Clarias gariepinus (North African catfish): 128530339
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Entry
128530339 CDS
T10780
Symbol
smarcad1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128530339 (smarcad1a)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128530339 (smarcad1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
CUE
ERCC3_RAD25_C
DFF-C
T2SSK
Spt5-NGN
Motif
Other DBs
NCBI-GeneID:
128530339
NCBI-ProteinID:
XP_053360204
LinkDB
All DBs
Position
9:complement(17328936..17338661)
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AA seq
981 aa
AA seq
DB search
MSLFNLERFRYQKEKTTEHVLPSVSSPKQERYRLVNDCSSEKENYPERRVKPDGRRGRGK
IPRHALEDVSSDDEACKRARVPTTQASARKATVCEKQTNLEMEDKLTKLLEMFPQRSRSE
LQEVIESTSTLEGAIAYCLVAYKEKDSSKTKGRAAHSDDAEMQPKKRRKTEEPDIEPGSE
EETQKPSREKRDILVQKLKKKFPKMEKVVLRDILREHEWDFENALGSLLLFSSESDSIPE
ENEKVMPKPSKSSQVSSGDGKEKPTSSNLARWLTPVSSKSPSRAKSPSNSSTSRQGKTSS
RKPEKLKAERLKPEHKEESDNSEPDSEVEDESDEFDVEGEDNSFDSRVQEQILNFFQESS
VDELSLISGCSLKKAQKIISLRPFNTWKDVNEQFHKDNGLSMDLVHGCKNVLKERQVVKQ
LMNKCESIAKKMTKDITGVIGLGGMKQPTTLNSKLKLQPYQLIGLKWLILLHQHNLSGIL
ADEMGLGKTIQAISFLAYLYQKGIKGPHLITVPSSTVDNWVRELELWCPSLKVIVYYGSV
EDRKYLRHEILNNQVEFNVIVSTYNLTIGNENDRSLFRKLKLQYAVFDEGHMLKNMNSLR
YRHLMAINAEQRLLLTGTPLQNNLLELISLLNFIMPSMFSSSTSQISKMFSTKSSEEESS
FHKERIAQAKLIMKPFILRRVKSEVLKQLPPKVEKIEMCPMSEAQQQLYDRLFSRLKNTV
NKEKRELSNVMMQLRKMANHPLLHRQYYTTEKLAAMSRAMLKEPTHFDADPALIQEDMEV
MSDFELHNLCKEYSSISRFQLEKELLLDSGKFSLLTKLLGTFKEKGDRVVLFSQFTMMLD
IVEILLKHLGHQYVRLDGSTPMAERIGLIDKYNTDPEIFVFLLSTRAGGQGINLASANVV
ILHDIDCNPFNDKQAEDRCHRMGQSRSVQVVKLISKDSIEACMLRVGQEKLKLEQDMTTD
EGEEGSMSEDVAELLKASLGL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgttcaaccttgaaaggtttcgttatcagaaggagaagacgacagaacacgtc
ttgccgtcggtcagttcacccaaacaagagcggtacagactggtgaatgactgcagctcg
gagaaggagaattacccggaacgccgagtgaaaccggacggcagacgaggaagaggaaaa
atcccccgccatgcactggaggatgtgtcgtctgatgatgaggcctgtaaaagagcaagg
gtccctacaacgcaagcatcggcaaggaaggccacggtatgtgaaaagcagacaaatctt
gagatggaagataaactgaccaagcttttggaaatgtttcctcagaggagcagaagtgaa
ttgcaggaggtgattgagagtaccagcacactggagggagccatagcatattgcttggtg
gcctacaaagaaaaggattcatctaagacaaaaggcagagcagcacacagtgatgatgct
gagatgcagccaaagaagcgcaggaaaaccgaggagccggatattgaaccagggtctgaa
gaggagacccaaaagccaagcagagaaaagagagatatcttggtgcaaaaactcaaaaag
aagtttccaaaaatggaaaaagtggtactgagagacattctaagagagcatgagtgggat
tttgaaaacgccttgggatcattgctcttgttttcatcagaatcagactctatccctgaa
gagaatgaaaaggtgatgccaaaaccttcaaagagcagccaagtaagcagtggtgatggg
aaggaaaagccaacctcctctaatctggcaagatggttaacaccagtatcaagtaaatct
ccttcaagagcaaagtccccatctaatagttcaacctcaagacaaggcaaaacaagtagc
cgtaagcctgagaaattaaaagctgaaaggttaaaaccagaacacaaggaagaatcggat
aactcagaacctgacagtgaggttgaggatgagtctgatgaatttgacgtggaaggtgag
gataatagctttgattccagggtccaggagcagatattgaacttttttcaggagtcttca
gtggatgaactaagtttgatatctggatgctcattgaaaaaagcccagaagattatttcg
ctgagaccatttaacacatggaaagatgtgaatgagcagttccataaggataatggcttg
tctatggatttggtacatggctgtaagaatgtgctaaaggaaaggcaagtagtgaagcaa
ctcatgaacaagtgtgagagcatagccaagaaaatgaccaaagacattactggggttata
ggcttgggcggaatgaaacagccgaccaccctcaacagcaagttgaaattacagccatac
cagctgataggcttaaagtggcttattctcttacatcagcacaatctcagtggaatcctg
gctgatgaaatgggtctaggaaagacaattcaggcaatttcctttttggcttatctttat
cagaagggcattaagggccctcatctcatcactgtaccctcatcaactgtcgataactgg
gtaagagaactagagctgtggtgtcccagtctgaaggtcattgtttattatggctctgta
gaggaccgcaaataccttcgccatgaaattctcaacaaccaagtagaattcaatgttatc
gtgtctacatataacttaacaataggcaatgaaaatgatcgcagtcttttccgcaaattg
aagttgcagtatgcggtgtttgatgagggccacatgttgaagaacatgaactcgctccgc
taccgccatctcatggccataaatgctgaacagaggttgttgctcactggaacaccttta
caaaacaacttgcttgaactcatatccctgctcaactttattatgccctccatgttctcc
agcagcacttcacagatttccaaaatgttctccacgaaatcatcagaagaggaaagtagt
tttcataaagagagaatcgcgcaagccaagctcatcatgaagccctttattctgagacga
gtcaagagtgaggtactgaaacaactaccgcctaaggtggagaagattgaaatgtgtccc
atgagtgaagctcagcagcagctctatgaccgtctctttagtagactaaagaacactgtt
aataaagagaagcgggagctcagtaatgtgatgatgcagctaagaaagatggccaatcat
cctctgttgcaccggcagtactatacaacagagaagcttgcagccatgagccgagccatg
ctgaaggaaccaacacattttgatgcggaccctgcactgatccaagaagacatggaggtg
atgtccgactttgagctgcataacctttgcaaagaatacagctccatctccaggtttcag
ctggaaaaagagctccttctagattctggaaagttttctttgcttaccaagttattaggc
acattcaaagagaagggtgacagagtagtgctctttagccagttcaccatgatgctggac
attgtggagattttacttaaacaccttggtcaccagtatgttcgactggacggctccaca
cctatggcagaaagaattggactcatagacaaatacaacacagaccctgaaatatttgtc
ttccttctgtcaactcgtgcgggcggccaggggatcaaccttgcctctgctaatgtagtg
attcttcatgatattgactgcaatcctttcaacgataagcaagcagaggaccgctgccat
cgaatggggcagagcaggagtgtgcaggttgtaaaactgattagtaaagattcaatcgag
gcctgcatgctgcgtgtcgggcaggagaaactcaaacttgaacaagacatgactactgat
gagggtgaagagggctccatgtccgaggatgtggctgaactgctgaaagcatcactgggc
ctgtga
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