Clarias gariepinus (North African catfish): 128531299
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Entry
128531299 CDS
T10780
Name
(RefSeq) E3 ubiquitin-protein ligase Hakai isoform X1
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128531299
04131 Membrane trafficking [BR:
cgar04131
]
128531299
04121 Ubiquitin system [BR:
cgar04121
]
128531299
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128531299
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
128531299
Membrane trafficking [BR:
cgar04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
128531299
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128531299
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_Hakai
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
AraC_N
zf-RING_2
DUF4187
Motif
Other DBs
NCBI-GeneID:
128531299
NCBI-ProteinID:
XP_053361069
LinkDB
All DBs
Position
10
Genome browser
AA seq
473 aa
AA seq
DB search
MDQNVDNDLQGTDGSGALGGPDVRRRIPIKLLSKQTLRSKPPARPQRPTTRLPSSGQNDE
ETFTCKQEERFECKSGDAYGKQRRFPHPFFWDFKLNLVGEKDDTPVHFCDKCGLPIKIYG
RMIPCKHVFCYDCAVLYEKKSDKTCPGLSLYSCTEPVQRIEQCQRGSLYMCSIVQGCKRT
YLSQRDLQAHINHRHIRAGKPGASRAEPTHPTPAPTPTLTSEPPDRFRLPPPPHLPKSHP
LIPPPLQGHDPYGQPPPASPSPSDLGPSSRALPPETFRIATVTTRKHSNLITVPIQDDSG
TSIPSPREPIPQTPPGLPPHHHPGQVVAHPHHIMPPPQQQHYGPPPPPPPLGHPMQATGA
PHMVYNQAPPMSTAPPPITPPPGHIINQMPPFLNHPLSAALPQHGAPPVNAPPPHHFNTL
PQDQGTLSPPFNQPGALSPGLWPAPRVPRIQGPPQGQMPGHHPEQARYRPYYQ
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaaatgtagacaatgaccttcaaggaactgatggttcaggggctttgggaggg
cctgatgttcgcagacggatacccatcaagttactgtccaaacagactctcagaagcaag
ccccctgcccggcctcagcggcccaccacgagactgccctccagtggacaaaatgatgaa
gaaacatttacctgtaagcaggaggagaggtttgagtgcaaatctggagatgcttatggg
aaacagcggagattcccccacccatttttctgggactttaagctgaacttggtcggagag
aaagatgacactccagtgcacttctgtgataaatgtggcctgcccataaagatatatgga
cgaatgattccctgtaagcacgtattctgctatgactgtgcggttctctacgagaagaaa
agtgataagacctgtccaggtttgtccctatatagctgcaccgagccagtccagcgcatc
gaacagtgccaacgtggatccctctacatgtgcagcattgtgcagggttgcaagcgcacc
tacctctctcagcgggacctgcaggcccacatcaaccaccggcacattagagcgggcaaa
cctggagcctcgcgggccgagccaactcacccaaccccagctccgactccgaccttaacc
tcagaaccacctgaccgtttccgcctgcccccaccccctcacctgcccaagtcccacccc
ctgatcccaccgccgctgcagggtcatgacccctatgggcaaccaccccccgcatcacct
tctccctctgacctaggtccgtcatcccgagccttgccaccggagacatttcgcatagcc
actgtgaccacacgcaaacacagcaacctcatcaccgtgcccatccaggatgactcgggc
acctccattccctctccacgtgaacccatcccacagactcccccaggtctaccccctcat
caccacccaggacaggtggtggcccaccctcaccacatcatgcctccacctcagcagcaa
cattacgggcctccaccaccaccacccccacttggccaccccatgcaggccacaggggct
ccccatatggtctacaaccaggcacctccaatgtccactgcgccacctcccatcacccct
ccgcctggacatattataaaccagatgcccccgtttctgaaccacccgctgtctgctgct
cttcctcagcacggtgcccctcctgttaatgcccctccacctcatcactttaacactctg
ccccaggaccagggcaccttgagcccgccctttaaccaacctggcgccctgagcccaggt
ttgtggcccgcaccacgtgtccctcgcattcaggggccccctcagggccagatgcctgga
caccacccagaacaggctcgatatagaccatactaccaatag
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