Clarias gariepinus (North African catfish): 128533048
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Entry
128533048 CDS
T10780
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128533048 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128533048 (prpf8)
Spliceosome [BR:
cgar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128533048 (prpf8)
Complex C
U5 SnRNP specific factors
128533048 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
128533048
NCBI-ProteinID:
XP_053363224
LinkDB
All DBs
Position
11:complement(12123610..12138273)
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGVPPPAPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDTQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDADEDSSVAEWLYEHQPLKDTTKYVNGTTYRRWQFSLPMMST
LYRLANQLLTDLVDRNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDS
VTESAHPIRLYCRYIDRIHMFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLVAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYELQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcgtttccgtacagaggcgtcccaggtgggatgccaccgggtgttcctcct
cctgctcctgttcctgactacatgactgaggagaaactgcaagagaaagcccgaaaatgg
cagcagctgcaggcaaagcgctactctgagaagaggaaattcgggtttgtggacactcag
aaggaggacatgcctcctgaacatgtgcgcaaaattatcagggaccatggagacatgacc
aacaggaagttccgtcatgacaaaagagtctaccttggagctctgaaatacatgcctcac
gcagtgctcaagctgctggagaacatgcccatgccctgggagcagatcagggatgtccca
gtgctttaccacatcacaggggccatttcctttgtgaatgaaattccctgggtcattgag
ccggtctacatcgcacaatggggtacaatgtggatcatgatgcgacgtgagaaacgagac
aggcgacatttcaagcgtatgcgtttccctcccttcgatgatgaagagcctcccctagat
tatgcagataacatcctcgatgtggagcctctggaggccattcaaatggagttggacgct
gacgaggacagctctgtggctgagtggttatatgagcatcagcccctgaaggatacaact
aagtacgtgaatggaactacatacagacgttggcagttcagtttgcccatgatgtcgaca
ctgtatcggttggccaatcagctgcttaccgacttggtggacaggaactatttctacctg
tttgacctgaaggccttctttacttcaaaggcactgaacatggccattcctggaggaccc
aaatttgaaccccttgttagagacatcaatttacaggatgaagactggaatgagttcaat
gacataaacaagatcatcatcagacagcctattaggacagagtacaagattgcttttccg
tacttgtacaacaaccttccccatcatgtgcacctcacctggtaccacacacctaacgtg
gtgttcatcaagactgaagatcctgatctgccagccttctactttgacccactcatcaac
cctatctctcacagacactcagttaaaagccaggagccactgcctgatgatgatgaggag
tttgaacttcctgagtatgtggagcctttcctcaaagagacacctttgtatactgacaac
acagccaacggaattgctctattgtgggcacctcgtccgttcaacttgcggtcagggaga
acccgtcgtgccatcgatgttcctctcattaagaactggtatcgtgagcattgtcctgca
gggcagcccgtaaaagtacgtgtctcttatcagaagcttctgaagtactacgttctcaat
gctctaaaacacagaccaccaaaagcacagaagaagaggtaccttttccgttccttcaag
gccactaaattctttcagtcaacaaagctggactgggtggaggtggggctccaggtttgc
cgacagggttacaacatgctgaacctgctgattcacagaaagaacctcaactacctgcac
ttggactacaacttcaacttgaagcctgtgaaaacactcaccacaaaagagcgtaaaaag
tcccgtttcgggaatgcgttccacttgtgtcgtgaggttcttcgtctgagcaaactggtt
gtggacagccacgtgcagtacagactggggaatgttgatgcattccagttggcagatgga
ctgcagtatatcttcgcacatgttggtcagctgactggcatgtatcggtacaagtacaag
ttgatgaggcagatcaggatgtgcaaggacttgaaacatctaatttactatcgcttcaac
acaggtccagttggcaagggtccaggttgtggcttctgggcccctgggtggcgggtgtgg
ctcttctttatgaggggcatcacacccctgctggagaggtggcttggcaacctgttggcc
agacagttcgaaggtcgtcactccaagggagttgcaaagaccgtgaccaaacagcgtgtg
gagtctcattttgacttagagctgagagcggctgtgatgcatgacatcctggacatgatg
cctgagggaatcaaacagaacaaggccaggaccattctgcagcatctcagtgagtcttgg
aggtgttggaaggcaaacattccctggaaggttccagggcttccgacccccattgaaaac
atgatcttgagatatgtcaaggccaaagctgactggtggaccaatacagctcattacaac
cgagagcgaatcaggcgaggagcaactgtggacaaaactgtctgcaagaaaaaccttggc
cgtctcacacgactctacctgaaggctgagcaggagagacaacacaactacctaaaggat
ggaccatacatcactgctgaagaggcagtggctatctacacaaccacagtgcactggctg
gagagccgacgcttctccccgattccttttccccctctgtcatacaaacatgacaccaag
ctgctcatcctggctctggagaggctcaaagaggcctacagtgtgaagtcaaggttgaat
cagtctcagcgtgaagagttgggtctgattgagcaggcgtacgacaatcctcacgaggct
ctgtccaggatcaagcgtcatctcctcactcaaagagcattcaaggaggtgggcattgag
ttcatggacctgtacagtcacctagtgcctgtgtatgatgtggaacctttggagaagatc
acagatgcttacctggatcagtacttgtggtatgaagctgacaaacgcaggcttttccca
ccttggatcaaacctgctgacacagagccacctccactgctggtatacaagtggtgccaa
ggaatcaacaacctgcaagatgtgtgggagaccaccgagggagagtgtaacgtcatgctg
gagtcacgctatgagaagatgtatgaaaagatcgacttgacgctgcttaacaggcttctg
cgtcttatcgtcgaccacaacattgctgattatatgacggcaaagaacaacgtggtcatt
aactacaaggacatgaaccacaccaactcgtacggcatcatcaggggcctgcagtttgcc
tccttcattgtgcagtactatggactggtgatggacctgctcgttctgggtcttcaccgt
gccagcgagatggctggacctccacaaatgcccaacgattttctcagcttccaggacagt
gttaccgagagtgcccaccccattcgtctgtactgcagatacatcgaccgcatacacatg
ttcttcaggttttctgctgatgaagccagggatctgatccagcgctacctgactgaacac
cccgatcccaataacgagaacattgtaggctacaacaataagaagtgctggcccagagat
gctaggatgagactgatgaagcatgatgttaacctgggccgtgctgtgttctgggacatt
aagaatcgtcttccacgctctgtgacgactatacaatgggagaacagctttgtgtcagtg
tacagtaaagataaccctaacttgctcttcaacatgtgtggatttgagtgccgcatcctg
cccaagtgccgcaccagttatgaggagttcacccacaaggatggagtgtggaacctacag
aatgaggtgactaaggaaaggacagcccagtgctttctgcgagtggatgatgaatcaatg
cagaggttccataacagagtgcgacagattctcatggcctctggatccaccactttcacc
aagatcgtgaacaaatggaacacagctctgattggtctgatgacctatttccgtgaggct
gtggttaacactcaggagctcctggacctcttggtgaaatgcgaaaataagatccagacc
cgtattaagattgggcttaactccaaaatgcctagccgtttccctcctgttgtcttctac
acccccaaagagttaggaggtctgggcatgctttccatgggtcatgtgctcatcccgcag
tctgacctgaggtggtcaaaacagacagacgtgggcatcactcacttccgttctggtatg
agtcatgaggaggatcagttgattcccaatctgtaccgctacatccagccatgggagagt
gagttcatcgactctcagagagtctgggctgagtatgctctcaagagacaggaggccatt
gcccagaacaggcgtttgaccctggaggatttggaggattcttgggacaggggcattcct
cgtatcaacaccttgttccaaaaagacaggcacacactggcctatgacaagggctggaga
gtccgaacagacttcaaacagtatcaggtgctaaagcaaaatccgttctggtggactcac
cagagacacgatggaaaattgtggaatttgaacaactaccgcacagacatgatccaagca
ctaggaggagtggaaggaattttggagcacactttgttcaaggggacatactttcccacc
tgggagggtcttttctgggaaaaggccagtggttttgaggagtccatgaaatggaaaaaa
ctgaccaatgcccagagatctggtctaaatcagatccccaatcgacgattcactttgtgg
tggtctcccacaatcaacagagcgaacgtatacgtgggtttccaggtgcagttggatctc
actggaatcttcatgcatggcaaaattcccaccctcaagatctccttgatccagatcttc
agagctcacttgtggcagaagattcatgagagcattgtcatggatctgtgtcaggtgttt
gaccaagaactggatgctcttgagattgaaactgtccagaaggaaaccatccatcctagg
aagtcttataagatgaactcctcttgtgcagatattctgctttttgcttcctacaagtgg
aatgtttcaagaccatcactgcttgctgactccaaggatgttatggacagcacaaccact
cagaagtactggattgacattcagctcagatggggagactatgactcgcatgacattgag
agatatgccagggccaaatttctggactacaccacagataacatgagtatctacccatcc
cctactggggtgctagttgctattgatctggcatacaatctacacagtgcgtatggaaat
tggttccctggcagcaagcctctgatccagcaggctatggcgaagatcatgaaggccaac
cctgccttgtatgtactgagggagcgcatccgtaagggtctgcagctctactcgtcagag
cccactgagccctacctgtcctcacagaattacggagaacttttctccaatcagatcatc
tggtttgtggatgacaccaacgtgtaccgtgtcaccattcacaagacctttgagggcaac
ttgacgacaaaacccatcaacggggccattttcatcttcaatccaagaactgggcagctc
ttcttaaagatcattcacacatctgtgtgggctggacagaagcgtctgggacagttggcc
aaatggaaaactgctgaggaagtggctgcgcttattcgatcactgcctgttgaagagcag
cccaagcagatcatcgtgaccaggaaagggatgttggatcctcttgaggtgcacttgttg
gatttccccaacattgtcatcaaaggctctgagcttcagctgccattccaggcctgtcta
aaggtggagaagtttggggacctcattctaaaggccactgagccacagatggtcctgttc
aatctgtacgatgactggctgaagaccatttcttcttacactgccttctcacgtctgatc
ttgatcctgagagccctccacgtgaacaacgatcgtgcgaaggtgatcctgaagcctgac
aaaaccaccatcactgagccgcatcacatctggcccactctgacggacgaggagtggatc
aaggtggaggtgcagctaaaagatctcatcttggcggactatggcaaaaagaacaatgtg
aacgtggcttctctgacacagtctgagataagggacatcattttgggtatggagatttct
gctccctcacagcagaggcagcagattgctgagattgaaaagcagactaaagagcagtct
cagctgacagctacgcagactcgcaccgttaacaagcacggagatgaaatcattacgtcc
accacaagcaactacgagacacaaaccttctcctcaaagactgaatggagagtcagggca
atctctgcagcaaacttgcacttacgtaccaaccacatctacgtatcttctgatgacatt
aaagaaactggatacacttacattctgcctaagaatgtcctgaagaagtttatctgcatc
tctgacttgcgtgcgcaaattgctggttatctgtatggcacaagtcctccagataaccca
caggtgaaagaaattcgctgcattgtcatggtgcctcaatggggcactcatcaaactgtc
cacctccccaatcagctgccacagcatgaatatctcaaggaaatggagccgcttggttgg
atccacactcaaccaaatgaatcacctcagttgtcgcctcaggatgtcaccacacatgct
aaagtcatggctgataatccatcctgggatggcgaaaagaccatcattatcacttgcagt
tttactccaggttcctgtacattgactgcctataagctgactcctagtggatatgagtgg
ggcagacagaacacagataagggcaacaaccccaagggttacttgccctctcattatgaa
agggtgcagatgctgctgtctgatcgcttcctcgggttcttcatggtgcctggccaagtc
tcctggaactacaatttcatgggtgttcggcacgaccccaatatgaaatacgagctgcag
ctgtcgaacccgaaagagttttatcacgaggttcatcggccttctcacttcctcaacttt
gcgtcgctgcaggagggtgagatctacaatgctgaccgtgaggatatgtatgcttag
DBGET
integrated database retrieval system
