KEGG   Clarias gariepinus (North African catfish): 128530336
Entry
128530336         CDS       T10780                                 
Symbol
bcas2
Name
(RefSeq) pre-mRNA-splicing factor SPF27
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128530336 (bcas2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cgar03041]
    128530336 (bcas2)
   03400 DNA repair and recombination proteins [BR:cgar03400]
    128530336 (bcas2)
Spliceosome [BR:cgar03041]
 Complex B
  Other components
   Prp19 complex
    128530336 (bcas2)
 Complex C
   Prp19-CDC5 complex
    128530336 (bcas2)
DNA repair and recombination proteins [BR:cgar03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    128530336 (bcas2)
SSDB
Motif
Pfam: BCAS2 Tup_N Uso1_p115_C THOC7
Other DBs
NCBI-GeneID: 128530336
NCBI-ProteinID: XP_053360197
LinkDB
Position
9:complement(7011424..7017442)
AA seq 224 aa
MAGASSVAGEVFVDALPYFDQGYDAPGVREAAAALVEEETRRYRPTKNYLSYLPTPDFSA
FETEIMKNEFERLAARQPLELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
IENLELMAQYGTNAWKVSNDNLAFMIENAQKELQKVRKSIQDLNWQRKNDQLTAGAKLRE
LESNWVSLVSKNYEIERAIVQLENEVGQMRQQGDENKENIRQDF
NT seq 675 nt   +upstreamnt  +downstreamnt
atggcgggagcttcgtctgtagccggtgaggtgtttgtggacgctttgccgtattttgac
cagggctatgacgctcccggagtcagagaagcagccgctgcgttggtggaggaggaaacc
cggagatacagacctacaaaaaattacctgagttacctcccgacgccggacttttcagct
tttgaaaccgagatcatgaagaacgagtttgagagactcgctgcacgtcagccattggag
cttttgagcatgaagaggtacgagctgcccgctccatcgtcaggccagaagaacgacata
acggcatggcaggagtgcgtgaataactcgatggcccagctcgagcaccaggcagtgcgc
atagagaacctggaactcatggcacagtacggcaccaacgcctggaaggtgtcgaacgac
aacttggcgttcatgattgaaaacgcacagaaggagctgcagaaggttcggaagagcatt
caggacttaaactggcagagaaaaaacgatcagctcaccgcaggcgccaagctgcgagaa
ctggagtccaactgggtgtccctcgtgagtaagaactatgagatcgagcgagccatcgtg
cagctggagaacgaagtcggccagatgagacagcagggagacgagaacaaggagaacatc
cgacaggacttctag

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