Clarias gariepinus (North African catfish): 128532233
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Entry
128532233 CDS
T10780
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128532233 (pcdh19)
Cell adhesion molecules [BR:
cgar04515
]
Cadherins
Protocadherins
128532233 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Motif
Other DBs
NCBI-GeneID:
128532233
NCBI-ProteinID:
XP_053362441
LinkDB
All DBs
Position
10:complement(15836226..16053580)
Genome browser
AA seq
1086 aa
AA seq
DB search
MDFVHVILCFLACWSGTGAVFNLKYTIEEELRAGTKIANVTADAKVAGFALGNRQPVLRV
ISNSEPRWVNLSPAGLLLTKQKIDRDAVCRQTPKCIISLEVMSNSMEICVIKIEILDVND
NAPRFPTSHIDIEISENAAPGTRFPLEGASDLDSGSNGVQTYTITPNDIFGLEIKTRGDG
SKIAELIVEKTLDRETQSHYTFEITAEDGGEPPKTGSVPLNIKVIDSNDNNPVFDEPVYT
VNVMENSPINTLVIDLNATDPDEGTNGEVVYSFINFVSNLTKQIFKIDPKTGVITVNGIL
DHEELGVHEIDVQAKDLGPNSIPAHCKVMVNVIDVNDNAPEIKLLSENSEMVEVSENAPI
GYVIALVRVSDDDSGANGKVQCRLQGNVPFRLNEFESFSTLLVDGRLDREQRDMYNLTVL
AEDSGYPPLKSSKSFAVKVTDENDNLPYFTKPHYQAMVLENNVPGAFLLAVSAKDPDLGM
NGTVSYEIIKSEVRGMSVESYVTVNSNGEIYGVRAFNHEDTRTFEFKVSAKDGGDPSLTS
NATVRIVVLDVNDNTPVMTTPPLVNGTAEVSIPKNAGVGYLVTQIKADDYDEGENGRLTY
SISEGDMAYFEIDQINGEVRTTKMFGENAKPSYQITVVAHDHGQTSLSASAYIIVYLSPD
LNTQEQIGPVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCSCFYLHRVAE
CSYGNQKKSSKKKKLSKNDIRLVPRDMEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCR
RSESTFLTVESQNSRNTPPKHGHHHTYTGQGPQQPDLIINGMPLPETENFSSDSSYINSR
AHLIKSTSTFKDMEGNSLKDSGHEESDQTDSEHDVQRGHYADTAVNDVLSMTVPPNSCQL
SDPDSSESFHCRDECRILGHSDRCWMPRVPVAAHVTSPEHSRDIIALSIEATGMDMPHYE
GCGTTKRTFATFGKDGPEGEQRSKRTSEMTTGICSPKAGGIREAGNGREAISPITSPAHV
KSPQSKPTTGYNTLKRSNVERIANHSVLRQPEGKDSEPAMSEINTLLHDGREKESPSIKR
LKDIVL
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgtgcacgtaattctgtgttttctggcgtgctggagcggcaccggggccgtt
ttcaatctgaaatacaccatcgaggaagaattgcgcgcgggaacgaaaatcgccaatgtt
acggcggacgcgaaagtagctggattcgcgctcgggaatcggcaacctgttttgcgagta
atctctaattccgaaccgcggtgggtaaacctaagcccggcaggactgctcctcactaaa
cagaaaatcgatcgcgacgctgtatgccggcagacgccgaagtgcataatttctctggag
gtcatgtccaattcgatggagatatgcgtgattaaaatcgagattctggatgtgaatgat
aacgcgccccgattccccaccagccatatcgacatagagatctcggaaaatgccgctcct
ggcacgagatttcccctagagggggcaagcgatctggactcggggagcaatggcgttcag
acatacaccatcactccaaacgacattttcggtctggagatcaagaccaggggagacgga
tctaaaatagccgagctaatagtagaaaagactcttgaccgagagacgcaatctcattat
acgtttgaaatcacggctgaggacggaggagaaccaccaaagacggggagtgtaccactt
aacattaaagtcatcgactccaatgataataatcctgtatttgatgaacctgtttacaca
gttaacgtgatggagaattctcctataaatacattagtaatagacctgaatgcaactgat
ccagatgaaggaacaaatggtgaggttgtatattcatttattaattttgtgtccaacctg
acgaaacaaatttttaaaattgatcccaaaactggtgtcataactgttaatggaatttta
gaccatgaagaactgggtgtgcatgaaatagatgttcaagccaaagatctaggcccaaat
tccattccagcacactgcaaagtgatggttaatgtaatagatgtaaatgacaatgcacca
gaaattaaacttttgtccgaaaacagtgagatggtagaggtcagtgagaatgcacctatt
ggatatgtcattgcactggtaagagtttcagatgatgattcaggtgcaaatgggaaagtg
cagtgcagactacagggtaatgtgcctttcagacttaatgagtttgagagcttctctacg
ttacttgttgatggccgactagacagggagcagagagacatgtacaatcttacagtcttg
gctgaggatagtggttatcccccacttaaaagttcaaaatcttttgctgttaaagtaacg
gatgaaaatgacaacctgccttatttcacaaagccacattaccaagcaatggtgttggaa
aacaatgtcccaggggcattcctacttgctgtgtctgctaaagatcctgacctgggaatg
aatggcacagtgtcttatgaaatcattaagtcagaagttcgaggaatgtcagtggaatcg
tatgttactgtaaactcaaatggtgaaatttatggggtcagggcttttaatcatgaagac
acccgcacgtttgaatttaaagtctctgccaaagatggaggagatccttcattaacaagt
aatgctacagtgcgcattgttgttttggatgtaaatgacaacactccagtgatgacaacc
ccaccacttgttaacggcactgcagaggtttccatccccaaaaatgctggagttggttat
ttggttactcaaatcaaggctgatgattatgatgagggagaaaatggaagactgacgtat
tccatatcagagggagacatggcttactttgaaattgaccaaattaatggtgaagtacgg
actacaaaaatgtttggagaaaatgccaagccatcctatcaaatcactgttgtggcccat
gaccatggccagacatctttatctgcttctgcatacatcattgtctacctctctccggac
cttaacacacaagagcagattggacctgtaaacctgtctctcatcttcatcatcgctctg
ggttccattgctgctattttgtttgtcacaatgatctttgtagcagtgaagtgcaaaagg
gataacaaggaaattcggacatacaactgcagttgtttttacctgcacagggtggcggag
tgctcctatggtaaccagaagaagtcaagcaagaaaaagaaattgagcaagaatgatatc
cgcctggtaccacgtgacatggaggagacagacaagatgaatgtggtgagctgctcatcc
ctcacatcctctctcaactactttgactaccaccagcagacactgccactgggctgcaga
cgctctgagagcaccttcctcactgtggaaagccagaattcaagaaatactccaccaaaa
catggccatcatcatacctacactgggcagggcccacaacaaccggaccttatcatcaac
ggcatgccactgccagagacagaaaatttttccagtgactccagctatattaacagcaga
gcacaccttatcaaaagtacctcaacatttaaggacatggaaggtaacagcctaaaggac
agtggccatgaagaaagcgaccagacggacagtgagcacgatgtacagaggggccactat
gctgacacagctgtaaatgacgttctcagtatgactgttccacccaacagttgccaacta
tcagatccagattcctcggaaagcttccactgccgggacgagtgccggattttgggccac
tcagatcgctgctggatgccacgtgtgccagtggcagcacatgtcacgtcacctgagcac
agtcgtgacatcattgccctgtctattgaggctactggcatggatatgccacattatgag
ggctgtggaaccaccaaaaggacttttgccacatttggcaaggatgggccggagggggag
caaagaagcaagagaacaagtgaaatgaccaccggcatctgcagccctaaagctggtggc
attcgtgaggctggaaatggacgtgaggccatcagccccatcacatcaccagcacatgtt
aagagtccacagtccaagccaaccactggctacaacacattaaaacgctccaatgttgag
cgcattgcaaatcatagtgtgctgcgccaaccagagggcaaagacagtgagccagccatg
agtgagatcaatacactattgcacgatggacgggagaaagaatcccctagtatcaagcgc
ctgaaggacattgtgctttag
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