Clarias gariepinus (North African catfish): 128530200
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Entry
128530200 CDS
T10780
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a
KO
K19719
collagen type II alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
cgar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128530200 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
Amnionless
Motif
Other DBs
NCBI-GeneID:
128530200
NCBI-ProteinID:
XP_053359949
LinkDB
All DBs
Position
9:14428141..14450759
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AA seq
1493 aa
AA seq
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MYRFVDSRTVLLLVATQCILLSVVRCQREDDQEDLGGCIQDGQHFEDRAVWKPEACRVCV
CDSGSVLCDEVICEELKDCNNPIIPSGECCPICPADQDQTSETFGARGQKGEPGEIANVQ
GPRGPAGPMGPPGEQGPRGERGPKGEKGSAGPRGRDGEPGTPGNPGPPGPPGPPGPNPPG
LGGNFAAQMAGGFDEKAGGANLGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEAGEPG
PSGPMGPRGPPGPPGKSGSDGKNGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGHPG
LDGSKGETGAAGAKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAG
PPGPVGPSGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGESGTPGSPGPAGASGNPGTDG
IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERG
VAGPQGAPGPIGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLPGAKGAPGDRG
VAGSSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQG
TRGQPGVMGFPGPKGANGEPGKPGEKGLIGAPGLRGLSGKDGETGAAGPPGPAGPAGERG
EQGQPGPPGFQGLPGSAGPPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGSAGPQG
LQGPRGLPGTPGTDGPKGAIGPAGSPGAQGPPGLQGMPGERGSAGISGPKGDRGDSGEKG
PEGAPGKDGSRGLTGPIGPPGPSGPNGAKGETGAIGPTGPAGARGAPGDRGEVGAPGPAG
FAGPPGADGQPGIKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPG
ATGFPGAAGRVGPPGPNGNPGPVGPAGASGKDGPKGVRGDAGPPGRPGDAGLRGPPGLPG
EKGEAGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGATGSSG
ERGPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAPGVKGERGNTGPVGAPGAPGAPG
SPGPVGPVGKQGDRGENGPQGPAGPPGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRG
FTGLQGLPGPPGSPGDQGAAGPSGPSGPKGPPGPVGPAGKDGANGIPGPIGAPGPRGRSG
EGGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPMRYMRADEASNNLRQHDVE
VDATLKSINSQIEDIRSPDGSRKNPARSCHDLKLCHPDWKSGDYWVDPNLGCTADAIKVY
CNMETGETCVKPTTSSIPRKNWWSNKGKGQKHIWFGENMSGGFHFSYGEKVPTPNVASIQ
MNFLRLLSSEASQSITYHCKNSVAYMDEATGNLKKALLLQGSNDVEIRAEGNSRFTYSVV
EDGCKKHSGQWAKTVIEYKTQKTSRLPIVDIAPLDVGGANQEFGVDIGPVCFL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgtacagatttgtggactcacggactgtcctgctacttgtagcgacacaatgtattttg
ctatccgttgtcagatgtcaacgagaggatgaccaggaggacttaggcggctgcatccaa
gatggccagcatttcgaggatcgtgcagtgtggaagcctgaagcgtgtcgggtctgtgtg
tgtgactcggggtcagtgctgtgtgatgaggtcatctgcgaggagctgaaggattgcaac
aatcccatcattccatccggagagtgctgccccatctgccctgctgaccaagaccagact
agcgaaacctttggtgcaaggggacaaaaaggagaacccggcgagattgcaaatgttcaa
ggaccaagaggaccagctggccccatgggaccacctggagagcagggaccacgtggagag
agaggccctaagggtgagaagggaagtgcaggacccagaggaagagatggcgagcccggc
acgccaggcaaccctggacctcccggaccccccggaccacccggaccaaacccacctgga
cttggaggaaactttgcagctcagatggctggaggttttgatgagaaagctggaggagct
aacttgggagtgatgcaaggtccaatgggccccatgggtccccgtggtccccctggcccc
actggagcacctggcccacaaggattccaaggcagcccaggagaagctggcgaacccgga
ccttctggccctatgggacctcgtggcccacctggaccacctggaaaatctggaagtgat
ggtaagaatggcaaacctggtaagcctggtgaccgtggacccactggacctcagggagct
cgtggattccctggaacccctggacttcctggcatcaaagggcacagaggtcacccaggt
cttgatggttctaagggagagactggagctgctggagctaagggtgagtcaggtgcacct
ggtgagaacggcgcccctggaccgatgggccctcgtggtcttcctggtgagagaggacgc
cctggaccctctggagctgctggtgcccgtggtaatgatggtcttcctggccctgctggt
cctcctggtcctgtcggtccttctggtgccccaggtttcccaggatcccctggttccaag
ggtgaggctggacctactggtgctcgtggagctgagggagcccaaggaccccgtggagag
tctggcactccaggttctcctggacctgctggagcctctggaaaccctggaactgatggc
attcccggagccaaaggatctgctggtgcccctggtattgctggtgccccaggtttccca
ggacctcgtggcccacctggacctcagggagctactggaccccttgggcccaagggccag
agtggagaccctggtatcccaggatttaagggagaggctggaccaaaaggagagaggggt
gttgcaggacctcagggggccccaggcccaatcggtgaggagggtaagagaggacctaga
ggagagcccggatctgctggccctcttggacctccaggagagagaggagctccaggtaac
cgcggattccctggtcaggatggacttcctggtgctaagggtgcacctggtgatcgtggt
gttgctggatcatctggaccaaaaggagctggtggagatcctggtcgtcctggcgagcct
ggtcttcctggagcaagaggtctcactggccgtcctggtgatgctggaccccaaggaaaa
gttggcccaagtggtgctcctggtgaggacggtcgtcctggtccccctgggcctcaggga
actcgtggccagcctggtgtgatgggtttcccaggacccaagggagccaatggagagcct
ggcaaacctggagagaaaggacttattggtgcccctggtctcagaggtttatctggtaaa
gatggtgagactggagctgctggtcctcctggccctgctggtcctgctggagagagaggt
gaacaaggacagcctggtcctcctggcttccagggtctgcctggatctgctggaccacca
ggagagggtggcaaaccaggtgaccagggtgttcctggagagggtggtgcccctggtgca
gttggaccacgaggtgagcgtggtttccctggtgagagaggaagtgctggaccccagggt
cttcagggacccagaggacttcctggaactcctggaactgatggacctaagggtgcgata
ggcccagctggtagccctggtgcccagggtcctcctggtctgcagggtatgcctggtgaa
agaggttctgctggtatttctggacctaagggtgacagaggtgactctggagagaaaggc
cctgagggagctcctggcaaagatggttcaagaggtttgactggccctattggtccacct
ggtccttctggtcccaatggagctaagggtgaaactggtgctattggcccaactggacct
gccggggctcgtggtgctcctggtgaccgtggtgaggttggagctcctggacctgctggt
ttcgctggaccccctggtgctgatggccaacctggaattaaaggagagcagggagagtca
ggccaaaaaggagatgctggatcccctggaccgcaaggaccctctggagcccctggtcca
gttggccccactggtgtcactggacctaaaggagctcgtggagcacagggagccccaggt
gccactggtttcccaggtgctgctggaagagttggaccacctggtcctaatggtaaccct
ggccctgttggccctgctggtgcttctggtaaagatggtcccaaaggagtgcgtggtgat
gctggtcccccaggaagaccaggagatgctggactgcgtggacctcctgggctccctgga
gagaagggagaggccggagaggatggcccccctggtcccgatggtcctagtggtcctgca
ggtttagctggtcagcgtggtattgttggtctgcctggtcagcgtggtgagagaggtttc
cctggccttcctggaccttctggtgagcctggcaaacagggtgctactggatctagtggt
gaacgtggcccccctggccctgttggacccccagggctgactggacctgctggagaaact
ggtcgtgagggtaatcctggatctgatggtcctcctggcagagatggtgctcctggtgtg
aagggtgaacgtggtaacactggtcctgtgggtgcccctggtgctcctggtgcccctggc
tctcctggtcctgttggtcctgtaggcaaacagggagacagaggagagaatggaccacaa
ggacctgctggacctcctggacctgctggagcaagaggcatggctggaccacaaggtcct
cgtggagacaagggagaagctggtgaggctggagaaagaggacagaagggacacagagga
ttcactggtctgcagggtcttcctggacctcctggttctccaggtgaccagggtgctgct
ggaccttccggacctagtggacctaagggaccccctggacctgttggcccagctggaaag
gatggtgcaaatggtatccctggacccattggagcccctggacctcgtggacgctctgga
gaaggtggcccagctggtcctcctggtaaccctggtccccctggtcctcctggtcctcca
ggccctggcattgatatgtctgcctttgctggactgggtcaaactgaaaagggcccagat
cccatgcgttacatgcgtgctgatgaggcctctaacaatctgagacagcatgatgtggag
gttgatgccaccctgaaatccatcaacagccagattgaggatatccgcagccctgatgga
tctcgcaagaaccctgctcgctcctgccacgaccttaaactctgccaccctgactggaag
agcggtgattactgggtggatcctaaccttggctgcactgctgatgccatcaaggtctac
tgcaacatggagactggagaaacatgtgtgaagcccactacaagcagtattccacgcaag
aactggtggagcaacaagggcaagggacagaagcatatatggttcggcgaaaacatgagc
ggtggcttccatttcagctatggtgagaaggtcccgactccaaatgtggccagcatccag
atgaacttcctgagattgctttctagcgaggcctctcagagcatcacctaccactgcaag
aacagcgtggcgtacatggatgaagccactggcaacctgaagaaggctcttctgctgcag
ggctccaacgatgtggaaatcagagcagagggtaacagccgatttacatacagcgtggtg
gaggatggctgcaagaaacactcaggccagtgggctaagactgtgattgagtacaaaact
cagaagacatctagactgcccattgtggacattgctcctttggacgtcggtggagctaat
caggagtttggagtggacattggaccagtctgtttcttgtaa
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integrated database retrieval system
