Clarias gariepinus (North African catfish): 128533609
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Entry
128533609 CDS
T10780
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04137
Mitophagy - animal
cgar04140
Autophagy - animal
cgar04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128533609 (hif1al)
04137 Mitophagy - animal
128533609 (hif1al)
04148 Efferocytosis
128533609 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128533609 (hif1al)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
128533609 (hif1al)
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GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
128533609
NCBI-ProteinID:
XP_053363869
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All DBs
Position
11:18792356..18805875
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AA seq
620 aa
AA seq
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MTTTVAKRPSSEQRKVRLRDAARCRRSQETEVFYELAHSLPLSRRITSHLDKAGIMRVTL
SYLRMRHLLHSPWTKVPDTSEEEEEPTDAFYQQALAGFILVLNEEGDMVFLSENVNKFIG
ITQLELLGQCVYDYVHPCDQEELRDLLTTKPGLFKKRSESCTECNFFLRLKSTLTSRGKT
VNIKSATWKVIHCTGYMKTLNQEGEASSLGESYMTLLCEPIPHPSCVEFPLDSSTFLTRH
TMDLHFSQCDGRVTELVGYHPNDLIGRSAYDFFHALDFDHLTRSLHVLLSKGQVCTSRYR
FLAKNGGFVWTETQATVLYNSKTSQPEAVVCLNFILSAVEEADVVFSIEQTRSDLMQDKL
SVIEVEDSDDEMSSSSSSSELYHSLKDDPEDLLQLAPAPGDTIIPLTGHTELFFVPPSSP
NSVPKCPKELCTPKLRQLLSPIFDSSCPTSPDHSSGDEFPMDTGEVEKFFADKPEETQKK
KMEDMDDIDLDMLAPYISMDEDFQLTFLPQLPEADTQTPEAQITASKKRALDEEDDMPSL
TSNWEKRRKNCPIEDEFLLSRSSLMDLQVAGGLEELDPDRWKPSQLLTDRDPVLGATQAL
CDTAALMRNSFSSQPPDLMA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgacgactactgtggctaaaaggccaagctcggagcagaggaaggtacgtctgcgtgat
gcagctcgctgtaggcggagtcaggagacagaggttttctacgaactcgcccactcgttg
cccctgtcacgccgcatcacctcccacctagacaaagctgggatcatgagggtgaccctt
agctacctgcgtatgcgccaccttctccactccccttggaccaaggtaccagatacctcg
gaggaggaagaggaacccactgatgctttctaccaacaggcgctcgctggatttatcctg
gtgttgaatgaagagggagacatggtcttcctttctgaaaatgtcaacaagttcattggg
atcacacagctggagctgcttggccagtgtgtgtatgattatgtccatccatgtgatcaa
gaggagctgagagaccttcttactaccaaacccggactctttaagaaaaggtctgaaagt
tgtacagagtgcaacttcttcctgagactgaaaagcacacttacaagccgtggcaaaaca
gtgaacatcaaatcagccacctggaaggtgattcactgcacaggctacatgaagacgctc
aaccaggaaggggaagcatcatccctgggagaaagctacatgaccctgttgtgtgagcct
atcccccacccgagctgcgtggagttccctctggacagcagcacctttctcacacgccac
accatggacctgcatttcagtcagtgtgacggccgggtgacggagcttgttgggtaccat
cccaatgatctgattggccgatctgcctatgattttttccatgcacttgattttgatcat
ctgacaagaagcttgcatgtcttgctctccaaaggtcaggtatgcactagccgttaccga
tttctggctaagaacgggggattcgtttggactgagacccaggccacagtgctctataac
agcaagacttcccagcctgaagctgtggtgtgcctcaacttcatcctcagtgcggtggag
gaggcagacgtcgtgttttccatcgagcagacacgcagtgacttgatgcaggacaaactg
agtgtgattgaggtggaggactcggatgatgagatgagtagcagcagcagtagcagtgaa
ctttaccatagtttgaaggacgatccagaggatctgctgcagctggcaccggcccctgga
gataccatcataccactgacagggcatacagagttgttctttgtcccaccatccagcccc
aactcggtgcccaaatgtccaaaggagctgtgtactcccaaactccgccagctcctctca
cccatattcgacagctcttgccccacttcccctgatcatagttcaggagatgagtttccc
atggacactggtgaggtggagaagttctttgccgacaagccagaggagactcagaaaaaa
aaaatggaggatatggatgacatagatttagatatgttggcaccgtatatctccatggat
gaagacttccagctgaccttcttgccgcaattgcctgaggcagacacacagactcctgag
gcacaaatcacagcttctaagaaaagagctctggacgaggaggacgacatgccatctcta
acatccaactgggagaagagacggaagaactgccccatagaggatgagtttctgctttca
cggtcctcactgatggacctgcaggttgctggtggtttagaggagctggaccctgaccgc
tggaaaccgagtcagctcctgaccgacagagaccctgtcctgggagcaacacaagcactg
tgcgatacagcagctttaatgaggaattctttctcatcacaaccaccggatttaatggct
taa
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