Clarias gariepinus (North African catfish): 128530958
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Entry
128530958 CDS
T10780
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
cgar04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
cgar04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128530958 (col4a5)
Glycosaminoglycan binding proteins [BR:
cgar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128530958 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128530958
NCBI-ProteinID:
XP_053360968
LinkDB
All DBs
Position
1:complement(26340187..26389113)
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AA seq
1678 aa
AA seq
DB search
MNKKLKSLQNLVAVLLFISLSIGVQRSESAACHGCGTGPKCDCSGVKGAKGDRGFPGQTG
HPGLPGFPGPEGPIGSRGEKGDDGPSGPAGPKGIRGPPGLPGFAGTPGIPGLPGMDGPPG
PKGIPGCNGTKGERGLPGSPGFPGLDGNPGLRGDPGQKGEPGDVIPLETSGTPGGPGSIG
PPGPRGDPGTPGLPGPIGPQGPRGYDGLPGPPGPPGPKGNMGLNFQGPKGEKGETGLQGP
PGPPGQVDQLTAEDTTVIHRGEKGDPGPPGPPGLAGPTGPPGPEGGPKGEKGEPGDPGKR
GKPGKDGDPGPPGIPGVIGDPGEAGFPGSAGERGEKGERGLPGPPGVVIPSQNLIGPKGD
LGPPGAPGRKGEQGLTGVQGPPGPQGRPGIGGQGPPGPPGYPGERGQKGDHGSPGASLPG
SPGRPGLQGLQGPPGPPGPPGFSNGGENCLPGPAGLPGLNGEPGYPGETGQKGEKGDTCV
NCITNGNLIPGPRGPPGPPGPSGSAGVPGFKGDRGFPGSPGLMGPPGLQGLQGIPGIPGE
KGEPGEAIPFDGMKGDKGDPGFPGPPGLPGRDGTPGRNGVPGPPGPKGAPGSSTINGERG
PPGEPGSPGPPGDRGITGAPGFGQQGPPGEKGFQGVSGSIGLPGPPGQKGEPGHTISDRG
PPGPPGNKGDPGPQGSPGDSGQPGSPGFPGLPGQKGEPGLSGIGLPGPPGPKGFPGTAGI
PGNPGRPGSPGVDGQPGRPGARGPKGEPGYGIPGPQGPPGLPGSKGFTGAKGDPGFPGNP
GAPGRPGIDGPPGFKGDTGLPGPAGSPGSQGLPGFGLPGSPGPQGPPGPMGNPGIPGFNG
EKGDPGSPGLDIPGIPGDSGNPGLPGQLGPPGPPGNPGTPGQDGLPGFPGQKGEMGVMGA
PGPAGNPGNPGAPGFPGPKGDSGQPGRPGETGLKGEKGYKGEQGLRGPAGIQEVVKGLKG
EPGPQGTSGSPGSKGIRGLAGDPGNPGQDGLPGPPGPSGPKGDPGLPGTPGLSGAPGPKG
SMGEMGFPGPSGVKGSPGQPGRTGQPGSPGAPGFPGVKGDPGTPGFGLPGATGPKGEPGS
PGVPGAAGLKGQQGPPGIPGIPGSPGPKGDPGLPGFQGAPGATGPKGLDGVPGASGLAGA
PGRPGTSGPPGLPGAPGDKGQAGRDGIPGPAGLKGEPGRPGHGLPGAPGIPGMPGPKGDP
GFPGPSGSPGFPGAKGDIGFPGAQGSPGLQGPAGPPGQPLQGPKGLQGPPGPPGRLGPPG
PEGPRGPPGSGGVKGEKGFPGNPGLAGFPGQKGDTGSPGLIGPPGPVGAVGLNGDIGPPG
APGLPGTKGQSGIPGNPGQTGDRGDPGPPGPPGNPGQAPSPIVVKGDQGPPGLPGPPGSR
GLPGQAGSDGISGPAGDPGDPGPDGPPGFSGPAGRKGESGPSGQPGQRGLPGPPGPDGIP
GPPGPAGVSSAAHGFLITRHSQNTDVPQCPFGTSLIYEGYSLLYVQGNERAHGQDLGTAG
SCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIKGDAIKPFISRCSVC
EAPAMVIAVHSQTIQVPSCPQYWEVLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRTS
PFIECHGHGTCNYYANSYSFWLASVEKSEMFRKPQSETLKAGNLLTRVSRCIVCMKRT
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagttaaagagcctgcagaacctggtcgcggtgctactcttcatatctctg
tccataggggttcagcggtctgagtcggcggcatgtcatggctgtgggactggcccgaag
tgtgactgcagtggtgtaaaaggagcgaagggtgatagaggtttcccaggtcagacgggt
catccaggtttaccagggtttcccggaccagaagggccgattggatctcgtggagaaaag
ggtgatgatggaccttcaggaccagctggacctaaaggaataagaggacctcctggactt
cctggatttgcagggacaccaggaattccaggtcttccgggaatggatgggcctccaggt
ccaaaaggaattcctggatgtaacggaacaaagggtgaaagaggattaccaggaagtcca
ggtttcccaggtttagatggtaatccaggactacgtggtgatcccggacagaagggagag
cctggtgatgtcatccctttagaaacatcaggaacaccaggaggaccaggaagcatcggt
cccccaggccccagaggggatccagggacacccggattgccaggtcctattggtcctcag
ggtccgagaggttatgatgggcttccaggtccccctggtccacctgggccgaagggaaat
atggggctgaattttcaaggtccaaaaggagagaagggtgaaacaggcttgcagggacct
cctgggcctccagggcaagtcgaccaacttacagctgaagataccacagtgattcatcga
ggagagaagggagacccagggccacctggaccacctggacttgcgggccccactggacca
cctggcccagagggtggtccgaagggtgagaagggagaaccaggagatcctggaaagagg
ggtaaacctggtaaagatggggaccctggcccacctggaattccgggtgttataggagac
ccaggtgaagctggttttccaggaagtgctggagaaagaggtgagaagggtgagcgagga
cttcctggaccgccaggcgtggtgattccatcccagaacctaataggacctaaaggagat
cttgggcctcctggagctcctggaagaaaaggagagcaaggattaactggtgtccaaggc
ccaccaggtccacaaggtcgtccaggaatcggaggtcaaggcccacctggcccccctggt
tatccaggagagagaggacagaagggagatcatggatcgcctggggcttctcttccaggt
tctcctggcagacccggactgcaaggtttacaaggaccaccgggacctccaggacctcct
ggattttccaatggtggtgaaaattgcctcccaggtcctgctggtcttccaggcctaaat
ggggaacctggttacccaggagagactggccaaaaaggagaaaagggggacacatgtgta
aattgtataacaaatggcaatcttatcccaggaccacggggtccacctgggcccccagga
ccctcaggtagtgctggtgtccctggttttaaaggagacagaggattcccaggcagccct
ggtctcatggggcccccaggtttacaaggactacaaggtatacctggaatacctggagag
aagggggagcctggtgaagcaattccctttgatggtatgaagggggacaagggagaccca
ggattccctggtcctccaggtctgcctggccgtgatgggacgcctggtcgaaatggggtt
cctggaccacctggtcccaaaggcgcacctggttcttcaacaattaatggtgaacgtggc
cctcctggagaacctggatccccaggtcctcctggagacaggggcatcactggtgcccct
ggatttggccagcagggacctcctggagagaaaggattccagggtgtgtcaggaagtata
ggacttccaggaccaccaggtcagaaaggtgaaccaggtcacactatatctgatagaggg
ccacctggaccccctggaaataaaggagaccctggtccccaaggaagtccaggtgactca
ggccaacctggctcccctggcttcccaggattacctggccaaaaaggagaacctggtctc
tcgggtataggcttgccaggcccaccaggtcctaaaggattcccaggtactgcaggaatt
cctggcaaccctggcagacctggatctcctggtgttgatggacaacctggtagacctgga
gctcgaggacctaagggtgaacccggttatgggatccctgggcctcaaggccccccaggt
ttgcctggtagtaagggtttcaccggggctaaaggtgatcctgggttccctggaaatcca
ggcgcaccaggacgacccggtattgatggtcctcctggcttcaaaggtgatactggtcta
cctgggcctgcgggttcacctggctctcaaggtcttcctggttttggcttacctggttca
cctggacctcaaggaccccccggacctatgggaaatcctggtattcccggttttaatggt
gagaaaggagaccctggttcccctggactggatattccaggtattcctggtgactctggt
aaccccggattgcctggacaacttggtcctcctggccctcctgggaaccctggaacccct
ggccaagatggattacctggattccctgggcaaaaaggagaaatgggtgtaatgggtgct
ccaggacctgctgggaatccaggcaaccctggtgctccaggatttcctggaccaaaaggt
gatagtggtcagccaggacgtccaggagaaacaggtttaaaaggagaaaaaggatataaa
ggtgaacaaggtttaagaggcccagctggtatccaggaggttgtaaaaggattaaaggga
gaaccaggacctcaaggaactagtggatctcctggatcgaaaggtattcgtggccttgca
ggagatccaggtaaccctggacaggatggactccctgggccacctggaccctcaggtccc
aagggagatcctggacttccaggaacaccaggactctctggtgctccaggcccgaaaggc
agcatgggcgaaatgggattccctggaccttctggtgttaaaggaagcccaggtcaacct
gggcgaactggacagcctggatctcctggagcaccagggttccctggagtgaaaggagac
cctggaacaccaggatttgggctaccaggtgctacaggaccgaagggtgaacctgggtct
cctggtgtccctggagctgcagggctaaaaggtcaacaagggcccccaggaattccaggc
atacctggaagccctggcccaaaaggggatcctggcctcccaggattccaaggtgcacct
ggtgctactggtcctaagggtctggatggagtcccaggtgcctcaggtctagcaggagca
cctggaaggccaggaacctctggcccacccggtttgccaggcgcgcctggagacaaaggt
caagctggacgtgatggtattcctggaccagcaggattgaaaggagagccaggtagacca
ggtcatggacttccgggtgctccaggaattcctgggatgccaggtcccaaaggagaccct
ggctttcctggcccatctggcagccctggtttccctggggcaaagggtgatataggattc
cctggtgcacaaggcagccctggtcttcaggggcccgcaggtcctcctggtcagcctctc
caaggacctaaaggactccagggacctcctggaccaccaggaagactaggtcctcctggc
ccagaggggccccgtggtccaccaggttctggaggagtgaagggtgagaaaggctttcct
ggtaaccctggattagctggttttcctggacagaagggagacactgggtcaccaggttta
attggccctcctggacctgttggagctgtcggacttaatggagatatcggccctccgggc
gcaccgggattaccaggaactaaaggtcagtcgggtattcctgggaatcctggtcagact
ggtgatcgcggtgaccctggtcctccaggtcctcctggcaacccaggtcaagcgccatcc
ccaatcgtggtaaagggtgatcaggggcctccaggtcttccaggacccccaggatcccga
gggctaccaggacaggcaggatcagatgggatttcaggtccagctggtgatcctggtgac
ccaggtcctgatggacctccaggatttagtggtccagctggaaggaaaggagaatctgga
ccatctgggcagccgggtcagcggggtttacccggccctcctggtccagacgggattcca
ggtcctcctggtcctgcaggcgtgtcgtcagcggctcatggcttcctgattacacgacac
agtcagaatacagatgtacctcaatgcccatttggaacctctctcatctacgaaggttat
tctctgctttatgtgcagggcaacgagagggcacatggccaggacctgggtacggctgga
agttgtcttcgtcgtttcagcaccatgccttttatgttctgcaacattaacaacgtgtgc
aacttcgcctcccggaatgactactcctattggttgtctactcctgaacccatgcccatg
agcatggctcctatcaagggagatgccatcaagccctttatcagcagatgttctgtatgt
gaagctccagctatggtgatagccgtgcacagccagaccatccaagtgccatcatgtcca
cagtactgggaggtgctgtggattggctattctttcatgatgcacactagtgcaggtgca
gagggctccggtcaggctctagcctcgcctggctcctgtctggaggagttccgaacatct
cccttcatcgagtgccacggtcacggaacctgcaactactacgccaactcctatagcttc
tggctggcctccgttgaaaagtctgaaatgttcaggaagccacagtctgagacgctgaaa
gcaggcaatctcctgacacgcgtgagccgctgcatcgtgtgtatgaagaggacgtaa
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integrated database retrieval system
