Clarias gariepinus (North African catfish): 128530141
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Entry
128530141 CDS
T10780
Symbol
abcd1
Name
(RefSeq) ATP-binding cassette sub-family D member 1
KO
K05675
ATP-binding cassette, subfamily D (ALD), member 1 [EC:
7.6.2.4
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar02010
ABC transporters
cgar04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128530141 (abcd1)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
128530141 (abcd1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cgar02000
]
128530141 (abcd1)
Enzymes [BR:
cgar01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.4 ABC-type fatty-acyl-CoA transporter
128530141 (abcd1)
Transporters [BR:
cgar02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD1 subgroup
128530141 (abcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_21
Rad17
AAA_29
AAA_23
Adeno_IVa2
SMC_N
ORC-CDC6-like
AAA_5
Motif
Other DBs
NCBI-GeneID:
128530141
NCBI-ProteinID:
XP_053359854
LinkDB
All DBs
Position
9:5074715..5102697
Genome browser
AA seq
780 aa
AA seq
DB search
MPVVYSKLPSQLKRSSAAKKAVLLLVAAYGVKRLYPYISERLKGRTDPRNGRLNAHQKNG
EPLEVTERQKRKRNSPAVNREFLLRLKRLLSILFPRLFCKELGLLGFHSIALISRTFLSI
YVANLDGKIVKTIVKKDPQAFVWELTKWLLIAIPATFVNSTIRYLEGQLTLAFRTRLVNH
AYELYFSNQTYYRVSNMDGRLANPDQSLTEDMVMFAGSVAHLYSNLTKPCLDVVMTCYTL
IKTGQSKGANTTWPSVIAGIVVALTAKILRAFSPRFGKLVAEEAKRKGDLRYMHSRIIAN
SEEIAFYGGHKVEMSQLQRSYEALRSQINLILFKRLWYVMLEQFLMKYLWSASGLVMVAV
PIITAVGYSTRDSADVKQAVMVMSEEEMVSERTEAFTTARNLLNAGADAVERIMSSYKEV
TELAGYTARVYEMFDVFEEVRVGVFRRSVEDPQGTENRGGSREVKHGMRLEGPLHIRGQV
IDVEQGIRCENLPIITPTGDVVASSLNIKVDEGMHLLITGPNGCGKSSLFRILSGLWPVY
SGVLYKPPPQHMFYIPQRPYMSVGTLRDQVIYPDTHQEMQERGFTDQQLEGILRTVNLLY
ILEREGGWNAESDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFEAA
KDAGIALLSITHRPSLWKYHTHLLQFDGEGGWRFEKLDASTRLSLQDEKLRLETQLSGIP
KMQQRLSELCSILGENSSLVTPTEMEGERRGEEEERERKQQEEREERHALPGEQGRGLME
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtagtatattccaaacttccctcacagctgaagaggtcttcagcagccaagaaa
gcggttttactcctcgttgctgcatacggagtaaaaagactctacccgtacatttctgaa
agacttaaaggacggaccgatcctcggaatgggagactgaacgcacatcagaagaacggg
gagccgctggaggtcacggagaggcaaaagaggaagagaaactctccggctgtaaaccga
gaattccttttgcgcttgaagcggctcctgagcatccttttccctcggcttttctgcaaa
gagctgggtctgctgggcttccactcgatcgctctcatctcgcgcacattcctgtctatt
tacgtcgccaacttggacggtaaaatcgtgaaaaccatcgtgaagaaagacccccaggcg
ttcgtgtgggagttaacgaaatggctcttgatcgctatccctgcaacgtttgtaaacagc
actatccgttatctggaaggacagctaactctggcgtttcgcaccaggctggtgaaccat
gcctacgagctctacttcagcaaccagacctattaccgtgtcagcaacatggatggcagg
ctggccaacccggaccagtcactgacagaggacatggtgatgtttgccggctctgttgct
catttgtactccaacctgacgaagccctgcctggacgtagtgatgacctgctacacgctg
atcaaaacgggacagtctaaaggcgccaacacgacttggccttcggtgatcgccggcatc
gtggtggcgctcaccgccaaaatcctgcgggcgttttcgccgcgcttcggcaagctggtc
gcagaggaggccaagaggaaaggggacctgaggtacatgcactcgcgcatcattgccaac
tcggaggagatcgccttctacgggggtcacaaggtggagatgtcgcagctgcagcggagc
tatgaggcgctgcgttcgcaaatcaacctgatcctcttcaagcggctatggtacgtcatg
ctcgaacagttcctcatgaagtacctatggagcgcctcaggactcgtcatggtggccgtg
cccatcatcaccgccgtggggtactccacacgtgattccgcggacgtgaagcaggcagtg
atggtgatgagcgaagaagagatggtgagcgagcgaacagaggcctttaccacagccagg
aatcttttaaacgcgggagccgatgccgtggagcggatcatgagctcctacaaggaggtg
actgagctggcaggctacacagcacgtgtttatgagatgtttgatgtgtttgaggaggtg
cgtgttggtgtgtttcgccgatcagtcgaggaccctcagggcacagagaaccgtggtggg
tcacgtgaggtgaaacacggtatgagattagaggggcccttacacattagaggtcaagtg
attgatgtggaacaaggcatcaggtgcgagaacctgccaattataacacccacaggcgat
gtggtagcatcaagcctcaacatcaaggtggacgaaggaatgcatctgttaatcaccggc
ccgaacggctgcggtaaaagctctctgtttcggattctgagcggcctgtggcccgtgtac
agcggtgtcctgtacaaacctccgccacagcacatgttctacatcccacagaggccatat
atgtccgtgggcactctgcgggatcaggtgatttaccccgacacgcatcaggagatgcag
gagcgaggcttcactgatcagcagcttgagggaatcctgcgcaccgtcaacctcctttat
attctcgagagagagggaggttggaatgcagaaagtgactggaaggatgttctgtctgga
ggagagaagcagagaatgggcatggccaggatgttctaccacaagcccaaatacgctctc
ctggacgagtgcaccagcgccgttagtatcgacgttgagggcaaaatctttgaagccgca
aaggatgccgggatcgcgcttctctcgatcacacaccgtccatctctgtggaagtaccac
acccacctgctgcagtttgatggcgagggtggctggcgcttcgaaaagctggacgcgtcc
actcggctctcgctgcaggacgagaagctgcggctggagacacagctctcagggatcccc
aaaatgcagcagcgtctgtctgaactgtgcagcattctgggtgaaaacagcagtctggtg
acccccacggagatggagggggagcgacggggggaggaggaggagagagagaggaagcag
caggaggagagggaggagagacacgcgctccccggtgaacagggacgaggccttatggag
tga
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