Clarias gariepinus (North African catfish): 128532221
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Entry
128532221 CDS
T10780
Symbol
rnf20
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1A
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128532221 (rnf20)
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128532221 (rnf20)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
128532221 (rnf20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
BRE1
zf-RING_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
128532221
NCBI-ProteinID:
XP_053362428
LinkDB
All DBs
Position
10:7644733..7658992
Genome browser
AA seq
1002 aa
AA seq
DB search
MSAQKRPCDPSSSASAPPEKRRDRDAGDSGEGLSTGASNAVETVIKLGGVSNSEEQDIKA
LQVKNRKLGEALDQRQVIEDELRERVERLETRQATDDASLLILNRYWNQFDDNMRLIARR
CDQSGSQTVDSQPGEGRSLKPGTPEPDGDSNQERAKDRGPQGEGASSFLAMLASSSTEEM
EAELQQRVESSRKLASCAVEICESVKGTVEQLKKDLDSDTDGNLLEIAARLNTFLASENE
RLRQLTDDLKQKHSHMTSESRSLARAASRADTRISELQVSIEELQWDTEKIRRRENRLNT
HLGEVLERLNSKGYKVCGEASSVCGTITINKRKFEEMNSELEENRELAENRLSELQKLQQ
DLQTVVQDNNNMKIELMCRAEGMVRETAEYRCLQSQFSVLYNESLVLKAQLDETRARLNT
TRSARLRQLDHMENDEVSLQRKVRTEVIQLEDTLAQVRKEYEMLRIEFEQTLAANEQAGP
INREMRHLISTLQTHNQQMKAEVVKFKIRLREAQQELNQLRATKGNPAIQSQSSTDMDIK
EEPTSVLTSGASDVSVKAGSDNDSATPTTTGVSVKTEPGADPESTIKEEEKEKDKEKEEK
KEKDQKERERLTRVAVKEEKEKPGTSNSQSDDAQADRCAVIGGPKRKEVEQLKIVRVELK
KAQESQREMKLLLDMYRSAPKEQRDKVQLMAAEKKSKAEAEELRQRLRDLEERERKEGKK
MADEEALRKIRLVEEQIDILNKKLSLAKQEEDALLIEMDVTGQAFEDMQEQNIRLMQQLR
EKDDANFKLMSERIKSNQIHKLLKEEKEELADQLLTLKTQVDAQLQVVRKLEEKERLLQG
TISAAERELSLRTQALDMNKRKAQDSASLSEDLRGQLETVQQRLKEVREEVIENSISREK
ESFNARRAQEDISKLRRKIEKAKKPAESMRNGDEILNEEINEYKARLTCPCCNSRVKDAV
LTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctcagaagcggccgtgtgatcccagcagctctgccagtgctccccctgagaaa
aggagagacagagatgcaggagactcaggcgagggacttagcacaggggcaagcaacgcc
gtggagacagtcatcaaactggggggcgtctccaactcggaggaacaggacattaaagca
ctgcaggtgaaaaacagaaagttgggagaggccttggaccaaagacaggtgattgaagat
gaattgagagagcgagtagaaaggcttgagactcgccaggctaccgatgatgcaagccta
cttatcctcaatagatactggaatcagtttgacgataatatgaggttgatcgctcgccgc
tgtgaccagtcaggaagccagacagtggatagtcagcctggtgaggggcggagcctaaag
cccgggacaccggagccagatggagattctaatcaagagagagcaaaagacagaggtccg
cagggagagggagcgagctcgtttcttgccatgttggcaagtagtagcactgaggaaatg
gaggcggagctacagcagagggtggagtccagccggaaactggccagttgtgcagtagag
atttgtgaaagcgtgaaaggcactgtagaacaactcaagaaggacctggattctgacact
gatggtaaccttttggaaatcgctgctcgcctcaacacctttctggccagcgagaatgaa
cgtcttcgtcagctgacagatgatctcaaacaaaaacatagtcacatgaccagtgagtct
cgttccctggcacgtgccgctagtcgtgctgataccagaataagcgaactgcaggtgtca
atagaggagctgcagtgggacacggagaagatccgccgcagggaaaaccgtcttaacaca
cacctaggggaggtgctggaaaggctaaatagtaaaggctataaagtttgtggcgaggcc
agcagtgtgtgtgggaccatcacaatcaacaagagaaagtttgaagaaatgaacagtgag
ttggaggagaacagggagttagcggagaaccggcttagtgagctgcagaaactgcagcag
gacctgcagacagttgtccaggacaacaacaacatgaagattgagctcatgtgcagggca
gagggaatggtcagagagactgcagagtaccggtgtctgcagtcccagttctctgtgctt
tataatgaatctctggtactgaaagcccaactagatgagaccagagctcgtctgaacaca
actagatctgcccgccttcgccaacttgaccacatggagaatgacgaggtgtctctgcag
cgtaaagttcgtactgaagtgattcagctggaggatacactggctcaggttcgtaaggaa
tacgagatgctgaggattgagtttgagcaaacgctcgctgccaacgaacaagcaggccca
ataaaccgcgaaatgcgtcaccttatcagcacattgcagacgcataaccagcagatgaaa
gcagaggtggtcaaattcaaaatcaggttgagggaggcccagcaagagcttaaccagctg
cgtgctacaaagggaaaccctgccatccaatcacaatcaagcactgacatggacataaaa
gaagaacccacttctgttttaacgtcaggcgcatccgatgtctctgtaaaagcgggatcg
gataatgattcggccacgcccactaccacaggagtgtcggttaagaccgagcctggagct
gaccctgaaagcacaataaaagaagaagagaaggagaaagacaaggaaaaggaggagaag
aaagaaaaagatcagaaagagagagagaggctaactcgtgtggcagtgaaagaggagaag
gagaaaccaggcactagtaacagtcaatcagacgacgcacaggctgatcgctgcgctgtg
atcggagggccaaagagaaaggaagtggagcaactgaaaatcgtcagggtggagcttaag
aaagctcaagagtctcagagagaaatgaagctcttgctggacatgtatcgctctgctccg
aaagaacagagggacaaagtgcaactgatggctgcagagaaaaagtccaaagctgaggcg
gaggaactacgtcaacgtctgcgggatctagaggagagagagagaaaggaaggaaagaag
atggctgacgaggaagctctgagaaagatccgcttggtggaggagcagatcgacatcctc
aacaagaaactctctctggccaagcaggaggaggacgccttactgatcgagatggacgtc
acgggacaggccttcgaggacatgcaggaacagaacatacgcttgatgcagcagctccgc
gagaaggacgatgccaacttcaaactcatgagcgagcgcattaaatccaatcagatccac
aagcttctgaaagaagaaaaagaagagctggcagaccaactgctcacactaaagacacag
gtggatgctcagttgcaggtcgtgagaaagctggaggagaaagagcgccttctgcagggc
accataagcgctgcggagagagagctttctctgcgaacacaagccctggacatgaacaaa
cgcaaggcccaagactccgcgtcgctttcagaggacttacggggtcagctggaaacggtg
cagcagagactgaaagaagtccgtgaggaggtgatcgagaacagcatctccagagagaaa
gagtcctttaatgctcgccgcgcacaggaggacatttccaaactgcgcaggaagatcgag
aaagccaagaaacctgctgaaagcatgcgcaatggtgatgagatacttaatgaggaaatt
aatgaatacaaggcccgtttgacgtgtccgtgctgcaactcccgtgtaaaggatgccgtg
ctgacgaagtgcttccacgtcttctgcttcgagtgtgtaaagacgcgttacgatacacgc
cagaggaagtgcccaaagtgcaacgccgcttttggggccaacgatttccaccgtatctac
atcggatag
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