Clarias gariepinus (North African catfish): 128532626
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Entry
128532626 CDS
T10780
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03030
DNA replication
cgar03420
Nucleotide excision repair
cgar03430
Mismatch repair
cgar03440
Homologous recombination
cgar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128532626 (rpa1)
03420 Nucleotide excision repair
128532626 (rpa1)
03430 Mismatch repair
128532626 (rpa1)
03440 Homologous recombination
128532626 (rpa1)
03460 Fanconi anemia pathway
128532626 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128532626 (rpa1)
03032 DNA replication proteins [BR:
cgar03032
]
128532626 (rpa1)
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128532626 (rpa1)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
128532626 (rpa1)
DNA replication proteins [BR:
cgar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
128532626 (rpa1)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
128532626 (rpa1)
MMR (mismatch excision repair)
128532626 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
128532626 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
Por_Secre_tail
Motif
Other DBs
NCBI-GeneID:
128532626
NCBI-ProteinID:
XP_053362671
LinkDB
All DBs
Position
11:18159707..18198479
Genome browser
AA seq
606 aa
AA seq
DB search
MAVKLTEGAIEALVKGKEVSNPFLQLINIRKLDSGNGPVRFRLMMSDGLYTMSSFMLATP
LNSLAEQNLVAPNCVCLLKKSVTNVLKDGRTVVIILDLEVIKPADQMAGKIGDPTPYVEG
QSKAPQALPAAPAPAPSASARPLQSQNGGSMNRGSSRDFGKKPMTAPSTPGGTSKVVPIA
SLNPYQSKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFYSL
IEQGKVYYISKGTLKIANKQFTSLKNDYEMTLNGESTIIPCDDSHDVPMVQCDFVSIADL
DARDKDAIVDVIGVCKSVEDVTRITTKNSREVSKRNIQLMDMSGKIIQVTMWGKEAETFD
GTGQPILAIKGAKLSDFGGRSLSTLFSSTLMINPDIPEAYKLRGWYDKEGHALDGQSMTE
MRGVGGGGPTNWKTLADVKNEHLGHGDKADYFTCIATIVYMRKENCLYQACPSKDCNKKV
VDQHNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDSAETLLGQKSDYIGQL
KDSNEAGFDEVFQHANFSTFVFRNRVKLETYNDESRIKVTVVEAKPVDHKEYSKRLIMNI
RKHAAH
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggctgttaaattgacagagggcgcaatcgaggcgctggttaagggaaaagaggtttcg
aacccatttcttcagttgattaatattcggaaacttgattcaggcaacggaccagttcgc
tttcgcctcatgatgagtgatggcctttacaccatgtcctccttcatgctcgccacgccg
ctgaactccctggctgaacaaaaccttgtagctccgaactgtgtctgcttgctgaagaaa
agtgtcaccaacgttcttaaggatggacgcactgtggttattatcttggacttggaggtg
attaaacctgcggatcagatggcaggaaaaataggagacccaactccttatgtggaaggt
cagtccaaagctccacaggctctaccggctgcacctgcccctgctccttctgcttcagca
cgtcctctgcagtcacaaaatggaggctccatgaatagaggctccagtcgtgattttggg
aagaagcccatgactgcccccagcacaccaggaggcacttcgaaagtagtgcctattgca
agccttaatccctaccagtcaaaatggaccattagagcacgagtcactaacaagagttcc
attcgtacctggagcaactctcgaggggatggaaagctcttttcaatggagattgttgat
gaaagtggtgagattagagtgactgggtttaatcaggaggtggacaaattctactccctg
atcgaacaaggaaaggtttattacatctctaagggcactctgaagattgccaacaaacag
ttcacatctcttaagaacgactacgagatgactctaaacggcgagtcgaccattatcccc
tgtgacgacagccatgatgttcccatggtgcagtgtgactttgtttctattgctgatttg
gatgctcgggataaggatgccattgtagatgtgatcggtgtctgtaagagtgtggaggat
gtgacgcgtattacaactaagaacagtcgcgaggtttccaagaggaatatccagctgatg
gacatgtctggcaaaattattcaagtcaccatgtggggaaaggaggccgagacatttgat
ggcaccgggcagcctatcttggctataaaaggtgccaaactctctgattttggagggcgt
tcactttccacactcttctccagcacgctgatgattaaccctgacattccagaggcatac
aaactgcgaggctggtatgataaagaaggtcacgccctggatggtcagtccatgacagaa
atgagaggagtaggaggaggtggccccactaactggaagactttggcagatgtcaaaaac
gagcaccttggtcacggagacaaggctgattactttacctgcattgccaccattgtgtac
atgcggaaggaaaactgcctatatcaggcctgtcccagcaaggactgcaacaaaaaggtg
gtggaccaacataacggcatgttccgctgtgagaagtgtgacaaagagtttcctgacttc
aaatatcgtctcatgctctctgcaaatattgcagactttggagataaccagtgggtgacg
tgctttcaagacagtgctgagaccctcttggggcagaaatcagattacataggccaactt
aaggactctaatgaggctgggtttgatgaggtcttccagcatgccaatttcagcactttt
gtgttccgcaaccgcgtgaaattggagacctacaatgatgaatctcgcattaaagtaaca
gttgtggaggccaagcctgtggaccacaaagaatacagcaagaggctgatcatgaacatc
aggaagcatgcggcgcattaa
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