KEGG   Clarias gariepinus (North African catfish): 128531550
Entry
128531550         CDS       T10780                                 
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar03040  Spliceosome
cgar04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128531550 (prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    128531550 (prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cgar03041]
    128531550 (prpf19)
   04121 Ubiquitin system [BR:cgar04121]
    128531550 (prpf19)
   03400 DNA repair and recombination proteins [BR:cgar03400]
    128531550 (prpf19)
Enzymes [BR:cgar01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     128531550 (prpf19)
Spliceosome [BR:cgar03041]
 Complex B
  Other components
   Prp19 complex
    128531550 (prpf19)
 Complex C
   Prp19-CDC5 complex
    128531550 (prpf19)
Ubiquitin system [BR:cgar04121]
 Ubiquitin ligases (E3)
  U-box type E3
   128531550 (prpf19)
DNA repair and recombination proteins [BR:cgar03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    128531550 (prpf19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Prp19 Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_TEP1_C PEP5_VPS11_N Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_Nup120_160 WD40_RFWD3 U-box Beta-prop_SPT8 Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N PROPPIN Beta-prop_DCAF12 Cytochrom_D1 Tricorn_2nd zf-Nse Cep57_MT_bd ATG16
Other DBs
NCBI-GeneID: 128531550
NCBI-ProteinID: XP_053361454
LinkDB
Position
10:complement(10682871..10689109)
AA seq 505 aa
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPINGQPLSEEQLIDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQVAPASQPAAVGAGGEPMEVSEQVGMTPEIIQKLQDK
ATVLTTERKKRGKTMPEELVRAEDLSKYRQVATHAGLHSASIPGILALDLCPTDTNKVLT
GGADKNVVVFDRREEQIVATLKGHTKKVTSVIYHPSQSLVFSASPDSTIRVWSLAAGNCV
QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDETAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTAIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHSGLVT
GVAFGEHAQFLSSTGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtctttggtttgtgcaatctcgaatgaggtaccggagcacccgtgtgtctctccggtc
tccaaccaggtgtttgagcgccgccttatagagaaatacattgcagagaatggagccgat
ccgattaacgggcagcctctatctgaggagcagctcatcgacattaaggtctctcatcca
attcgaccgaaggcaccatctgccaccagcattcctgctattctgaagtcacttcaagat
gagtgggatgcagtaatgttgcacagtttcacactgcgccagcagttgcagacaacacgc
caggagctgtcacacgcactctaccaacacgatgccgcctgcagggtcatcgctcgtctc
actaaagaggtcaccgctgccagagaagctttggccacactcaaaccccaagctgggttg
gttgctcctcaggttgctcctgcctcccagcctgcagccgtgggtgcgggtggcgagccc
atggaggtcagcgaacaggtcggaatgactccagagatcatccagaagctgcaagacaag
gccactgtcctgaccaccgaaagaaagaagaggggaaagaccatgccagaggagctggtc
agagccgaggatctcagcaagtatcgccaagtggccacgcatgctggtctacacagtgcc
agtattcctggaatccttgctctggatttgtgtcccacagataccaacaaagtgctcaca
ggtggtgcggataagaatgtggtggtgtttgaccgcagagaggagcaaatcgtggctact
cttaaaggccacaccaaaaaggtcacctctgtcatctaccacccatctcagtcgctggtg
ttttcggcgtccccggacagcaccatccgtgtgtggtcactcgcagcaggaaattgtgtg
caggtggttagagctcatgaggcaggagttaccggcctctccctgcatgctactggagat
tatctgctcagttcctctgaggatcagtactgggctttctctgatatccaaactggtcgt
gttcttaccaaagtcactgatgagacagcaggatgtgcgctgacctgtgctcagttccac
cctgacggtttgattttcggcactggtacggcagactcgcagattaagatttgggatctg
aaggagcgcaccaatgtggccaactttcccggtcactctggcccagtcaccgccatcgcc
ttctccgagaatggatactaccttgctactggtgctcaggatagctcactgaagctgtgg
gatctgaggaagctgaaaaactttaagaccattactttggataataactatgaggtgaag
tctctggtgtttgatcagagtggaacatatttggctgttggagggtctgatattcgagtc
tacatttgcaaacagtggtctgaggttctcaatttcactgatcactcaggcttggtgacg
ggtgtggcctttggtgaacatgctcagttcctgtcctctaccggcatggacagaagcctc
aagttctacagcctgtaa

DBGET integrated database retrieval system