KEGG   Clarias gariepinus (North African catfish): 128530958
Entry
128530958         CDS       T10780                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar04382  Cornified envelope formation
cgar04510  Focal adhesion
cgar04512  ECM-receptor interaction
cgar04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128530958 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128530958 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128530958 (col4a5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    128530958 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cgar04147]
    128530958 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:cgar00536]
    128530958 (col4a5)
Exosome [BR:cgar04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   128530958 (col4a5)
Glycosaminoglycan binding proteins [BR:cgar00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128530958 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 128530958
NCBI-ProteinID: XP_053360968
LinkDB
Position
1:complement(26340187..26389113)
AA seq 1678 aa
MNKKLKSLQNLVAVLLFISLSIGVQRSESAACHGCGTGPKCDCSGVKGAKGDRGFPGQTG
HPGLPGFPGPEGPIGSRGEKGDDGPSGPAGPKGIRGPPGLPGFAGTPGIPGLPGMDGPPG
PKGIPGCNGTKGERGLPGSPGFPGLDGNPGLRGDPGQKGEPGDVIPLETSGTPGGPGSIG
PPGPRGDPGTPGLPGPIGPQGPRGYDGLPGPPGPPGPKGNMGLNFQGPKGEKGETGLQGP
PGPPGQVDQLTAEDTTVIHRGEKGDPGPPGPPGLAGPTGPPGPEGGPKGEKGEPGDPGKR
GKPGKDGDPGPPGIPGVIGDPGEAGFPGSAGERGEKGERGLPGPPGVVIPSQNLIGPKGD
LGPPGAPGRKGEQGLTGVQGPPGPQGRPGIGGQGPPGPPGYPGERGQKGDHGSPGASLPG
SPGRPGLQGLQGPPGPPGPPGFSNGGENCLPGPAGLPGLNGEPGYPGETGQKGEKGDTCV
NCITNGNLIPGPRGPPGPPGPSGSAGVPGFKGDRGFPGSPGLMGPPGLQGLQGIPGIPGE
KGEPGEAIPFDGMKGDKGDPGFPGPPGLPGRDGTPGRNGVPGPPGPKGAPGSSTINGERG
PPGEPGSPGPPGDRGITGAPGFGQQGPPGEKGFQGVSGSIGLPGPPGQKGEPGHTISDRG
PPGPPGNKGDPGPQGSPGDSGQPGSPGFPGLPGQKGEPGLSGIGLPGPPGPKGFPGTAGI
PGNPGRPGSPGVDGQPGRPGARGPKGEPGYGIPGPQGPPGLPGSKGFTGAKGDPGFPGNP
GAPGRPGIDGPPGFKGDTGLPGPAGSPGSQGLPGFGLPGSPGPQGPPGPMGNPGIPGFNG
EKGDPGSPGLDIPGIPGDSGNPGLPGQLGPPGPPGNPGTPGQDGLPGFPGQKGEMGVMGA
PGPAGNPGNPGAPGFPGPKGDSGQPGRPGETGLKGEKGYKGEQGLRGPAGIQEVVKGLKG
EPGPQGTSGSPGSKGIRGLAGDPGNPGQDGLPGPPGPSGPKGDPGLPGTPGLSGAPGPKG
SMGEMGFPGPSGVKGSPGQPGRTGQPGSPGAPGFPGVKGDPGTPGFGLPGATGPKGEPGS
PGVPGAAGLKGQQGPPGIPGIPGSPGPKGDPGLPGFQGAPGATGPKGLDGVPGASGLAGA
PGRPGTSGPPGLPGAPGDKGQAGRDGIPGPAGLKGEPGRPGHGLPGAPGIPGMPGPKGDP
GFPGPSGSPGFPGAKGDIGFPGAQGSPGLQGPAGPPGQPLQGPKGLQGPPGPPGRLGPPG
PEGPRGPPGSGGVKGEKGFPGNPGLAGFPGQKGDTGSPGLIGPPGPVGAVGLNGDIGPPG
APGLPGTKGQSGIPGNPGQTGDRGDPGPPGPPGNPGQAPSPIVVKGDQGPPGLPGPPGSR
GLPGQAGSDGISGPAGDPGDPGPDGPPGFSGPAGRKGESGPSGQPGQRGLPGPPGPDGIP
GPPGPAGVSSAAHGFLITRHSQNTDVPQCPFGTSLIYEGYSLLYVQGNERAHGQDLGTAG
SCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIKGDAIKPFISRCSVC
EAPAMVIAVHSQTIQVPSCPQYWEVLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRTS
PFIECHGHGTCNYYANSYSFWLASVEKSEMFRKPQSETLKAGNLLTRVSRCIVCMKRT
NT seq 5037 nt   +upstreamnt  +downstreamnt
atgaataaaaagttaaagagcctgcagaacctggtcgcggtgctactcttcatatctctg
tccataggggttcagcggtctgagtcggcggcatgtcatggctgtgggactggcccgaag
tgtgactgcagtggtgtaaaaggagcgaagggtgatagaggtttcccaggtcagacgggt
catccaggtttaccagggtttcccggaccagaagggccgattggatctcgtggagaaaag
ggtgatgatggaccttcaggaccagctggacctaaaggaataagaggacctcctggactt
cctggatttgcagggacaccaggaattccaggtcttccgggaatggatgggcctccaggt
ccaaaaggaattcctggatgtaacggaacaaagggtgaaagaggattaccaggaagtcca
ggtttcccaggtttagatggtaatccaggactacgtggtgatcccggacagaagggagag
cctggtgatgtcatccctttagaaacatcaggaacaccaggaggaccaggaagcatcggt
cccccaggccccagaggggatccagggacacccggattgccaggtcctattggtcctcag
ggtccgagaggttatgatgggcttccaggtccccctggtccacctgggccgaagggaaat
atggggctgaattttcaaggtccaaaaggagagaagggtgaaacaggcttgcagggacct
cctgggcctccagggcaagtcgaccaacttacagctgaagataccacagtgattcatcga
ggagagaagggagacccagggccacctggaccacctggacttgcgggccccactggacca
cctggcccagagggtggtccgaagggtgagaagggagaaccaggagatcctggaaagagg
ggtaaacctggtaaagatggggaccctggcccacctggaattccgggtgttataggagac
ccaggtgaagctggttttccaggaagtgctggagaaagaggtgagaagggtgagcgagga
cttcctggaccgccaggcgtggtgattccatcccagaacctaataggacctaaaggagat
cttgggcctcctggagctcctggaagaaaaggagagcaaggattaactggtgtccaaggc
ccaccaggtccacaaggtcgtccaggaatcggaggtcaaggcccacctggcccccctggt
tatccaggagagagaggacagaagggagatcatggatcgcctggggcttctcttccaggt
tctcctggcagacccggactgcaaggtttacaaggaccaccgggacctccaggacctcct
ggattttccaatggtggtgaaaattgcctcccaggtcctgctggtcttccaggcctaaat
ggggaacctggttacccaggagagactggccaaaaaggagaaaagggggacacatgtgta
aattgtataacaaatggcaatcttatcccaggaccacggggtccacctgggcccccagga
ccctcaggtagtgctggtgtccctggttttaaaggagacagaggattcccaggcagccct
ggtctcatggggcccccaggtttacaaggactacaaggtatacctggaatacctggagag
aagggggagcctggtgaagcaattccctttgatggtatgaagggggacaagggagaccca
ggattccctggtcctccaggtctgcctggccgtgatgggacgcctggtcgaaatggggtt
cctggaccacctggtcccaaaggcgcacctggttcttcaacaattaatggtgaacgtggc
cctcctggagaacctggatccccaggtcctcctggagacaggggcatcactggtgcccct
ggatttggccagcagggacctcctggagagaaaggattccagggtgtgtcaggaagtata
ggacttccaggaccaccaggtcagaaaggtgaaccaggtcacactatatctgatagaggg
ccacctggaccccctggaaataaaggagaccctggtccccaaggaagtccaggtgactca
ggccaacctggctcccctggcttcccaggattacctggccaaaaaggagaacctggtctc
tcgggtataggcttgccaggcccaccaggtcctaaaggattcccaggtactgcaggaatt
cctggcaaccctggcagacctggatctcctggtgttgatggacaacctggtagacctgga
gctcgaggacctaagggtgaacccggttatgggatccctgggcctcaaggccccccaggt
ttgcctggtagtaagggtttcaccggggctaaaggtgatcctgggttccctggaaatcca
ggcgcaccaggacgacccggtattgatggtcctcctggcttcaaaggtgatactggtcta
cctgggcctgcgggttcacctggctctcaaggtcttcctggttttggcttacctggttca
cctggacctcaaggaccccccggacctatgggaaatcctggtattcccggttttaatggt
gagaaaggagaccctggttcccctggactggatattccaggtattcctggtgactctggt
aaccccggattgcctggacaacttggtcctcctggccctcctgggaaccctggaacccct
ggccaagatggattacctggattccctgggcaaaaaggagaaatgggtgtaatgggtgct
ccaggacctgctgggaatccaggcaaccctggtgctccaggatttcctggaccaaaaggt
gatagtggtcagccaggacgtccaggagaaacaggtttaaaaggagaaaaaggatataaa
ggtgaacaaggtttaagaggcccagctggtatccaggaggttgtaaaaggattaaaggga
gaaccaggacctcaaggaactagtggatctcctggatcgaaaggtattcgtggccttgca
ggagatccaggtaaccctggacaggatggactccctgggccacctggaccctcaggtccc
aagggagatcctggacttccaggaacaccaggactctctggtgctccaggcccgaaaggc
agcatgggcgaaatgggattccctggaccttctggtgttaaaggaagcccaggtcaacct
gggcgaactggacagcctggatctcctggagcaccagggttccctggagtgaaaggagac
cctggaacaccaggatttgggctaccaggtgctacaggaccgaagggtgaacctgggtct
cctggtgtccctggagctgcagggctaaaaggtcaacaagggcccccaggaattccaggc
atacctggaagccctggcccaaaaggggatcctggcctcccaggattccaaggtgcacct
ggtgctactggtcctaagggtctggatggagtcccaggtgcctcaggtctagcaggagca
cctggaaggccaggaacctctggcccacccggtttgccaggcgcgcctggagacaaaggt
caagctggacgtgatggtattcctggaccagcaggattgaaaggagagccaggtagacca
ggtcatggacttccgggtgctccaggaattcctgggatgccaggtcccaaaggagaccct
ggctttcctggcccatctggcagccctggtttccctggggcaaagggtgatataggattc
cctggtgcacaaggcagccctggtcttcaggggcccgcaggtcctcctggtcagcctctc
caaggacctaaaggactccagggacctcctggaccaccaggaagactaggtcctcctggc
ccagaggggccccgtggtccaccaggttctggaggagtgaagggtgagaaaggctttcct
ggtaaccctggattagctggttttcctggacagaagggagacactgggtcaccaggttta
attggccctcctggacctgttggagctgtcggacttaatggagatatcggccctccgggc
gcaccgggattaccaggaactaaaggtcagtcgggtattcctgggaatcctggtcagact
ggtgatcgcggtgaccctggtcctccaggtcctcctggcaacccaggtcaagcgccatcc
ccaatcgtggtaaagggtgatcaggggcctccaggtcttccaggacccccaggatcccga
gggctaccaggacaggcaggatcagatgggatttcaggtccagctggtgatcctggtgac
ccaggtcctgatggacctccaggatttagtggtccagctggaaggaaaggagaatctgga
ccatctgggcagccgggtcagcggggtttacccggccctcctggtccagacgggattcca
ggtcctcctggtcctgcaggcgtgtcgtcagcggctcatggcttcctgattacacgacac
agtcagaatacagatgtacctcaatgcccatttggaacctctctcatctacgaaggttat
tctctgctttatgtgcagggcaacgagagggcacatggccaggacctgggtacggctgga
agttgtcttcgtcgtttcagcaccatgccttttatgttctgcaacattaacaacgtgtgc
aacttcgcctcccggaatgactactcctattggttgtctactcctgaacccatgcccatg
agcatggctcctatcaagggagatgccatcaagccctttatcagcagatgttctgtatgt
gaagctccagctatggtgatagccgtgcacagccagaccatccaagtgccatcatgtcca
cagtactgggaggtgctgtggattggctattctttcatgatgcacactagtgcaggtgca
gagggctccggtcaggctctagcctcgcctggctcctgtctggaggagttccgaacatct
cccttcatcgagtgccacggtcacggaacctgcaactactacgccaactcctatagcttc
tggctggcctccgttgaaaagtctgaaatgttcaggaagccacagtctgagacgctgaaa
gcaggcaatctcctgacacgcgtgagccgctgcatcgtgtgtatgaagaggacgtaa

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