Clarias gariepinus (North African catfish): 128530309
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Entry
128530309 CDS
T10780
Symbol
hcfc1b
Name
(RefSeq) host cell factor 1b isoform X1
KO
K14966
host cell factor 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03083
Polycomb repressive complex
cgar04980
Cobalamin transport and metabolism
cgar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
128530309 (hcfc1b)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
128530309 (hcfc1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128530309 (hcfc1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgar01009
]
128530309 (hcfc1b)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128530309 (hcfc1b)
03029 Mitochondrial biogenesis [BR:
cgar03029
]
128530309 (hcfc1b)
Protein phosphatases and associated proteins [BR:
cgar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128530309 (hcfc1b)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
128530309 (hcfc1b)
HMT complexes
COMPASS/SET1 complex
128530309 (hcfc1b)
MLL-HCF complex
128530309 (hcfc1b)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
128530309 (hcfc1b)
Mitochondrial biogenesis [BR:
cgar03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
128530309 (hcfc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_ATRN-LZTR1
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
128530309
NCBI-ProteinID:
XP_053360151
LinkDB
All DBs
Position
9:complement(4758128..4775637)
Genome browser
AA seq
1954 aa
AA seq
DB search
MTSSGTNTTSSGTVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELH
VYNTATNQWFIPAVRGDVPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEW
KRLKPKAPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELRP
GSNVAGWDIPITYGVLPPPRESHTAVVYTEKTSKKSRLVIYGGMSGCRLGDLWTLDIDTL
TWNKPAISGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLN
LDAMTWETILMDTLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYLE
TDRPLAPSRVQLVRANTSSLEVSWGAVPTADAYLLQLQKYEIPAATSASSPSVTPTSSLP
LNSPKSPAPAAAAPATQAVPVTGVTLVPQVPSPTTSMPGSPLAAASPRGPGKTILKVAAP
QSTAGASVVTVRQANQVGKSPVTVASLPAGVRMVVPAQGAQGTPIGSSPQMSGMAALAAA
AAATQKIPPSTAATMLNVPAGATIVKTVAVTPGSTALPAAVKVASPVTTYLGYSHMTKVS
NPATRLLKTAAAQAGTSTITTPNTPTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITL
VKSPLTVGSGGTLISSLGKVMSMVQTKPVQSAAVTGQAGSPVTQIIQTKGPLPAGTILKL
VTSADGKPTTIITTTQAGGAGTKPTILGISPTTTTKPGTTIIKTIPMSAIQQGAAGSSYG
ATSSTGIKSPITIITTKMVTPGTPGKIITAVPKLAAGAGQQGVTQVVLKGAPGQPGTILR
TVPMGGVRLVSPGTVSAVKPTVTTLVVKGTTGVTTLGTVTGTISTSLAGGNVPSANASLA
TPITTLGTIATLSSQVITPTAITVSAAQSNLTTAPTVAIQAATQPTQVTLISTPTGVEAQ
QDLPVSILASPTSEQPSTTGAEAGDAPGEVTLVCSNPPCETHETGTTNTATTASAKIGTE
RVCSNPPCETHVTGTTNTTTTASSDMGRVQQVCSNPPCETHETGTTSTSTQASSNMGTET
STVQRVCSNPPCETHETSTTNTATQASSSMGSAETNTVQRVCSNPPCETHETGTTNTATQ
ASSSMGSTETNTVQRVCSNPPCETHETGTTNTATQASSSMGSAETNTVQRVCSNPPCETH
ETGTTNTATQASSSMGSAETNTVQRVCSNPPCETHETGTTNTATQASSSMGSAETNTVQR
VCSNPPCETHETGTTNTATQASSSMGSAETNTVQRVCSNPPCETHETGTTNTPTQSSSTM
GAGQNGMVQRVCSNPPCETHETGTTNTATTATSSLESADGTVQQSGNGQDAGTSAEATSS
TEPANPPIQSRAITTVTQSTPTPGPSVPEISSMAGSAAVVEGSGEAEAMEQGDSEAVAMG
EEPMQTEGELGEEGAVRVVAIEEGAAGDAGTMLQVHVAMEAQPGQGEQAEMEQGGEGAEA
VALAGQDSEALALPQELMSAEGQQTTLMVTGLTPEELAVTAAAEAAAQAAATEEAQALAI
QAVLQAAQQAVLNEGDSGHDGQQTTTIPIVLTQQELAALVQQQQQLQEVQAAAAAAVAAQ
QLGTDSGAATLPTEGLAPADSLNDPTTESNGHEMAAAAVTAAVAQLLPSTSAETLAPSST
LAPVQPMVVASPAKIQAATALAEVANGIESVAGKPGAPPAVAKPPVKKENQWFDVGIVKV
TNMVVTHYYVPADDSEVTDDDSGAIPDYSQMKKVELSPGTAYKFRVAGINACGRGTFSEV
SAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQTTEAKAS
APAQLAFMRVYCGPNPSCLVQTSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQ
ETSKDGSAAKPAAKRPVSSPDTKGTGPKKARADQ
NT seq
5865 nt
NT seq
+upstream
nt +downstream
nt
atgacttcttctggtaccaacacgacatcgagcggcacggtgctccagccgaggtggaag
cgtgtactcggctggtcgggcccggtgcctcggcctcgtcacggccaccgcgccgtcgcc
attaaggagctcatggtggttttcggcggcggcaacgaaggaatcgtggacgaacttcac
gtgtacaacacagcgactaatcagtggtttatcccggctgtccgaggtgatgtgccaccc
ggctgtgctgcatatggattcgtgtgtgacggcacccggctgttggtgtttggaggaatg
gttgagtacgggaaatacagcaacgatctctacgagctacaggccagtagatgggagtgg
aaacgactgaaacctaaagctccaaagaacggcccacctccttgtccacgcctgggtcac
agcttctctcttgtcgggaacaaatgctatctattcggcggactcgccaacgacagtgaa
gatcccaaaaacaatattccaagatacctaaatgacctgtacacactcgagctgcgcccg
ggctctaacgtggcaggctgggacatccccatcacatacggtgtgcttcctccaccacgc
gagagccacacggctgtggtctacacagagaaaacctcgaagaagtctcgcctcgttatc
tacggaggcatgagcggctgccgcctcggagacctctggacgttagatatagacacactt
acttggaacaagccagcaataagtggcaccgctcctctccctcgcagtctccattctgcc
accaccataacaaacaagatgtatgtgtttggcggatgggtgcccttggtgatggatgac
gtgaaagtggctacacatgaaaaggaatggaagtgtacaaacacactagcatgcctgaat
ctggatgcaatgacatgggagactattttaatggacactctggaagacaacatcccacga
gccagggcagggcactgctccgtagccatcaactccagactgtatgtttggagtggcaga
gacggctaccgcaaagcctggaacaaccaagtgtgctgcaaagatctctggtatttggag
acagaccgccctctggcgccgtctcgcgtccagctggttcgtgccaacacaagttccctg
gaggtgagttggggcgctgtgcccactgccgacgcctacttgctgcagctgcagaaatac
gaaattccagcggcgacgtcagcttcctcccccagcgtcactcccacttcctcattgccc
ttgaactcgccgaaaagcccggccccagccgcagctgcccctgccactcaggctgttccc
gtcactggggttaccctggtaccccaggtgccctcaccaactacgtccatgcctgggagc
ccgctcgctgcagcctcgccgcgtggtccaggtaaaaccatcctgaaagtggcagcacct
cagtccactgctggggcgtctgtcgtcactgtacgtcaggccaatcaagtgggaaaatct
ccagtcacagtcgcatcacttcccgccggagtccgcatggtcgttcctgcacagggcgca
caaggaacaccgattgggagcagccctcagatgagcggcatggctgcactggccgcagct
gcagctgcgacacagaaaatccctccttcaacagcagccaccatgttaaacgttcctgca
ggagccaccatagtgaaaacagttgcagttactccaggctccacggctcttcctgctgca
gtgaaggtcgcctcaccagtgaccacataccttggctactctcacatgacaaaagtgagc
aacccagccacccgcctgctaaagacagccgcagctcaggccggaacttctaccatcacc
acccccaacacgccaacacgtcccatcatcacggtgcacaaatcgggcacagtgactgtg
gcccagcaggcccaggtggtcaccaccgtggtgggaggagtcacgaaaaccatcacactc
gtcaagagcccgctcactgtgggcagcggcggcacgctgatctctagcctgggcaaggtg
atgtccatggtccagactaaaccagtacagagtgctgcagtgacaggccaagctggcagc
ccagtcacacagatcatacagacaaagggccctctacctgcaggcaccatactaaagcta
gtcacctcagcagacggcaaacccaccaccatcatcactaccacgcaggcaggtggcgct
ggcaccaaaccgaccattctgggcatctcccctaccactaccacaaagcctggcaccacc
atcatcaagaccatcccgatgtccgctattcaacagggagctgcaggttcgtcttacggt
gctaccagtagcactggtataaagtctcccatcacaattatcacaaccaaaatggtgaca
ccgggcacaccagggaaaatcatcacagcagtaccaaaactggctgctggagctggccag
cagggcgtgactcaggtggtcctgaagggagcgccaggacagcctggcaccattcttcgc
actgtgcccatgggtggtgtacgtcttgtttctcctggtactgtttccgctgtcaaaccc
acagttaccacgctggtggttaaaggcaccacaggagtaactactctcggcactgtgacc
ggaacgatctcgaccagcctggcagggggcaacgttccctctgccaacgctagcctggcc
acccccataaccaccttgggcactatcgccactctctccagccaggtaatcacccctaca
gcgatcactgtgtctgcagctcagtcaaacctgaccactgcacctacagtggccatacag
gcagctacacagcccactcaggtgacgttaataagcaccccgaccggcgtggaggcgcag
caggacctccccgtgtccatcctggcctcccccacctccgaacagccctccaccacaggc
gccgaagcaggcgacgccccaggcgaagtaaccctggtctgctccaacccaccatgcgag
acccacgaaaccggtaccaccaacacggccactacagcgtccgccaagatcggaaccgag
cgcgtgtgctccaacccgccttgcgagactcacgtgaccggaacgaccaacacgacgacc
acagcatcatccgacatgggccgtgtgcagcaggtatgcagcaacccaccgtgcgaaact
cacgaaacaggaaccacaagcacatctacacaggcgtcttcaaacatgggcacggagacc
agcacggtacaaagagtgtgttctaacccaccttgtgagacccatgaaaccagcaccacc
aacacagctacacaggcatcttccagtatgggcagtgcggagaccaacactgtacaaaga
gtgtgttctaacccgccgtgtgagacccacgagactggcaccaccaacacagctacgcag
gcgtcttcaagtatgggcagtacggagaccaacactgtacaaagagtgtgttctaaccca
ccgtgtgagacccacgagactggcaccaccaacacagctacacaggcatcttccagtatg
ggcagtgcggagaccaacactgtacaaagagtgtgttctaacccaccgtgtgagacccac
gagactggcaccaccaacacagctacacaggcatcttccagtatgggcagtgcggagacc
aacactgtacagagggtgtgttctaacccgccgtgcgagacccacgagactggcaccacc
aacacagctacacaggcatcttccagtatgggcagtgcggagaccaacactgtacagagg
gtgtgttctaacccgccgtgcgagacccacgagactggcaccaccaacacagctacacag
gcatcttccagtatgggcagtgcggagaccaacactgtacagagggtgtgttctaacccg
ccatgcgagacccacgagactggcaccactaatacacccacgcagtcttcatccacgatg
ggagcagggcagaatggcatggtgcagagggtgtgttccaacccaccatgtgagactcac
gagacgggcaccaccaacaccgctactactgccaccagcagcctcgagtcagctgatgga
acagtgcaacagagtggaaatggacaagatgctggcaccagtgccgaggcaacttcgtcg
acagaacctgccaatccaccaattcagagcagagccatcaccacagtgacacagtccacg
cccaccccaggaccctctgttcctgaaatctcatccatggcaggctccgctgctgtagtg
gagggctctggtgaagccgaggcgatggagcagggagactctgaggcagtggcgatgggc
gaggagcccatgcaaaccgagggtgaacttggtgaagagggagcagtcagagttgtcgct
attgaggagggtgctgccggggacgcaggcaccatgctgcaggttcatgttgccatggaa
gcgcagccgggccagggagagcaggcagagatggagcaaggtggtgagggagctgaggct
gtggctctggcagggcaggactccgaggccctagcactgcctcaggaactgatgtcagcc
gaggggcagcagaccacgctaatggtgacgggactgactccggaggaactggccgtgacc
gctgcggcagaagccgccgctcaggccgctgccacagaagaagcccaggcgctcgccata
caggctgtcctgcaggcagcccaacaggccgtgctcaatgaaggagactctggacatgac
ggtcagcagaccaccaccatccccatcgtactgacgcaacaggaactggctgcgttggtc
cagcagcagcagcaactccaggaggttcaagcagcagcggcggcagcagtcgctgcccaa
cagctcgggaccgattcgggtgcagcaactctgcccactgagggcctggcacccgcagac
agcctcaacgaccccacgaccgagagcaacggccatgagatggctgccgccgcggtaacc
gccgctgtggctcagcttctacccagcacttctgcagaaactttggctccatcgagtaca
cttgccccggtccagcccatggtggtcgccagccctgccaagatacaggctgccactgca
cttgctgaagtagccaatggcatcgagtccgtcgctgggaagccaggagctccccctgct
gttgcaaaaccgccagtgaagaaagaaaatcagtggtttgatgttggaatagtcaaggtg
accaacatggtcgttacacactattatgtcccagcagatgactctgaggttactgacgat
gattctggagccataccagactacagtcaaatgaagaaagtggagctctctcctggcacc
gcgtacaagttccgtgtggctggaatcaatgcttgtggtcgcggaacgttctctgaagtt
tcggctttcaagacctgcttgcctggcttccctggcgcgccatgtgccattaaaatcagc
aagagccccgatggcgctcacctcacttgggaacctccttctgtgacgtcagggaagatc
atcgagtactccgtctacctggccattcagagctctcagacaaccgaggcgaaggcatct
gccccggctcagctggccttcatgcgggtgtactgtgggccaaatccctcctgccttgtc
caaacttccagcctgtccaacgcccacatcgactacaccacgaaacccgccataatcttc
cggatcgccgcccgcaacgagaagggttacggccctgccacacaagtcaggtggctacaa
gaaaccagtaaagatggatctgctgccaaacctgcggcaaaaagaccggtctcatctcct
gatacgaaaggtaccggtcccaaaaaggccagagccgaccagtga
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