Clarias gariepinus (North African catfish): 128531668
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Entry
128531668 CDS
T10780
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128531668 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128531668 (cnot4a)
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128531668 (cnot4a)
04121 Ubiquitin system [BR:
cgar04121
]
128531668 (cnot4a)
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128531668 (cnot4a)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
128531668 (cnot4a)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128531668 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128531668 (cnot4a)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128531668 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
DZR_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
128531668
NCBI-ProteinID:
XP_053361703
LinkDB
All DBs
Position
10:27145112..27162257
Genome browser
AA seq
766 aa
AA seq
DB search
MSRSPELKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEILRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKANPNFLQTSTCGGEKSKNKANATQRQNSGGKEGWPLLQGYGKLVNGLPTEYRKS
PPLLDCLTDSDHMTPEDPDTELGTDQNTGLSHFAPVLEPTSPVDKPTEPAIIGNGENIAQ
VPSSDSPSPPPGFSKPSLAVPISVAELTARSPFEGAPAESQSLFSDNSNFRHPNPIPSSL
PSFPSSPQGGSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSAKQQQQQEDDLGFDP
FDVTRKALADLIEKELSVQEASPRSPSLLPNGQPRLPPLQHRGLYNSFSLPTHGHATPGR
QPWMGLPTRNNLAHLNHITHSHFLDPNCPPQHHSTGLGGITISENSGSVENINVKEWQDG
LRALLPNININFGGIPNSTSSSSSSSSSSSSMNHMGVPTGSVGLSHSLSWDGVTSWMDPA
IITGMPSSTGNSLDCVQDENPPHWLKSLQALTEMDGPSGSVVSQPRHSGLDSTVRLPLHR
GGWAPYLPPPSLTPSHFHSPPPGFQTAFRPPAQTTDLLQSAAMERH
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtagccctgaactgaaggaagaccccatggagtgccctctgtgtatggagcct
ttggaaattgatgacgtcaacttcttcccatgtacctgcggctaccagatctgccgtttc
tgctggcatcgcatccgcacagacgagaacggtctctgcccagcctgcagaaagccatac
ccggaggacccagccgtatacaagcccctctcacaagaggagatcttgaggataaagaat
gagaagaagcaaaagcagaatgagaagaagcagaaggtaacggagaaccggaagcacctg
gccagcgtgcgcgtggtgcagaggaaccttgtgtttgtcgtgggtctctcacagaggctc
gcggaccctgaggtcctcaagaggccagagtattttggaaagtttggcaaaatacataaa
gtggtcatcaataacagtacgtcgtatgcgggctcacagggtcctagtgccagtgcctat
gttacatacatccgctcagaagatgccctaagagcaatacagtgtgttaataatgtggta
gttgatggtagaacactgaaggcttctttaggcacgacaaagtactgcagctattttctc
aaaagcatgcagtgccctaagccggactgcatgtatctgcatgaactaggagatgaagca
gctagttttacaaaagaggagatgcaggctgggaaacatcaggaatacgaacaaaaacta
cttcaagacctttacaaagcaaatcccaactttctacagacttctacgtgtggaggagaa
aagtctaaaaacaaagcaaatgctacacaaagacaaaacagcggcggcaaagagggttgg
cctttattacagggttacggtaaactagtgaatggtttacctacagaatatcggaagtcc
ccgccccttttagattgtttgacagactctgatcacatgaccccagaagatccagacact
gagttagggacagatcaaaacacaggactctcacacttcgccccagttttagaacctacc
agtcctgttgataaaccaacagaacctgcaattatagggaatggagagaatatagcacag
gtcccgagcagtgactcaccctcccctccccctgggttttcaaagccaagcctggcagta
cccattagcgtggcagaactcacagctcgctcgccatttgagggagcgcccgctgagtct
cagtcgcttttctcagacaacagtaactttagacatccgaaccccatccccagcagcctg
ccctctttccccagctccccacagggtggctctgactggcccatgacccctgagccccaa
agcctctttacctcagacaccatccctgtgtcttcatccactgactggcaagcagctttc
ggcttcggctcttcggccaagcagcagcagcagcaggaggatgatctaggctttgacccg
ttcgatgtgacgaggaaagcactagctgaccttatcgagaaggagctgtctgtgcaggaa
gcctcgccacgttccccatcacttctccctaacggccagccacgccttccgccactacag
caccgtggtctctataactccttcagcctgcccacacacggccacgccacccctggacgc
cagccatggatgggcctgcccacccgcaacaaccttgcacacttaaaccatatcacacac
agccacttcctcgacccaaactgcccaccacaacatcacagcacaggccttgggggaata
actatatcagaaaatagtggttccgtggaaaacataaatgtgaaagaatggcaggacggc
ctgagagcactccttccaaatatcaacatcaacttcggaggcatcccaaattccacatca
tcttcctcttcctcctcttcatcctcttctagtatgaaccacatgggggtcccgacaggt
tcggtgggactctcgcacagcctaagctgggacggcgtaacaagttggatggacccagcc
atcatcactggtatgccatcatccaccggcaacagtttggactgtgtgcaggacgaaaac
cctccgcactggctcaagtctctacaagctctgactgagatggatgggccaagcggttca
gtggtgtctcagcctcgtcactcaggcctggactccacggttcggcttcctctgcacaga
ggcggctgggcgccgtacctccctcccccgtcgctcactcccagccactttcactctcct
cccccaggtttccagacagccttcagacctcccgcgcagacaacagaccttctacagagc
gccgccatggaacgccactag
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