Clarias gariepinus (North African catfish): 128533641
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Entry
128533641 CDS
T10780
Symbol
farsb
Name
(RefSeq) phenylalanine--tRNA ligase beta subunit
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
128533641 (farsb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
cgar01007
]
128533641 (farsb)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cgar03016
]
128533641 (farsb)
Enzymes [BR:
cgar01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
128533641 (farsb)
Amino acid related enzymes [BR:
cgar01007
]
Aminoacyl-tRNA synthetase
Class II (U)
128533641 (farsb)
Transfer RNA biogenesis [BR:
cgar03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
128533641 (farsb)
Prokaryotic type
128533641 (farsb)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA_synthFbeta
PhetRS_B1
B5
B3_4
EAD7
Glyco_hydro_77
Motif
Other DBs
NCBI-GeneID:
128533641
NCBI-ProteinID:
XP_053363902
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All DBs
Position
11:30954718..30963867
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AA seq
589 aa
AA seq
DB search
MPTVGVKRDLLFEALGKTYTDEEFDELCFEFGLELDEITSEKDIISREQGDQKAEGASDV
VLYKIDVPANRYDLLCLEGLVRGLQVFKEKIEAPRYKRVSPANGEAQRLIITEETAGVRP
YAVAAVLRNITFTPERYESFIELQEKLHQNVCRKRTLVAIGTHDLDTISGPFTYTAKAPE
EIRFRPLSQKQEYTATQLMSLYKMDSHLRHYLHIIEDEPLYPIIYDSNGVVLSMPPIING
DHSKISVNTRNVFIECTATDLTKAKIVLDMIVTMFSEYCSEPFTVEEAEVVYPDGRMFSY
PELAYRTEILSADFINHRVGINETAESVAHLLTRMCLKSEVTGEADQIRVEIPPTRSDII
HACDIMEDAAMAYGFNNITRTTPRTYTVANQLPLNKLTELLRSDLAAAGFTEALTFALCS
REDIADKLGKDIAETRAVHISNPKTAEFQVARTTLLPGLLKTVAANRKMALPLKLFEISD
VVLKDEDKDVGARNNRRLCAVYYNKTPGFEVIHGLLDRLMQLLDVKPGRNHGYHIQASED
STFFPGRCAEIFFSGKSIGRLGVLHPDVITAFDLTMPCSALDIDIEPFL
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccgtcggcgttaaacgggaccttctgttcgaggctctgggcaaaacatacact
gatgaagaattcgatgagctctgcttcgagtttggcctcgagctggacgagattacatcg
gagaaggacataatcagccgcgaacagggcgatcagaaagctgagggagcctcggatgtg
gtgttgtataaaatcgacgtcccggccaacagatatgacctgctgtgtctggagggactc
gtcaggggactgcaggtgttcaaggagaagatagaggcgccgcgttacaagcgcgtgagt
ccagcgaacggagaggcgcagcggctcatcatcacagaggagacagcgggcgtgaggccg
tacgcggtggctgcggtgctgcggaacatcacgttcacaccggagcgctacgagagcttc
atcgagttgcaagagaaactgcaccagaacgtctgcaggaaaagaacgctggttgccata
ggaacgcacgacctggacaccatctcggggccgttcacgtacacggcgaaggcgccggag
gaaatccgctttaggccgctgagtcagaaacaggagtacacggccactcagctcatgagc
ctctacaagatggacagccacctgagacattatctgcacattattgaggacgagccgctt
taccccatcatctatgacagcaacggagtcgtcctgtccatgccgcccatcatcaacggt
gatcacagcaaaatttccgtcaacacacggaacgtgtttatcgagtgcacggccacggac
ctcaccaaggcaaagatagtattggacatgatcgtgaccatgtttagcgagtactgcagc
gagccgttcacggttgaggaggcggaggttgtgtatcccgatggtcggatgttctcctat
cctgagctggcctacaggacggaaatcctgtcagcggacttcatcaaccacagagtcggc
atcaatgagacagccgagagcgtcgcgcatctcctgacccggatgtgtctgaagtcagag
gtcacgggagaggccgatcagatccgagtggaaatcccgcccactcgctccgatatcatc
cacgcctgcgacatcatggaagacgccgccatggcgtacggtttcaacaacatcaccagg
acaacaccgcgcacgtacacggtggccaatcagctccctttgaacaagttgactgagctc
ttgaggtcggatctggcagcagcgggattcactgaagctctgacttttgccctgtgttcc
cgagaggacatcgcagacaaactggggaaggacatcgcagagacgagagccgtccacatc
tccaaccctaaaaccgccgaattccaggtggcgaggacgacgctgcttcccgggctgttg
aagaccgtggctgcaaacaggaagatggcgctacctctaaaattgttcgagatctcagat
gtagtgctaaaagacgaagacaaagacgttggagcacgcaacaacaggcgtctgtgtgcg
gtttactacaacaagacacccggcttcgaagtgatccacggcctcctggaccggctcatg
cagctgctggatgtcaaaccgggtcgtaaccatggttaccacatccaggcctcagaagac
tccaccttcttcccgggccgctgcgctgaaatctttttcagcgggaaaagcatcgggcgc
ctcggcgtccttcaccccgacgtcatcaccgccttcgacctcaccatgccgtgctccgcc
ctcgacatcgacatcgagcccttcctgtag
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