagccagatcccagtgtgatcatgttcaagaacagcact
cagaacttcaacatatctgatgcgctctacaccgtccctgtgattcgcacccaggggctg
gaaaatccttctactgttaactggcgcaccgtgaactccccccgcatccaccactccggc
ctggtcaagttcgccccgggagagatggaaaagaacattgtgatcgactctcgtacacag
cagatttcctccaaaccagaaagcttccagctggagctgtatgagccgagcactaatagc
ctcgtccgagacaggaagaccaccttggtcaacatcgttgatcccagaggagataacatc
tctaaaatgtcaactgttccaaataaagcctcatctcccactggacgaatctctgctcca
actaacattgaagctacagctacagggcccaaaaagatcagccttaactggaaccctcag
tctggagccaaaggttataaggtaaagtactggatctatggagaccctgaagcagacgct
caggtgatggacgttaaaaacactcatgctgaactgacgaatctctacccgtactgcgat
tatgagatgcgtgtgtgttcatacaatgctcagggagatggggactacagtgacatcgtg
cagtgccagactcttgaggatgtcccaagtgaaccaggtcgcctggctttcaatgtcatt
ggtccaactgtcactcagctgagttgggcagaaccagcagagcccaacggtgtgatcacg
gcgtatgaggttgtctacacacccatcaatgaggacagcaaacccattggacctgataag
aaggtgaagattgacaaccccaagaagcgcatgctgcttattgagaatctgcagccctca
cagacttactgctacaaagtgcgcgctagcaacaaggtgggatggggaccgtacagagac
gccaccatcaatctggcaacacaacctcacagacccatgtccattcccattattcctgac
attcccattgtggatgcagaggcaggagatgagtatgacagctttctcatgtacagtaat
gaagttcttcgttctcccaccgccagcaccagacccagcgtgtctgagtactctgaagac
caggtcataaatggaaagtgggatcaagggttcttgttcccaggtggaagtggctccttg
tcacgcaacatcagcacttcttcaaccagctatagcctctcacctcgcccgggtggggcc
aaccagtcaatggagtccactatgacttacataaccagcaaaggaggatctatgcctcgc
aggcatgacatccagatggaggacgtgatcttgagaaaacggtccgaaaacagaacttat
tatgataacgacggtgtgagagactccatcgtgatgagtgacttgactggaggattctct
gacattctgagcggttctagcttcagccagactacaactaccggttacagcctcaactcc
cacgttcacaatcgctcagatgacatcagtgaagctctgcagaacctggacagggttctc
caggacacccggctgccacgtggggtccctgaaaccccaagcaggctggtgttttcagct
ctgggccccacagcactgaaggtcagctggcaggaaccccactgtgaaaagccaatatta
ggatactgtgtgctctaccagcttctcagtggaggtgaaatgaagcgcatggacatcact
aacccagcgcagaactccgtggtggttcaggagcttctgcccaaccagtcctacctgttc
aaggtgaaagctcaaagtcaggaaggctggggtcctgagagagagggagtcatcactatc
gagtctgctgtcgaccccaagagccccctcagccctgtgccaggttcttcattcacgctg
agcacacccagtgctccaggtccactggtgttcaccgctttaagtccagagactctccag
ctcagctgggataaaccacgaaaacccaacggcgagatcctgggctatgtggtcacgtgt
gaacagctgcatggtggaggagaccagcgctccttccagctcagtgggaactcggacacg
tctctgaccgtttctgatctgagcgaaaacgtgccgtataaatttaaagtccaggctcag
accacgcagggcttcggtccggagagagagggcatcatcaccatcgagtctcaggatggc
tctatgggtcagtacggcagtcagtctgtgatgaggagagaggtgtttaatttgccatcg
cagagcacgtcacagacaacacacaccatgttcactgaacccttcatcacctcagatggt
atgatgatgtcgagcagacaggtcactcagcacacggagataagcggcagtgtcacacgt
caggtggagatggtgcagagaggcgtgacgtccaccgtcaccaagaaacaatattatgaa
gcctga
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integrated database retrieval system
