Clarias gariepinus (North African catfish): 128530528
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Entry
128530528 CDS
T10780
Symbol
rnf220b
Name
(RefSeq) E3 ubiquitin-protein ligase RNF220
KO
K25174
E3 ubiquitin-protein ligase RNF220 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128530528 (rnf220b)
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128530528 (rnf220b)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128530528 (rnf220b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNF220
zf-C3HC4_2
zf-RING_5
zf-RING_2
Pox_A_type_inc
zf-C3HC4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
128530528
NCBI-ProteinID:
XP_053360505
LinkDB
All DBs
Position
9:complement(2169837..2211872)
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AA seq
542 aa
AA seq
DB search
MDLHCTAFKLESSSYVPSSMSSPALMVLASTPESDRDPSVVPCQTSRPFGVPVSLEKDLH
LPFPGGSYTFSSVYQRQAGFTPQNFPASLLHLHPQFTPAPLSMLGHGGVGAFRPFSSTNE
DRDAGIYHSAFLPTKRLKGGPELDTSPRLRYTVSDVKEFEFGVNQLPSGSPGALKGAEDS
GKKRFSVSGLLVDTEASCSPEEQKEGCKLKCVCDVQAPVCPVCHLVLRVDELQEHMEQEM
ERLSQLHLSVSPAQSECLSTGLSRSVFSVHIKREGGSCVSSPRPSDDALHSDRYQTFLRV
RANRHTRLSARVGKAKRRKADEEQRDGVCVVENGSVAAAGDEYEWSEQKRVHMASILSGF
RGVVNSTSKEQQDSDVDLDVDGDDTLRYGRAQYTETDVIPSGGDTEDTETGSKEAVSRLS
PELTRWTTAETPSTSNEDHSRPDISVNVSPGCRSCQFLMPSGDSLNTLEALKSRIRDLEK
QLTRGHRIKCLICMDSYTIPLASIQCWHVHCEECWLRTLGAKKLCPQCNTITSPGDLRRV
YL
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggacctccactgtactgcttttaagttggagagctcctcatacgtgccgagttccatg
tcgtctcctgccctcatggtcctggcgtcgacgcctgagtccgatcgcgacccgtctgtt
gtcccctgccagacctcgcgtccttttggcgttccagtctccctggaaaaagacctacac
ctcccattccctggcggctcctacaccttttcctctgtgtaccagaggcaggctggcttc
acgccccaaaacttccccgcctcgctgctccacctgcacccgcagttcaccccggctcca
ctgagcatgctcggacatggaggagtgggagcgttccggcccttctcttccacaaatgag
gacagagacgcagggatttatcattccgccttcctccccacaaagaggttgaagggaggc
ccggagctggacacgtcgcctcgtctgcgctacaccgtttctgatgtgaaggaatttgag
tttggggtcaaccagctgccctctgggtctcctggtgctctaaaaggagctgaggattct
gggaaaaagaggttcagcgtgtctgggctgctggtggacaccgaggcctcgtgtagcccc
gaggagcaaaaggagggatgtaagctcaagtgtgtgtgtgatgttcaggcgcccgtgtgt
cccgtctgtcacctggtcctgcgagtcgatgagctgcaggagcacatggagcaggagatg
gagagactatcacagctgcacctgagtgtgagtccagcacagagtgaatgtctctcgacc
gggttgtccaggtctgtgttttctgtccacattaagcgagaaggtggttcgtgtgtttcg
tcgccccgcccctctgacgacgccctacactccgacaggtaccagacgtttttacgagtc
cgagccaacagacatacgcggctcagcgctcgcgttgggaaggcgaagagaaggaaagca
gatgaagagcagagagatggagtgtgtgttgtggaaaatggatccgtggcagcagcagga
gacgagtatgaatggagtgaacagaagagagtgcacatggcgtccatcctgtccggattc
agaggtgtagtaaacagcacgtctaaagaacagcaggacagtgacgtggatttggatgtg
gacggagacgatacactgagatatggcagagcacaatacacggagacagacgtgatcccg
agcggaggagacacagaggacacagagacggggtcaaaggaagcagtgagtcgactttcc
ccagaactcaccaggtggaccacagcagaaactccatctacaagtaacgaagaccacagt
agacctgatatcagcgtgaacgtctctccaggctgccggagctgtcagtttttgatgccg
tctggtgattctttaaacaccctggaagcgctgaagtcacggatccgagacctggagaag
cagctgactcgaggacaccggatcaaatgtcttatctgcatggactcgtatacgatcccg
ctggcttccatccagtgttggcacgtgcactgtgaagagtgctggctccgtacactggga
gcgaagaagctgtgtccgcagtgtaacaccatcacttccccaggtgacctgcggcgtgtg
tatttgtga
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