Clarias gariepinus (North African catfish): 128533219
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Entry
128533219 CDS
T10780
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128533219 (hfm1)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
128533219 (hfm1)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Meiosis-specific proteins
Others
128533219 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
DEXQc_Suv3
Sde182_NH-like
Motif
Other DBs
NCBI-GeneID:
128533219
NCBI-ProteinID:
XP_053363454
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All DBs
Position
11:1622346..1663162
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AA seq
1432 aa
AA seq
DB search
MSESSSEFSFSLDHLFFDRPVVHKVKPLSQEQSGAWKLDAAPEISAIPPTQELQKEAESL
ASTAYSQKQRKFLPPFCRLGVGAGRCVKGQTGDEEQPVFEVWGPKISASGFRPSTSSHHG
CPVASQKPAETGVFHPTGGQLKTRLFKTPMRKLDSASIPEVNHPSLSSVSTSTDYPFLPP
QSVAASCSSLGELDPEEGCSSTQQIRSVVRPLTPKPFQIQGASGPELLRPVSEIPVKFQS
VFNEFPYFNYVQSKALDDVLYSSRSFVACAPTGSGKTVLFELAIIRVLMETTEPWHDVKA
VYMAPIKALCSQQYENWKRKFGPLGLNCKELTGDTEIDDYFEIQDAHLIMTTPEKWDSMT
RKWRDNVLLHSVRLFLIDEIHVVKDVTRGATLEVVVSRMKTMQSYRTAEDPHAKACMRFL
AVSATIPNLKDISEWLSDESGPAACLEMDESHRPVKLRKVVLGFPCGNKQTEFKFDLSLN
YKMASIIQTYSEQKPTLVFCSTRKGVQQSAAVLAKDARFIMSIDHRQRLMKYANSILDTK
LRDLIMCGVGYHHAGVSVSDRKLVEDAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMH
YVGGACEEYSEADMLQMIGRAGRPQFDTSATAVILTRAQTRDKYLQLLSGSETIESSLHT
NLVEHLNAEIVLYTISDVNMALDWIRSTFLYIRALKNPKHYGFSTDLNKCGIETKLQELC
LRNLNALASYNLITMDEDINIKPRESGKLMARYCVAFDTMKQFMKVTGTETMSELIDIIS
KVKEFSDVQLRVSEKRTLNMLNKDKNRVTIRYPMEGKIKSNDMKVNCLIQAQLGCIPIQE
FGLTQDTGKIFRSGIRLSKCLVEFLAQHSKKNFSARLNAVILAKCFRAKLWEDSPYISKQ
LDRIGLSLANAMVNAGLTTFSKIEAINARELELIVNRHPPFGNQIKEAVSRLPKYEVSLE
QLPRYSVSSAEIVITVNLKNFTQLMAKRTAPDHHYVTLLIGDCDNNVVFQQKISDNLLLK
SGSWSRRIEVTRTPAGDEISINLISSEYVGLDIQQKFSAFYSGAKTFRAESYEVESPAFI
RTSRGALQKSNITEKPATPHATTVQRDRFKTDTAETDLSKRQCHHYCRNKQLCGHECCKS
SVQKRLISQEPTFTSYLQDLKTRNEKLMETPVKRLKLRMKRETEALNMQQFSYTPKEAMP
AAKWIQKPPPTPQPQVYFEPSHDECDETTEDFYCEIDDSVDEQAFQTYTNTSSPKVSVRR
EGTTPALSRIPQDEVSVSLADPGTHVGALNVTFDLALDDWDDFSDDQFMIACEESYHQGR
GSPQTTDGLVSVPPVCVEAEGGSLRAQKPSRVGRASLAPRNIAKVNLTTKRAYPEFSVGS
EKCPLTKPNENVSLNFITQGAGAGDERGGTGRAENRNDTEVDMFFGIFDGIF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtcatcatcagagttcagcttttcgttggatcacctgttctttgacagacca
gtggttcataaagtgaagccattaagtcaggagcagagtggagcgtggaagctggatgcc
gcacctgagatttccgcaatcccaccaactcaggagctccagaaagaagcagaaagtctg
gcttccactgcttattctcagaagcagaggaagtttttgccgcctttctgtagactcggt
gtcggtgcaggacggtgtgtcaaaggtcagacaggtgatgaagagcagccggtgtttgaa
gtgtggggacctaaaatatctgcgtctggattccgtcccagcaccagtagtcatcatggc
tgccctgtggcatcacagaaaccagcagaaaccggagtttttcatcccactggtggtcaa
ctcaaaaccaggttattcaaaacccccatgaggaagctcgacagtgcttccattccagaa
gtgaaccatcccagcctcagttcggtctctacgtcgactgattatccatttctgcctcct
cagagcgtcgctgcttcctgtagctctttaggagaactcgatccggaggagggatgcagc
agcacgcaacaaatccgctctgtcgttcgccctctcactccaaagccttttcagatacaa
ggcgcatctggaccagagctcctccgtcccgtgtctgaaatcccggttaaattccagagc
gtcttcaacgagttcccatacttcaactacgtgcagtctaaagcactggatgacgttctt
tacagcagcaggagcttcgtcgcctgcgcccccactggctcggggaagacggtgctgttt
gagcttgcgatcatcagagtgctgatggaaacaacggaaccttggcacgacgtcaaagcc
gtctacatggctcccattaaagctctctgcagtcagcaatacgaaaactggaagcggaaa
ttcgggcccctgggactcaactgcaaagagctgacaggagacaccgagatcgacgactat
ttcgaaatccaggacgcccatctcatcatgaccacaccagaaaagtgggacagcatgacc
aggaagtggagagataacgttttactgcactctgtccggctcttcctgattgacgagatc
cacgtggtgaaagacgtgacgcgaggagccactctggaggttgtggtgagcagaatgaag
accatgcagtcgtaccgcaccgctgaggatccacacgcgaaggcctgcatgagattctta
gcggtctcagccaccatcccaaacctcaaggatatatccgagtggctgtcggacgagtcg
ggtccagccgcttgtttggagatggacgagagccacagaccggtgaaactgaggaaagtg
gtgttggggttcccgtgtggaaacaaacagactgaattcaagttcgacctgtctctcaac
tacaagatggccagcatcattcagacgtactccgagcagaaaccaacgctggtgttttgt
tcaacaagaaaaggagttcagcagtccgctgcggtgctcgccaaggacgccagattcatc
atgagtatcgatcacagacagaggttaatgaaatatgccaactctattcttgataccaaa
ctcagagatctgatcatgtgtggtgtggggtatcatcacgccggcgtcagcgtgtcggac
agaaaactggtggaggacgcattcacagtcggcgacctgcctgtcctcttcaccaccagc
accttggcgatgggtgtgaacctgccagctcacctggtggtcattaaatccaccatgcac
tacgtgggcggagcctgtgaggagtacagcgaggccgacatgctgcagatgatcggtcga
gcaggcagaccgcagttcgacacatcggccactgctgtgatcctgacccgagctcagact
agagacaagtacctgcagttactgagcggttcagagaccattgagagcagcttgcacaca
aacctggtcgagcacctgaatgccgagatcgtcctttacaccatctccgacgtcaacatg
gctttagactggattcgctccacgttcctctacatccgagcattgaagaatcccaaacac
tacggtttttctacggatctcaacaagtgtggaattgaaaccaaactacaagagctttgt
ttaagaaacctgaatgcgttggcttcttacaatttgatcacaatggatgaggatataaac
atcaaacctagagagagtgggaagctgatggctcgatattgtgttgcatttgataccatg
aagcagtttatgaaggtgaccggtacagaaaccatgtctgaactgattgatataatatct
aaggtgaaggagttcagtgacgtccagctgcgggtcagtgagaagagaaccctgaacatg
ctgaataaagataagaacagggtcactatcaggtatccgatggaaggaaagatcaaaagc
aatgacatgaaagtgaactgtttgattcaggctcagctgggctgcatcccgatccaggaa
ttcggactcacgcaggacactgggaagattttcaggagcggaatcagacttagcaaatgc
ctagtggagtttctcgctcagcactccaagaagaatttttcagcccgactcaatgccgtg
attctggccaagtgcttcagagccaaactgtgggaggattcgccctatatctccaaacag
ctggacaggattggtttatctctggctaatgcaatggtgaatgctggactgactacattc
agcaagattgaagccatcaatgctcgagaactggagctgattgtgaaccgacatccaccg
tttggaaaccagatcaaagaagctgtcagcagactcccaaaatatgaagttagtcttgaa
cagcttcctcgttacagtgtctcctcggctgagatcgtgatcactgtaaacctgaagaac
tttacacagctgatggcgaaaaggaccgcaccggaccatcattatgtcacactcttaatc
ggagactgtgacaacaatgtcgtcttccaacagaagatctcagacaatttactgctgaag
tctggaagctggtcaaggaggatcgaggtgacgagaacgcctgctggagacgagatcagc
atcaacttaatcagctccgagtacgtgggactggacattcagcagaaattcagtgccttc
tactcaggagcaaagacgtttagagctgagtcgtatgaagtggagagtccagcgtttata
aggacctcaagaggagctctacagaagagcaacatcacagagaaacctgctacaccacac
gcaaccacagtacagagagatcgctttaaaacagatactgctgagacagatcttagcaaa
cgacagtgtcaccactactgtagaaacaaacagctctgtggtcacgaatgctgtaaatcc
agtgtacagaaaaggctcataagtcaagagcccacgttcacatcatatctccaagattta
aagacgagaaacgagaagctcatggagaccccggtcaagcgcttaaagttgaggatgaaa
agagagacagaggccctgaacatgcagcagttctcctacacgcctaaagaagcgatgccg
gctgctaaatggattcagaaacccccccctacacctcagccgcaggtgtattttgagccg
agtcacgatgaatgtgacgagaccactgaagacttttattgtgaaatagatgactccgtg
gacgagcaggcctttcagacttacactaacacgagcagtcctaaagtttccgtgaggaga
gaaggcacgaccccggcgctgagcaggatccctcaagacgaagtctccgtctcactcgca
gaccccggcactcacgtaggcgccctgaacgtgacctttgacctggcactggacgactgg
gacgatttcagtgacgatcagttcatgatagcgtgtgaggagtcgtaccatcaggggcgt
ggctctcctcagacgacagacggtttagtttcagttcctcccgtctgtgtggaagctgaa
ggagggtcactgagagctcaaaaaccatcaagggttggacgtgcgtctctggcaccgcga
aatatcgcaaaagtgaatttaactacaaagagagcgtatccagaattttctgtcggctca
gagaaatgtccgctcacgaaaccgaatgaaaacgtctcgctgaactttatcacacaagga
gctggagcaggcgacgagcgcggaggcaccggcagggctgagaatcgtaacgacactgag
gtcgacatgttctttgggatatttgatggaattttctag
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integrated database retrieval system
