Clarias gariepinus (North African catfish): 128533180
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Entry
128533180 CDS
T10780
Name
(RefSeq) protein Atg16l2
KO
K20868
autophagy-related protein 16-2
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128533180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128533180
03029 Mitochondrial biogenesis [BR:
cgar03029
]
128533180
Membrane trafficking [BR:
cgar04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
128533180
Others
Specific organelles associated proteins
Auto phagosome
128533180
Mitochondrial biogenesis [BR:
cgar03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
128533180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
ATG16
Beta-prop_EML
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_NWD2_C
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Ge1_WD40
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
B-prop_COPA_B_2nd
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
128533180
NCBI-ProteinID:
XP_053363408
LinkDB
All DBs
Position
11:complement(16346187..16375799)
Genome browser
AA seq
596 aa
AA seq
DB search
MATTELTEPEKQFTKPSPDPKHSEPWKRHIIRQLKYRDKAQKIVFQDVIRSYVNLLERCA
QSALITQSLFSPLRPFSISEDLSSLKTATGELAYKVVELQKEIKIKDAFLEKQHAKLHDT
QNCVMAVELEKGRLGSEVKKMTDSNLLLKSNYDTLREGYQHLDEVYRKENLHGSAVLEDM
ICLKGQAAARMNHHNERRQRARHAGLHKELEVAASKSLNIDTVPQSVSLPSSPLLRRNES
EEGLKGSSHLRAFRSASVTSPRILDSIRGLFEKKRRGNSLSSLEEDLCTPLGVCLIARVP
TKVTHAVDAHELGINAVRFSPRSNLLATGGTDRVIKLWDISSGLLHYRGTLDGSNEGITS
IEFDPTGSRILAGSYDNSALIWRLDDSVPKFTLTGHSRKVTAARFKCNLRQVVTGSADRT
VKIWDLQRAACIQTIEVSSYCSDVVCSEYYTISGHFDKKIRFWDSRTASCTQEVPLQGRV
TSLDISPNHRELLSCSRDESLQLVDLRMSNTRMTFRAEGFKCGSDSTKAIFSPDGSYLAA
GSADGGVYIWNISTGNLERRLPDMHRTSVNAVAWSMSGEYMVSVDKSRCAILWSDI
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggctactacggagttgacggagcctgagaaacagttcaccaagcccagcccggaccca
aaacactccgagccatggaaacggcacatcatacggcagctgaaatatcgcgataaggcg
cagaagatcgtcttccaagatgtgatacgatcatatgtcaacctgctcgagcgctgtgcg
caaagtgcattaatcacccagagcctcttctccccgctgagaccattctccatatctgag
gatttgtcttccctgaagacagccactggtgagcttgcttacaaagtagtggagctgcag
aaagagataaaaatcaaggatgcttttcttgaaaagcaacatgccaagttgcatgatact
cagaactgtgtaatggctgtggaattagagaaaggcagactggggtctgaggtgaaaaag
atgactgatagcaacttactcctcaagagtaactatgacactctgcgtgagggctatcag
cacttggatgaagtttacagaaaggagaatctccacggctcagccgtcctggaggacatg
atttgcttgaaaggacaagctgctgctcgtatgaaccaccacaatgagaggagacagagg
gccagacatgcaggtcttcataaggaacttgaggtggctgccagtaagagtttaaacatt
gacacagtaccccaaagtgtgtcattaccatcatcaccattactacgcaggaatgaaagt
gaagagggtttgaaaggcagcagccatttacgcgctttcagatcagcttcggttacttcc
cctcggattcttgactcaatcagaggtttatttgaaaaaaagaggcgaggtaattcactt
agcagtttggaagaagatctctgtactcctcttggagtttgtttaatagctagagttcca
accaaagtcactcatgcagtggatgctcatgagcttggaatcaatgcagtgagatttagc
ccgaggtcaaatctgctggctacaggaggcacagacagggtaatcaaactttgggacatc
agctcaggcttgctgcactacagagggacactagatgggagtaatgagggaatcaccagc
attgagtttgaccctacgggcagccgaattttagctggatcatatgataactcagctctt
atttggcggttggatgactctgttccaaagtttacattgacaggccattctcgcaaagtc
acagcagctaggtttaagtgtaacctaaggcaggtggtgactgggagtgcagacagaact
gtaaaaatctgggacctgcaacgtgctgcctgtatccagaccattgaggtatcatcctac
tgtagtgatgtagtgtgttcagagtattacacaatcagtggccattttgacaaaaagata
cgtttctgggacagcaggacagcaagctgcacacaagaggttcccttacagggcagggtg
acatcacttgacatctcacccaaccacagagaattattaagttgctcaagagatgagagc
ctgcagctggtggatctgagaatgagtaataccagaatgaccttccgggcagaaggtttc
aaatgtggaagtgacagcaccaaggctatcttcagtccagatggaagttacctggcagct
ggctctgctgatggtggtgtgtacatctggaacattagcacaggcaacctggaaagacgg
ctaccagacatgcatagaacctcagttaatgcagtggcttggtcaatgtcaggcgagtat
atggtgagtgttgataagagccgatgtgccattctgtggagtgacatctga
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