KEGG   Clarias gariepinus (North African catfish): 128530932
Entry
128530932         CDS       T10780                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar04382  Cornified envelope formation
cgar04510  Focal adhesion
cgar04512  ECM-receptor interaction
cgar04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128530932 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128530932 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128530932 (col4a6)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    128530932 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cgar04147]
    128530932 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:cgar00536]
    128530932 (col4a6)
Exosome [BR:cgar04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   128530932 (col4a6)
Glycosaminoglycan binding proteins [BR:cgar00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128530932 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 128530932
NCBI-ProteinID: XP_053360965
LinkDB
Position
1:26390190..26469623
AA seq 1685 aa
MKLWFWVFTVVLSLDSTHAGSKTQEPCGGRDCNGRCPCPPIKGGRGQPGPLGPPGPTGSD
GPIGASGPVGPKGERGHGGYAGPSGPKGDKGPGGVPGFPGINGIPGHPGQDGSPGLPGAD
GCNGTQGDPGFPAGLPGRPGSPGLQGLRGVKGQKGEPRFVPTVSVVIGPVGERGYPGPVG
LPGPIGPIGLPGFPGRPGRPGPPGPDGNPGQGYEGEKGEKGDAGQPGLRGAPAALLVSPA
ISTISKGEKGDIGNRGDQGHTGPQGPPGPYGYTGETGEKGIPGLPGLRGPPGFNGPLGED
GQKGYRGNPGLYGLPGHPGPKGYRGDPGPRGETIYIDNQDFFERGPPGDPGFDGPPGLVG
DEGLPGPPGQPGDPGTSSFELGFTGHPGFPGSIGVKGEKGDPGLPSFSPGGLPGNRGPTG
PPGPPGPRGITQRPVFPDNQPGPPGVKGQRGQLGEKGAKGSRGDLGSCNCQGVENSGSEG
PQGFPGSPGFPGLNGRKGEAGDPGPPGHNGPQGPNGRLGEPGFTGYKGEKGNPYYVTGRG
LKGGIGQQGLAGPTGDMGQPGRSGSPGLPGPPGPPGDAGWGVIGDKGFPGAPGRKGYPGA
PGEPGIGYPGMAGVKGFPGDPGFRGPPGQPGPPGPPGDSCGQARLNEASFTKGGQSLPCI
ITGETGERGSWGMTGSKGQKGQPGPPGLSGSPGFDGPKGERGDPGIGGQPGAQGFSGPRG
DPGLPGTTHDGLPGAPGKDGRPGLQGAKGERGEILGAAPGIPGRPGQAGAPGDKGQPGTP
GLSGAVGFDGRSGNPGIKGERGPSGLQGPPGQPGPRGVSLSDIEGPQGPPGNPGFPGPAG
VPGYKGTKGEPGRQGLGRKGSLGRPGMPGLPGQRGRPGDSIPGRNGQLGRPGAKGEKGFP
GLVGFPGSPGRFGGNGQPGGKGQSGTPGFDGNLGLNGPRGVKGDHGEPGPVGPPAPPISL
HQKGDRGAPGATGLPGFPGPRGDKGTPGLPGQPGFPGQPGFADQAKGLPGDPGFQGRPGS
SGFAGPKGSPGVIGFPGMPGPRGDDGIPGLFGSPGTSGLPGNKGEKGDSSGVPGAPGRRG
LVGDSGFPGISGLDGAQGSQGFPGGFGYTGQKGLPGDPGRTGPGGSPGSQGSRGLPGFPG
QRGQDGESGFPGSPGRPGEKGLSGFPGLDGLNGLLGPKGQPGVPGVVEGGQTGAPGLKGL
KGERGSSLPGAPGFPGVKGARGDVGYPGQPGFPGPPGPRGGPSTSADVRGPPGDVGLPGL
DGERGLPGPLGPRGPSGPGTDQGDRGDPGFPGSPGISGKRGDPGFPGGRGPPGNPGFKGQ
RGDPGNRGLPGRPGFPGDQGGYGNKGAKGRMGNVGRKGLPGIVVPPKLDELPTGSPGPQG
DTGPTGYTGTRGRPGFPGRQGPKGKIGSIGKPGRTGPAGPSGPTGDPGFPGYQGPVGTIG
FPGRQGQPGPSGLPGRATGIGYTLVKHSQSTQVPMCPQGMDKLWDGYSLLYVEGQEKAHN
QDLGLAGSCLPRFNTIPFLYCTTNELCYYASRNDKSYWLSTTAPIPMMPVADEQINQYIS
RCSVCEAPSQAVAVHSQDITIPTCPHGWRSLWIGYSFLMHTAAGGEGGGQSLVSPGSCLE
DFRATPFIECNGARGTCFFFNNKHSFWLTTVQQERQFTQSPDSETLKGGQYRGRISRCQV
CMKIL
NT seq 5058 nt   +upstreamnt  +downstreamnt
atgaagctttggttttgggtttttactgttgtcttgtctctggactctacacacgcaggt
tcgaagactcaggaaccatgcggagggcgtgactgtaatggaagatgtccgtgtcctcca
ataaaaggtggcaggggtcagcctgggcctttaggaccacctggtcccactggatctgat
gggcctattggggcctcagggcctgtgggacctaaaggagaaagagggcatggtggttat
gcaggaccatctggacccaagggggacaagggtccaggtggtgttcccggttttccaggt
atcaatggtattcctggtcatccaggccaggacggatcaccgggactgccaggggcagac
ggctgtaatggcacacaaggtgaccctggtttccctgccggcttacctgggagacctggc
agccctggacttcaggggttacgtggtgtcaaaggtcaaaaaggagaaccacgattcgtt
cctactgtctcggttgtcattggtcctgttggtgaacgtggttatcctggtccagttggt
ctcccgggtcccatcggccccatcggtctacctggttttcctgggcgtccaggtcgtcca
ggtccacctgggccagatggaaaccctggtcagggttacgaaggagagaaaggagagaag
ggtgatgcaggtcagccaggactaaggggtgctccagccgctttgttagtctcaccagct
ataagcacaatcagcaaaggagagaagggtgatattggcaatcgtggtgatcaaggacat
acaggaccacaaggacctccaggcccatatggctacacgggtgaaactggagagaagggg
attcctggcttacctggtttaaggggtcctcctggttttaatggaccacttggagaagat
ggccaaaagggatatcgcgggaaccctggtctctatggattaccaggccatccaggccca
aaaggttatagaggagatccaggaccacgaggggaaactatctatattgataaccaagat
ttctttgaacgaggtccaccaggtgatcctggttttgatggccctccaggcctggttgga
gatgaaggtttaccaggacctcctggacagccaggtgaccctggaacatcatcctttgaa
ctaggttttacaggccatcctgggttccctgggtctattggagttaagggagaaaaggga
gacccaggtcttccaagcttcagtcctggtggtttgcctggaaacagaggtccaactgga
cctccaggtccacctggacctcgaggaataactcaaagacctgtgtttcctgacaaccag
cctggaccaccaggtgtaaagggccaaagaggtcaactgggagagaagggtgctaaagga
agcagaggtgaccttggaagttgtaattgccaaggtgtagaaaactctggcagcgagggc
cctcagggatttccagggagtccaggtttcccagggctaaatgggcggaaaggagaagct
ggtgacccaggacctccaggacacaatggtccacagggacccaatggacggcttggagaa
cctggctttactgggtataaaggagagaaaggaaacccttattatgtaacgggacgagga
ctgaagggtggcattggccaacaagggcttgctggtcctacgggtgacatgggtcaaccg
ggaagaagtggatcccctggtttacccggaccaccaggaccacctggagatgctggttgg
ggggtgattggagacaaaggctttcctggagctcctggacggaagggctaccctggggca
cctggtgaaccaggcattggctacccaggcatggctggtgttaaagggtttccaggtgat
cctggtttccgtgggcctccagggcagcctggacctccaggaccaccaggtgacagctgt
gggcaggcgaggcttaatgaagcctctttcacaaagggaggacagtcactgccctgcata
attacgggagaaacaggggagagaggttcatggggaatgactggatctaaaggacaaaaa
ggacagccaggtccaccaggactaagtggatcaccaggttttgatgggccaaaaggtgag
agaggagatccagggatcggaggtcaacccggagcccaaggcttctccgggccaagaggt
gatccaggtttaccaggtacaacacatgatggtcttccaggtgctccaggaaaagatggc
cgtcctgggttgcaaggagcaaaaggagaacgtggtgaaattttaggggctgctccagga
atacccggacgtccaggacaagcaggagcacctggagacaagggccaaccaggcactccc
ggattatcgggtgcagttggttttgatggacgtagtggtaacccaggtataaagggtgag
cgtggtcccagtggcttacaaggacctccagggcagccaggtccacggggtgtgagcctt
tctgatatcgaaggacctcaaggtccacctggtaatcctggattccctggacctgcaggt
gttccaggctacaagggtacaaaaggagaaccaggtcgccaaggcctgggtagaaagggt
tctttagggcgacctggaatgcccggactaccaggacaaaggggacgtcctggagatagt
attccaggacgtaatggccaattaggaaggccaggagcaaaaggggagaagggatttcct
ggattagtgggattccctggatcacccgggcgttttggaggcaatggacaaccagggggt
aaaggacagtctggaaccccgggatttgatggcaaccttggattaaatggcccgcgtggc
gttaaaggggatcatggagaaccaggcccagtagggcctcccgctccacctatttcactt
catcagaaaggggaccgaggtgctcctggagctactggactgcctggttttccaggcccg
agaggtgataagggaaccccaggtttacctggtcaaccaggctttcctggtcagccagga
ttcgctgaccaagctaaaggtctacctggtgatccaggtttccaaggacgcccaggttcc
tcaggatttgcaggacctaaagggtcaccaggggttataggtttcccgggcatgcctgga
cctaggggtgatgatggaattcctggtttgtttggctcacctggcacttcaggattgcct
ggtaacaaaggggagaaaggagactccagtggagtacctggggcccctggacgaagggga
ctcgtgggagattctggattccctggtatctcaggccttgatggtgctcaaggttctcag
ggttttccaggagggtttggatatactgggcagaaaggtctacctggcgatccaggaagg
acagggccaggaggttcacctgggtcccagggcagtagaggtctccctggctttccaggt
cagagaggacaggatggtgaatcgggttttcctggatctccaggtcgaccaggagagaaa
ggtttatctggattccctggtttagatggacttaatggacttttaggacccaaaggtcaa
ccaggcgtacctggtgtagtggagggcggtcagactggagctcctggtttaaaaggttta
aagggagagagaggctcatcattgcccggagcaccaggatttccaggagtaaagggagcc
aggggagatgttggttaccctggacagccaggctttccaggtcctccaggtcctcgtggg
ggaccatccacttctgctgatgtccgtggtcctccaggagatgttggtcttcctggacta
gatggtgaaaggggccttcctggaccccttggtcctcgtggtccgtctgggcctggaaca
gaccagggtgatagaggagatcctggatttcctggatcacctggaatctctgggaaacgt
ggtgatcctggatttccaggaggacgtgggccacctggcaacccaggatttaaaggacag
agaggagaccctggaaaccgtggactaccaggacggccaggatttcctggagatcaggga
ggctatggtaacaaaggagcaaaaggaaggatgggtaatgttggtaggaaaggacttcca
ggaattgttgtcccaccaaagctagatgaattgccaactggcagtcctggtccacaggga
gacactggccccactggctatacaggaacacgaggacgacctggcttccctggacgtcaa
ggccccaaaggaaaaattggatcaataggcaaacctgggcgcactggtccagctggacct
tccgggcccactggagaccctggatttccaggatatcaaggacctgttggtaccataggt
tttcctggtaggcaaggtcagccaggtccttcaggtctgcctggacgtgccactgggatt
ggctacacgctggtgaagcacagccagtccacccaggtgccgatgtgtcctcaaggcatg
gacaagttgtgggatggctacagcttgctttatgtagaaggacaggagaaggctcataat
caagatctgggattggctggttcctgtctacctcgtttcaacactattccctttctttac
tgcacaaccaatgaactatgttactacgccagccgcaatgacaagtcctactggctgtcc
acaacagcacccattcccatgatgcctgtggccgatgagcagatcaatcagtacatcagc
cgttgttcagtgtgcgaagccccatctcaagctgtggctgtccacagccaagatatcact
attccaacctgtccacatgggtggaggagtctgtggattggttactctttcctcatgcac
acggcagcagggggagagggaggtggccagtcccttgtttctcctggatcgtgtttagaa
gacttccgtgcaacaccttttatcgaatgcaacggtgctcggggcacctgcttcttcttc
aataacaaacatagcttctggctaaccactgtgcaacaggagaggcagtttacacaaagt
cctgattcagagaccctgaagggaggtcagtaccgtggccgcatcagccgctgccaagtc
tgcatgaagatcctgtag

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