Clarias gariepinus (North African catfish): 128530744
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Entry
128530744 CDS
T10780
Symbol
sort1b
Name
(RefSeq) sortilin 1b
KO
K12388
sortilin
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
128530744 (sort1b)
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
BNR_6
BNR
Motif
Other DBs
NCBI-GeneID:
128530744
NCBI-ProteinID:
XP_053360801
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Position
9:15190345..15209335
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AA seq
818 aa
AA seq
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MGRRSHYILALFFFPAVFCLDFSGTRVSRKTQSLHMDVAGQTSRSAVEVSDYAHMIKKRS
ADDSGNTCNSLQGYNAKLHSNTHSNTFNDLSGSVALAWIGDGTGVVLALTTFQMPIFLLR
FGQSRLYRSEDYGKTFQDVTNLINNTFISTEFGIAIGPENSGKVILTGDVSGSSGSRIFL
STDFGNLFTPLDLPFNPRIQIMYNPENSNVLVAISDKNELWISEDFAVTWKKIYETVCVV
KWGEDNTLFFTTNLNASCSDRGELVLIKSVDNGKTFKTIAEKIYSFGIGGRFLFASIMTG
SGMMRMIHVSTDQGEEWNMAQLPPVGHEQFYSILAANDEMVFMHVDDPGDTGFGTIYVSD
DRGMVYSKSLERHLYTATGGDNDFTNVTSLRGVFMTSVLAEDNSVQTVVTYDQGGEWVPL
KKPENSQCDSTAKDKNKCSLHIHASYSISMKLNVPVLPLTEPNALGLIIAHGSVGDAISV
LTPDVYVSDDGGYTWMRALKGPHHYAILDSGGLLVAVEHNPKVPVSQIKFSTDEGQCWHV
YNFTEEPIYFTGLASEPGAHSMNVSIWGYRDSVLSQYWVSITIDFKELLTRDCADKDYVQ
WLAHSDDISDPEDGCMLGYKERFLRLKKDSVCWNGRDYVVTKQPTPCLCTLDDFLCDFGY
YRKENSSECLEQLELKGHDLEICIHGKKEQLQTNGYRKIPGDKCEGGKNPERKVIDMSTK
CISNLLDPQLQTQEVEQPKHSALIIVVVIAVLLISCVAGVIFVKKYVCGGRFLVHRYSIL
QHSVEANGIEGVDEPLDTNVAGHPKTSFHEDSDEDLLE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgggacgacggtcgcactatattttggcattatttttcttccctgcggtattttgtttg
gatttcagcggaacgagggtgtcgcgtaagacgcagtctcttcacatggatgtagcggga
cagaccagcaggtccgccgtggaggtttcagattatgcgcatatgataaaaaagagaagc
gcagatgacagcgggaacacatgcaatagtctacagggatacaacgccaaattacacagc
aacactcacagtaacacatttaatgatctcagtggatcagtggctctggcctggatagga
gatggaacaggggttgtgttggccttgacaacatttcagatgcccattttcttgctacga
tttggccagtcaagactttacaggagcgaggactatggaaagacattccaggacgtcaca
aatcttattaacaacacatttatcagtactgagtttggaattgccattggccctgagaat
tctggtaaggtgattcttacaggagatgtgtctggaagcagtggatccaggatcttcctg
tccactgactttggaaacctttttactccattggacctgcctttcaaccctcgcatacag
attatgtataaccctgaaaattctaatgtgcttgtggccatcagtgacaagaacgaactc
tggatttcagaggattttgctgtaacatggaagaaaatctacgagactgtgtgtgtggtc
aaatggggagaagacaacacactcttcttcaccaccaacctgaacgcatcctgctctgac
aggggggagcttgtcctgataaaatcagtagacaatggcaaaacatttaagacaatcgct
gaaaagatctactcctttggcattgggggccggttcctcttcgcctccatcatgactgga
tcaggaatgatgcgaatgatccatgtgtcaacagaccagggcgaggaatggaacatggct
cagcttcctcctgtagggcatgaacagttctactctatacttgcagccaacgatgaaatg
gtctttatgcatgtagatgaccccggggacactggttttggaaccatctatgtgtctgac
gataggggcatggtgtactccaaatctttggagcgtcacctttacacggctacaggaggt
gacaacgatttcacaaatgtcacgtcactcagaggagtattcatgaccagtgtgctagct
gaagacaactctgtgcagacagtggtaacgtatgatcagggaggagaatgggtgccctta
aagaaaccagagaacagccaatgtgattccacagctaaagataaaaataagtgtagtctt
catattcatgcttcttacagtatctcaatgaagctgaatgttccagtgctgcctctgact
gagcctaatgctcttggactgataattgctcatggcagtgtaggagatgccatctcagtg
ctgactcccgatgtatatgtatctgatgatggtggctacacatggatgcgtgctctcaag
ggcccccatcactacgccatccttgactcaggaggcctgctagtggctgtggagcacaac
cccaaagtgccagtttctcagatcaaattttctacagatgagggccagtgctggcatgtg
tacaatttcactgaggagccaatctatttcactgggcttgcctcagagccaggggctcac
tccatgaatgttagcatttggggctacagagattctgtgctcagccagtactgggtctcg
atcaccattgatttcaaagagctcctgactcgggactgtgctgataaagactatgtgcag
tggctggcgcattccgatgacatcagtgatcctgaggatggctgcatgctgggttacaag
gagcgttttttgcggctcaagaaagactctgtgtgttggaacggacgtgattatgtcgtc
accaagcagcccacaccttgtctctgcacgctagatgactttctttgtgattttggatat
taccgtaaagagaacagctcagagtgtttggagcagcttgagctcaaaggccatgatctg
gagatctgcatccatggcaagaaggaacaattgcagaccaatgggtatcggaagattcct
ggagacaagtgtgagggtggtaaaaaccctgagcgaaaggtgattgatatgagtacaaag
tgtatcagcaatctactggatccacaattgcagactcaggaagtggagcagccaaaacat
tctgcccttattattgtggtggtgattgctgtcctgctgataagttgtgttgctggggtt
atttttgttaagaagtacgtctgtggtggaagatttctggtgcatagatactccattttg
cagcacagtgtcgaggctaatggcatagagggagtggatgagcctttggatacaaatgtg
gcaggacacccaaagaccagcttccatgaggactcagatgaggacctcctggagtaa
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