Clarias gariepinus (North African catfish): 128533390
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Entry
128533390 CDS
T10780
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03440
Homologous recombination
cgar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128533390 (brca2)
03460 Fanconi anemia pathway
128533390 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128533390 (brca2)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128533390 (brca2)
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128533390 (brca2)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
128533390 (brca2)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
128533390 (brca2)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
128533390 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
128533390 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
128533390
NCBI-ProteinID:
XP_053363618
LinkDB
All DBs
Position
11:complement(6993465..7016135)
Genome browser
AA seq
2543 aa
AA seq
DB search
MFLLFYLFCLIEELGPLNPDWFEELTLRAFEAGCNNSNVVEDETSAHKDEGAFRAPAKTP
VLDSQMCSTPRIFRRGQQHSPASCLEDSLDSGMQNLFPVPPGAESSPCLFGLAKGSEQFE
KGWGSLNTSECLDLLDTPTDLKTQASSAQRICESLGAQLNPDLSWSSSFNTPSALTPTVI
LSKREDQSPPVSFLRDKEVIIVRKLFPSLSKGTDASSAQHNDESFQADEQKSNSSFENKD
GVWKQTVPDAITDGAVRNTVESVLHGSEDVLSFFFTNSGSALRRVKTQERKKRVNGVSKD
VKSRDNLVALDHTTDCTPASKTDTNAGVAILKSPLFTSQLDEKDFSQWTPLSLSDVHDPK
TNQVCVSELQSKLAGPQVHSSAGNDVCNKYIAQSFSHASEQQRASPDQCLEKSQGRNSFL
ETSPALTFSRKTRKFVYRVQNTLKSERINSVTDDVAEKPNQDSSQCHREEATDTRDCSET
TIKSLNLDPDLDMTQLCCAFEEDFTQELNMSKPPHEIRQTSRISMPVCSTTELSKTQLKT
EPAIQSEGHVDHLVDEGISLTDIQSIESTVRNSGCTIGFSKETQSCAGTEHLNYGFKTAS
NKPIVVAPEALEKAKAALDESVEPTTHTGATTAGTMRCDSDKPEKTLSESHHPGHDAVKS
EAVAEDVPDTFAWETNESGFKTASNKSIAISTANLEKAKDFFTQLDEAKSDTRLSYNCDS
KKSWKSSQRSNGHEEDRGSSTLTASQRADVTELCSMLEEAGSQYEFTQFNHTKMSSKCPE
SVQLEREFDPEILDGIDFDDSFNCDLADKQLTKKHPAKSILNGLTSIQDINVKNPSCANP
SEIPDDDSVQRKTFQSGFKTAKGNAVIVSEKCLSKAKSLFADIEDGDGNVGLESDTAKQE
KNQSGDHQNKSCRMTVESDPELNTRLNLVCNGKANSVTKEANTTNDRVNLEILQGDLIPS
NAVNFGFTTAGGKEVKISEKALENAKKLLNEAANEKDSGKNSVSRTPVRNPSHAMAEVLH
DSKTSDISLPRDGKEKGPEVKQAAFPAPRSVESNGFQTANGKMVSVSVSAIKKTKTIFGV
VQDGSRRADATDPKEEPARLNFGGDVGQHAFANGFKTASGKGVSFSEKAFMKAKTFFESC
DPDCVDILRVKGDGASKMDDHGFEVGVRNVPRSPGTDLLNREEFKRDSTDRNEYVKRKFS
KTSGETLQPQGFSTAGGATVSVSARVLNRATAMLDDLNATPSGEKRLRISEGKTISEDKT
DISEKPCGFSTASGRKVAVSEKALEKAKSLFTDCDVDGLGPDPGHLSAPKTSGAGPENTR
STVNIASSKHVTGSEKEVTGKGKDLFVTRDVASINLVQTRQNSSESLGYNKECVQADAEK
SEASYKKMDKDLGSGNPGFSTASGKGVCVSKSALKVAFELFRDCNVEPVTNDQDQIITNG
ANLNKTLVVPKATDASPSLASQATCHDPPLLGHHSLNLDGCTVTQQRYFEQEAMACTKAL
LEDDLNENGLSGSDAIRKPSPTVTQETCSEVRMGMRKRTSDGKSLTGQPPLKRRLVSEFE
QISEDRTANAPVKCSPNGSLKDRRVFKYNLKPNITCPSRNVEGPTPANPGHLKSRPSDLR
APVFIPPFRNNPKSETPKSCFPVTAAHVPSTFVPPVTKKEASGSVSVTDSSQSSGDSAGT
TTSRIHSAEKPEDQKLTTDTIREETLENHTTLPPESNVIWQQTLELAKDMQNMRIRKKTR
QRVRPLPGSFYLAKTSGVSRVSLKEAVGHKCPELHTEEQLYQHGVPFKVSQITSENAESF
QFSCDEFFKREVLRENGGVQLADGGWLIPDNRGMLGKDEFYRALCDTPGVDPKLISEAWV
YNHYRWVVWKRASMERAFSEVMGGRCLTPEQVLLQLKLRYDVEVDHSRRSALKKIMERDD
TPAKTMVLCVCGIAKRDDNPVRTEGAVDATDQKSESPVAILWLTDGWYQIKALLDLPLTT
MLRKGRLRAGTKLVIHGAELIGSQDACPPLEAPDSLMLKISANSTRRARWDTKLGFHKDP
RPFPLLLSSVFATGGAVSCVDIVVLRSYPTQWMEKKPGSVFVFRNERAEDREAARYNSTK
QKTMELLFSKIQAQIEKEEEEKKNGKRSRTFSLNEIKSLQEGEELHDALESDPALVEAHL
STQQVKAVSSYRRELTEKKRAELQDRVHKAVQEVEGGCAPRDVTPVWKLSIADSNDLHSS
RVYTLNIWRPSVELRSLLREGCRYKAYHLATSASKKRSDISNIQFTATKKTQFQDIEVCP
EWLSLHFPARQSVKFRDLKSPGFSSPCGEVDIVGYVISILEKQGPSPVLYIVDEKFDFIS
VRICSSLAVLALEDVVKPLALLAVSNLQLRQQSGPVPGLYAGEQALFSTSPKEAHLLEDI
SRLKKFVEDYEHFFIAAEEKLSNLIPTFFLNSCESPRTPGLTSAPKPNDRNNVTPHQTSR
LFSPFTPVTKQTPVPTGNSDTKDPRSVKRKRGMEYLTRLQNPAPLVPLGMVRSPRVSKTF
NPPRRREAPHNPQAERTNTNTTR
NT seq
7632 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgctgttctatttgttttgtttaattgaagaacttgggccacttaaccctgac
tggtttgaggagttgacgttgagagcttttgaagctggatgtaataactccaatgttgtc
gaagatgaaacctcggcacataaagatgaaggtgctttcagagctccagctaagacgccg
gtcttggacagtcagatgtgttcaacacccaggatatttcggcgcggacagcaacattct
cccgcatcgtgtctcgaagattctctcgattcgggaatgcagaacctgtttcctgttcca
ccaggtgcagaatccagcccgtgtctgtttggcttagctaagggcagcgagcagtttgaa
aaaggctggggatccctgaatacaagtgagtgcttggatctacttgacacaccaacagat
ttaaaaacccaggcttcgtctgcacagcggatctgcgagagcctcggcgctcagttaaat
cctgatctgtcatggagcagctcttttaacacaccgtcagcacttacccccaccgttatt
ttgtccaaaagagaagaccagtctccaccagtaagttttctcagagacaaagaagtgatt
attgtccgaaagctgtttccgtcactttcaaaaggcacagacgcatccagtgcgcaacac
aacgacgagagtttccaggcagacgaacaaaaatctaattcgtcctttgagaataaagac
ggtgtttggaagcagacagtgccagatgcgataactgacggcgcggtgcgcaacacggtg
gagagcgtccttcacggcagcgaagacgtgctgtcgttcttctttacgaacagcggctcg
gccctgcgaagggttaaaacccaggaacgtaaaaagagggtgaacggtgtttctaaagac
gtaaagtcccgtgacaatctcgtcgcactagatcacactacagattgtacaccagcatcg
aagacggacactaacgccggcgttgcgattttaaagtcacctttatttacaagtcagctt
gacgaaaaggatttctcacagtggactccactcagtttatccgacgtccacgaccccaag
acaaaccaggtctgtgtttctgaattgcagagtaaactcgccggtcctcaggtacactcc
tcagctggaaatgatgtttgtaataaatacatcgcacagtctttttcacacgcgtccgag
caacagcgggcctctcctgatcagtgtcttgagaagtctcaggggcgaaattctttcctg
gagacgtctccggcactcaccttctcaagaaaaacaaggaagtttgtgtatcgagtacaa
aatacactaaaaagtgaaaggataaacagtgtcactgatgatgttgctgaaaaacccaac
caggactcctctcaatgtcaccgcgaggaagccacagacaccagagattgttcggaaacc
acgattaaaagtcttaacttagaccctgacctcgatatgactcagctttgctgcgcgttc
gaggaggattttactcaggaactaaacatgtcaaaacctccacatgaaattagacagacc
agccgtatctcaatgccagtttgctcaacgacagaattaagcaaaacgcagcttaaaact
gaacctgcgatacagagtgaaggtcatgttgaccacctggtagacgaaggcatcagttta
acagatatacagtcgatcgagagcacggtgcgcaacagcggctgtactattggtttcagc
aaagaaacgcagtcatgcgccggtacagaacatctcaattatggctttaaaacggcaagt
aataagccaatcgtagtagctcctgaagctttagagaaagccaaagcggcgttagacgaa
tccgtagagccaacgacgcacacaggagcgaccacagcaggtacaatgcggtgcgattct
gacaaaccagagaaaacgctttcagaaagccatcaccccggacatgacgctgtaaaatct
gaggcagttgcagaggacgttcctgacacgttcgcctgggagacgaatgaatccggcttc
aagacggcatctaacaaaagtatagccatctcgactgcgaatctcgagaaagctaaagac
tttttcacgcagttagatgaagccaagtccgatacgcggctgtcgtataactgcgactcg
aaaaagagttggaaatcgtcgcagcgttccaacggtcatgaggaggacaggggttcgtca
actttgacagcatcgcaaagggcagatgtgaccgagctgtgcagtatgttagaagaggca
ggcagccagtacgagtttactcagtttaatcacacgaagatgagctcaaaatgtcctgaa
agcgtgcagctcgagagagagtttgaccccgagatactcgacggtatcgattttgacgac
agttttaactgcgatctagcagacaagcagctgacaaaaaagcatcccgctaagtcaatc
ttaaacggtctgacgagtattcaggatataaatgttaaaaacccttcatgcgctaatccg
tcggagatacccgatgacgacagtgtgcaaaggaagacttttcagtctgggttcaagact
gcgaagggaaatgctgtgatcgtctctgagaaatgtttaagcaaggcaaaaagccttttt
gcagacatcgaggatggcgacggaaatgtcggtcttgagagcgatactgctaaacaagag
aaaaatcagtcaggtgaccaccagaacaagtcttgcaggatgaccgtggaatctgatcct
gagctcaatactaggttaaatctggtatgtaacggaaaagcaaactctgtgacgaaagaa
gctaacaccacaaacgatcgagtgaatctggaaatacttcaaggagatttaatcccgagc
aacgccgtcaattttgggtttactactgcgggagggaaggaggtcaagatctcagagaaa
gctcttgaaaatgcaaagaagcttctaaatgaagccgcaaatgaaaaagattcaggaaaa
aactctgtctctcgcactccagtgcgtaatccgtctcacgcgatggcagaagtgcttcac
gattcaaagacgtctgatatatccttaccaagagatgggaaagaaaagggcccagaggta
aaacaggcagcgtttccggctcctcggtccgtggaaagtaacgggtttcaaacggccaac
ggcaaaatggtgtcggtctcggtaagcgcaatcaagaaaacgaaaaccattttcggcgtt
gttcaagacggctcaagaagagcagatgcaacggacccgaaggaagagcctgccagacta
aattttggaggagacgtgggccaacacgcgtttgccaacgggtttaagacagccagtggt
aaaggagtgagcttttccgaaaaagccttcatgaaagccaagacgttttttgaaagttgc
gatcctgattgcgtggatattcttcgagtaaaaggagacggcgcgagtaagatggatgac
cacggcttcgaggtgggtgtaagaaatgtgccgcgatcgcctggaacggaccttctgaat
agagaggagttcaagagagactccacagatcggaacgagtatgtcaaaaggaaattctcc
aagacctccggcgagactcttcaaccgcagggtttcagtacagcaggcggggccacggtg
tccgtttcagcccgagtgctaaacagagctacagcaatgctggatgatttaaacgctact
ccatctggtgaaaaaagattgcgaatatcagaaggtaaaactatttccgaagacaagaca
gatatttcagaaaaaccctgcggttttagtactgcgagcgggagaaaagttgccgtttct
gagaaagccctcgagaaagcgaagagtctttttactgactgtgacgtggatggattagga
cctgatcctggtcatctgtcagccccgaagacgtcgggagcaggtcctgagaatacgaga
tcgactgttaacattgctagtagcaagcatgttactgggtcagaaaaggaggtgacgggt
aagggtaaagatttgtttgtcacccgtgatgtcgcttcaatcaaccttgtgcaaacgaga
caaaattcaagtgaatctttaggttataataaagaatgtgtgcaagctgatgctgaaaaa
tctgaagcaagctataaaaagatggataaagacttgggatcaggaaatcccggtttcagc
acagccagcggaaaaggcgtttgtgtgtcaaagtcagccctcaaggtagctttcgagttg
ttcagggattgtaatgtagaaccggttactaatgatcaggatcaaatcatcaccaatgga
gcaaatcttaacaaaacactagttgtgccaaaggccacagacgcgagtccgtccctcgca
tcacaggccacatgtcatgatcctcccctgctcggccatcattctttaaatcttgacgga
tgtactgtaacccagcaacggtattttgagcaagaagcaatggcttgtactaaggcactt
ttagaggatgatctcaacgagaacggtttaagtggctcagatgccatcaggaaaccaagt
ccaactgtaactcaggagacatgttcagaggtgaggatgggaatgcgaaaacggacctcg
gatgggaagtctttgaccggtcaaccccctttgaaaagaagactcgtgtcagagtttgaa
cagatctcagaggacagaactgcaaatgctccggtgaaatgcagcccaaatgggagtctg
aaagacagaagagtcttcaaatacaacctgaagcccaatatcacgtgtccgtccaggaat
gttgagggcccaacaccagccaaccccggtcacctaaaaagcagaccatcagacctcagg
gctcctgtgttcatccccccatttcgaaataaccctaaatctgagacaccaaagagctgt
tttccagtaactgcggctcatgtccccagcacgtttgtcccacccgttacaaagaaagaa
gcgtcaggtagtgtttctgtgacggattcatcacaaagctctggcgattccgcaggcaca
acaacgagcaggattcactcagccgagaaacccgaggaccagaaactgaccacagacacc
ataagagaggagactctggagaatcacaccactctaccccctgaaagcaacgtcatttgg
cagcagaccttggagttagcgaaagatatgcagaacatgagaatcaggaaaaagacccgc
caaagagttcgacccctgcccggctccttttacctagcgaagacatcaggggtgagcaga
gtttccctaaaagaggctgtaggacacaagtgtcctgagctacacacagaagaacagctt
tatcagcatggtgtacccttcaaagtgtcccagatcaccagcgagaatgcagagtcgttc
cagttcagctgtgatgagtttttcaaacgcgaggttctccgagagaacggaggggtccag
ctggctgatggtgggtggctgattccagataacaggggaatgctgggtaaagatgagttt
tacagagccttgtgtgacactcctggggtcgatcccaaactgataagtgaagcttgggtg
tataaccactatcgttgggtcgtgtggaaacgagcgtccatggaaagagccttctcggaa
gtgatgggtggtcggtgtctcactccagagcaggtgctccttcagctgaaactcaggtac
gatgtcgaggtggaccacagtcgaagatcggccctgaagaagatcatggagagagacgac
accccagccaagaccatggtgctctgcgtgtgtggaattgccaaacgtgacgataatcca
gtcaggacagagggggccgtggatgccacagatcagaagtcagagtctcctgttgccatc
ctgtggctaaccgacggctggtatcaaatcaaagctctgctggaccttcctctgaccacc
atgctgcgaaagggccgtctcagagcgggcacgaaacttgtgatccatggtgccgagttg
atcggctctcaggacgcttgtcctcctttagaggctcccgattcactcatgctcaagatt
tcagccaacagtactagacgagcccgctgggacaccaagcttggcttccataaagaccct
cgacccttcccacttctactttcctcagtctttgctaccggaggagcggtgagctgtgtg
gacatcgtcgtgttgcggagctacccaacacagtggatggagaagaagccaggttcggtg
tttgtgtttcgcaacgagcgagctgaagacagagaggcagcacgctataacagcaccaaa
caaaagaccatggagcttctgttctccaaaatacaagcccagattgagaaagaagaagaa
gaaaagaagaatggcaagagaagcagaacatttagtcttaatgagattaagagcctgcag
gaaggggaggagcttcatgatgcacttgagagcgatccagcgctcgtggaggcgcatcta
agcacacagcaggtgaaggccgtaagcagctacagacgagagttaactgaaaagaagagg
gcggagctacaggaccgggtgcacaaggctgtacaggaggtcgaagggggctgcgctccg
cgagacgttactcctgtctggaaactctccatcgccgactctaacgatttgcacagcagc
cgcgtatacacactgaatatctggagaccctctgtggagttgcgctccttattaagagag
ggctgcaggtacaaggcttatcatctggccacatcagcgagcaagaaacgctcagacatt
tccaacatccagtttacggccaccaagaaaacacagtttcaggacattgaggtttgtcca
gaatggttaagtctacattttcctgcaagacaatcagtaaaattcagagatcttaagagc
cctggattcagctctccatgtggagaagtggacattgtgggatacgtaatctccatcttg
gaaaaacaaggtccgtctcctgtgctatatattgtggatgaaaaatttgatttcatctcc
gtgaggatctgcagcagcctggctgttctcgctctggaggacgtggtaaagccattagct
ctcctggctgtgagcaacctgcagctccgacagcagtctggcccggtccccggcctttat
gctggagaacaagcattattttcgacaagccccaaagaagcacacttactggaagatatt
tctcgactaaagaagtttgttgaggattatgagcatttcttcatagctgcagaagagaag
ctttccaacctgattccaacttttttcttgaactcttgtgagtccccgagaactccaggt
ttaacgtctgcgccaaaaccgaacgacagaaataatgtaacgcctcatcagacaagtcga
cttttctcccctttcaccccagtgaccaaacagactcctgtaccaaccggaaactcggac
actaaggaccctaggagtgtgaaaaggaagcgtggtatggagtacctgacacgcctccaa
aacccggcgcccctcgttcctctaggaatggtccgttctcccagagtcagtaagacgttt
aaccctcccaggaggcgcgaggcgcctcataatccccaggcagaacgaacgaacactaat
actactaggtag
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integrated database retrieval system
