Clarias gariepinus (North African catfish): 128531836
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Entry
128531836 CDS
T10780
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128531836 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgar01009
]
128531836 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128531836 (pcdh20)
Protein phosphatases and associated proteins [BR:
cgar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128531836 (pcdh20)
Cell adhesion molecules [BR:
cgar04515
]
Cadherins
Protocadherins
128531836 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
128531836
NCBI-ProteinID:
XP_053361969
LinkDB
All DBs
Position
10:complement(11233738..11236895)
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AA seq
838 aa
AA seq
DB search
MNTLSLLQKVLLIASVRQIICHTLLTLSTVEELPEGIKIGSVGRAYSPPFQLLGSSYLRV
NKETGDLFTTLWRIDREILCPLQESGNCTILADALVGPEQELIKITIIVEDINDNAPYFE
TSEIHLRILEDACVGTRVLLDDKARDEDIGSNAEIRYHLEGAHGLFSVAQDSSAIELIVE
RELDRETQNEHHMVLVAVDCSSTPLSARVSFVVTVLDVDDQCPQFSPDNPHTVSVPGGAT
RGTTVAQVHAIDPDLGSNSQITYSFSFQISDRAKELFHLDRNTGMISIAMDMKLDSLEKH
VLKVVVNSPPCPVELTQVTVYLQPVVSLEPTINIKYVAQYRNQTIVLQENEPPTLLALLE
LRDISSVQRVLSLEEDSTEFTLKAQAGNYLLSTSKPLDFELCSEYLVTVVILDASKRVHA
KKEIIVVVEDMNDNAPAFEKTYYQVEVEENNKPDTSLVQVSAHDADSQLYGKVSYRLIHN
TPTIFNIHEETGVVSVLDPLDREQQGEYSLTVLARDNGSPPLEAFSSVSIKVLDQNDNQP
TFVTPHFIFFISEGISLLAQVGKIGIVDADEGDNGKVVDVQVLDKHAPFIMDLSQSALRC
TGEVDREKHEKYDLLLLAVDGGRPHRSSIASVTIYVEDVNDNQPQVLLPSSNLSCLTISP
NTSAGSIVTKIYAIDRDSGMNSDITYNIIGREPINPSPFQIDPHSGNITLVQQLAGRDHG
MHHLLIRVSDRGKPIPLQATVWVNLLVNEISMQCHLTTVPPYNPPASELPLLPKSYNLME
RCTELPWLLLFSGLGMMVFSVCMFLATFIICIKQKHLMRKKKCKQDHTNELELKHLNL
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgctgtctctgttacagaaggtgcttctcatagcatctgtcaggcagatcata
tgccacactctgttgactctttcgacagtggaggaactaccagaaggaattaaaataggc
agcgtagggagagcctactcacctccattccagctgcttgggagttcctatttacgagtt
aacaaggaaaccggggatttgttcacaaccttgtggaggattgacagagagatcttgtgt
ccattacaggagagtgggaactgcaccatcttagctgatgccctagtgggtcctgaacaa
gaactgataaagataactattattgtggaggatattaatgacaatgctccttattttgaa
acaagtgaaattcatttgagaattctagaggatgcatgtgttgggacaagggtgctgttg
gatgacaaggctcgggacgaagacataggaagcaacgcagagataaggtatcatttagaa
ggtgctcatggattgttcagcgtggcgcaggacagttctgccattgagctgattgttgaa
agggagctggaccgtgaaactcaaaacgagcaccacatggttcttgttgctgtagactgt
agctctacgccgttgagtgctagggtgtcttttgttgtcacggtgctagatgtagacgat
cagtgcccgcagttcagccctgataaccctcacactgtttcggtgccaggtggagcaacc
cggggaacaacagtggcccaggttcatgccatagacccagacctaggcagcaacagtcag
atcacttactccttcagtttccagatctcagatcgggccaaagaacttttccatttggac
agaaacacaggcatgatcagtatagctatggatatgaagttagacagtctggagaaacat
gttttaaaagttgttgtcaatagcccaccttgccctgtcgaactaactcaggtaactgta
tatctgcagccagtggtgagccttgagccaaccatcaatatcaagtatgtggcacagtat
agaaaccaaacgattgtattacaggagaatgagcctccaactctcttggctcttttggag
ctgagagacatctcaagtgtccaaagggttctgtctttagaggaagacagcacagaattc
actttgaaagcacaagcaggcaattatctactctcaacctcaaaaccacttgattttgag
ctttgtagtgaatatcttgttactgttgttatacttgatgccagcaaacgtgtgcatgca
aagaaagagattattgtggtagttgaagatatgaatgataatgctccagcgtttgaaaag
acttactatcaggtagaggtagaagagaacaataagcctgacacatctttagtacaagtc
agcgcacatgatgcagatagccagctctatggcaaagtgtcatacagactgatccataat
acgcctactatttttaatattcatgaagaaacaggtgtagtgtctgttttagacccttta
gacagagagcaacaaggagaatacagtctcacagtgctggccagagacaacggctcccct
ccattagaggccttttcatcagtgtctataaaggtcctggatcagaatgacaaccagcca
accttcgtcacaccacacttcatctttttcatctctgaaggcatttcactcttagcccag
gttggaaagattggaattgtggatgcagatgagggggataatgggaaagtggtggatgtc
caagtactagacaagcatgctcccttcatcatggacctgtcccagtcggcacttcgctgt
acaggtgaggtggaccgggagaagcatgagaaatatgacctgctcctgctggctgtagat
ggtgggaggcctcaccgctcctccattgcatctgtaactatttatgtggaggatgtaaat
gataaccagccccaggttctcctgccaagcagcaacctctcctgcctgaccatatcccct
aacaccagcgctggcagcatcgtcaccaaaatttacgctattgaccgtgactcaggcatg
aattcagatattacttataacattataggcagggagccaatcaatcccagcccatttcag
atcgacccacactcagggaacatcacactggtgcagcagcttgcgggcagagaccacggt
atgcatcacctcttaatcagagtcagtgatagagggaagcctatacctcttcaagccaca
gtgtgggttaatttactggtcaatgagatctccatgcagtgccatctgacaactgttcca
ccatataatcccccagcctcagagctcccattgctaccaaaatcttataatctgatggag
agatgtacagaactgccttggctcctactgttctctggtctgggtatgatggtgttctca
gtatgcatgtttctggccactttcataatttgcattaaacaaaaacacttgatgcggaaa
aaaaagtgtaagcaagatcacactaatgaacttgaactgaaacatttaaatttataa
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