Clarias gariepinus (North African catfish): 128534157
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Entry
128534157 CDS
T10780
Symbol
lamb1b
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128534157 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128534157 (lamb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
128534157
NCBI-ProteinID:
XP_053364435
LinkDB
All DBs
Position
12:20461595..20498825
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AA seq
1772 aa
AA seq
DB search
MWSLQSALIVALGLAVSAQLVPEANNMCSEGSCYPATGDLLIGRAHLLTASSTCGLYSPE
PYCIISSLETDNCFDCDSRDFYNVDTYPDSHTIDNVVTTFTPNRLVTWWQSESGVENVTI
QLNLEAEFHFTHIIMTFKTFRPAAMVIERSSDYEKSWQVXCYFALNCSAAFPHVSQGPIK
SVDEVICDSRYSNIEPSTEGEVIFRALDPAFKISDPYSQRIQNLLRITNLRVRMIKLHTL
GDDLLDGREEVKQKYYYALYDMVVRGNCFCYGHASECAPADDSERGPEGMVHGHCMCNHH
TAGLNCEKCQDFYQDAPWRPAEGRNANECKRCECNHHSHKCHFNMTMYVLSGNVSGGVCD
DCQHNTQGQHCDGCKPFYFQHPNRDKRDPNICEPCDCDIWGSLKGGLCDSVTDVMRGLIA
GQCRCKQNVEGERCDHCKQGHYGLGQDLLGCRPCSCNPLGTTPGGSPCDTETGMCYCKRL
VTGRNCDQCQPQHWGLSTDKDGCRPCDCDLGGALNNDCSPETGQCLCREHMSGRRCDNMK
PGYYFTALDHYTYEAEEAEFKPAVTVVARPLPADRPPTWTGTGFASVPEEETLQFTIDNI
PHSMKYDLLIRYEPQLPDVWEQVEIKVIRPGHPSPSAHCSATYADQQTVSLPPGSRYVQL
PTPLCLEKGQKYTVQMILALFSSNDLHHQPHILIDSIVLLPVVRDLKLFSGEADREAAWE
MFQRYRCLENSRSVQKLPMTNICKEYIFSASALLHQGAMECECDPRGSFSTVCDSIGGQC
SCRPNVIGRKCDRCAPGTLQLGPSGCRPCDCDPLGSKNAFCNSTTGQCLCLPGVYGRQCA
HCLPNHWGFPQCQPCFCNGHGEQCHPHTGQCVECRDHTTGDQCERCERGYHGNALLGSSD
RCRPCMCPDGPGSGRQFADTCYQNLNSNQLFCVCSQGYKGPRCEECASGYYGNPKVSGGR
CHPCRCNGNIDMHDPMSCDARTGTCLRCLHNTDGQACQHCRRGYYGDASRQRCQRCVCQL
LGTDHHRCADGECECDQVSGQCPCLPRVEGQHCDRCAPNTWNFQSGEGCQPCQCHPTHSS
SPSCDWKSGQCSCMPGFGGRTCQECRALFWGDPEVKCHACDCDPLGIATPQCNKTTGACV
CVEGVSGQRCDSCGRGYMGTFPDCQPCHQCFREWDVTVGELTNQTQQMVETVENLKVTGA
TAAYQDTIDSLEGGTKQLTQILEDDKAQQTLRYSQELLQQAKRMMSDLDSSLNHTEENIQ
QTSDEHSRVAEELKSLSLETQKEQESVNKTQQHVLHIKHSDPAGAVDSISEYHQQSLEAE
RQANQATTGPRSPVEQSAGLRQATEAKRDAVRGQFERRQLEDSEVLKTLNREIDQEDVFK
LSQQVCGGEKTGDSCGECGGLGCVSEDGQPQCGGQDCDGVMTQTNNAWKKTKDLDKDIMD
SLKEVEKLQRMVSAAQGRADESKVSAQDILLKANQSKARVEQTNQELRELIQQIRDFLRS
GADLERIEALSDEVLKLEMPLVAGELKNVTMEIRQHVANLTTVDTVLTDSADQAQTAERL
LQQARVISEEATQLKEEVDKVKATLGETEQFHSATEDSLKAAKTDVNYSQQQITAVDAET
VESEFMLSNATQRMLELETNMGAVKGTTQETSNNAESAQNLAAYVSEDSEKTKRKLNLEV
QPKFQSALGLMGEKATGVSDARQRAEQLQQEAKDLMTDARSKLENLNELEQTFLANQETL
AQRAQEVEELEKEAQAVLQELSQKVTVYSICQ
NT seq
5319 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtttacagtctgccctgatcgtggctttgggtttggctgtttcggctcagctt
gttcccgaagccaacaatatgtgctcagagggaagctgttaccctgccacgggtgacctg
ctgatcggcagagcccacctccttacagcctcgtccacctgcgggctctactctcctgag
ccctactgcattatcagcagtctagagactgacaattgtttcgactgtgactctcgagac
ttttacaacgtggacacgtaccccgatagccacaccatcgacaacgtggtcacaactttt
actcccaaccgtctcgttacctggtggcagtctgagagtggagtggagaatgtgaccatt
caactgaacttagaagctgaattccacttcacacatatcatcatgacctttaagacattc
cgtcccgcagcaatggtgatcgagcgttcctcagattatgagaagagctggcaggtgtaa
tgttactttgccttgaactgctccgctgcttttccacatgtttcccaaggaccaatcaag
agtgtcgatgaggtcatctgtgattcccggtactctaacattgagccttcaacagaggga
gaggtgatcttccgagcactcgatcctgcatttaagatttctgatccttacagtcaacgg
attcagaacctcctgagaataactaacctgcgggtgcggatgataaagttacacactcta
ggtgatgaccttctggatggccgagaagaagtgaagcaaaagtactactatgctctctat
gacatggtcgtccgcggcaactgtttctgctatggccacgcctccgagtgtgcaccagcg
gacgacagtgagaggggcccggaagggatggtccatggtcactgtatgtgtaatcatcac
acggctggtttaaactgtgagaaatgtcaagacttttaccaagacgcaccgtggagacct
gcagagggccgaaacgccaatgagtgcaagcgatgtgagtgtaaccatcactcacacaag
tgtcacttcaacatgacaatgtatgtgttgtcggggaacgtgagtggaggagtgtgtgat
gattgtcaacacaacacacaggggcagcactgtgatggttgcaagcctttctacttccag
catcccaacagagacaaaagggatcctaacatatgtgaaccatgtgactgtgacatatgg
ggctcgctgaagggtggtttgtgtgacagcgtgacagacgtgatgaggggacttatcgct
ggtcagtgtcgctgtaagcagaatgtggaaggagaacgctgtgatcactgcaagcaagga
cactacgggcttggccaagacttgctaggatgccgcccatgcagctgtaatcctctgggt
acaactcctggaggaagtccttgtgacacagaaacaggaatgtgttattgcaaacgtctc
gttaccggacgaaactgtgaccagtgtcagcctcagcactggggcctgagcacagataag
gatggctgtcggccatgtgactgcgatctcggaggagctctgaacaacgattgttctcca
gagacagggcagtgtctgtgcagagaacacatgtctggcaggcgctgtgataacatgaag
cctggttattatttcaccgcccttgaccactacacttatgaggcagaagaagcagaattt
aaaccggcagtgactgtagtggcgaggcctctgccagcagatcggcccccgacttggacc
ggcactggatttgccagcgtgcctgaagaagaaacactgcagtttactattgacaacatt
ccacactctatgaaatatgacttgttgatccgctacgaacctcagttgccagatgtgtgg
gagcaggtggagataaaggtgatacgtcctggccatccttctccgtctgcacattgttca
gctacttatgctgaccaacagactgtatcacttccaccaggctccaggtatgtgcaactg
cccacaccactgtgtttggaaaaagggcagaaatacacagtgcaaatgattctagcgctt
ttttcctcgaatgaccttcatcatcagccgcacatactgattgactccattgtgctgttg
cccgtggtgcgagatctcaagctgttctcgggagaagctgacagagaggcagcgtgggaa
atgtttcagagataccgctgtctcgagaacagtaggagtgttcagaaattacccatgacc
aacatctgcaaagaatacatcttcagcgcgtcagccctactgcaccagggagctatggaa
tgcgagtgtgacccacgaggctcttttagtaccgtgtgtgattcaattggtggccagtgc
tcgtgtcgtccaaatgtgatcggcaggaagtgtgacaggtgcgccccgggtaccctccag
ctcggaccttctggctgcaggccatgtgattgtgaccctctgggctcaaagaacgctttc
tgcaattcaactaccggccagtgcttgtgtttacctggggtttacggacgtcagtgtgcc
cactgtctgcccaaccactggggcttcccacagtgccaaccctgtttctgtaatggccac
ggagagcaatgtcacccgcatacaggccagtgcgtggagtgccgagaccacaccacagga
gatcagtgtgagagatgcgagagaggttaccatggcaatgcattactaggcagcagtgac
cgctgtcggccctgtatgtgtccggacggccccggaagtggaagacagtttgcagacacc
tgctaccaaaatctcaactcaaaccagctcttctgtgtttgcagccaaggatacaaagga
ccaagatgtgaggaatgtgcgtctggttactacggcaacccgaaggtgtcaggaggacgg
tgccacccatgccggtgtaacggcaacattgacatgcacgacccgatgtcctgtgatgcc
cgcacaggcacctgtctcagatgtctgcacaacactgatggccaggcatgtcagcactgt
cgccgtggttactacggagacgctagcagacagagatgccagaggtgtgtgtgccagctt
ctaggcacggaccatcacaggtgtgcagatggtgagtgtgaatgtgaccaggtgagtggt
cagtgcccgtgtctacccagagtagagggtcagcactgtgaccgctgtgccccaaacacc
tggaacttccagagtggagaaggttgccagccatgccagtgtcatcctacacactcttcc
agcccgtcctgcgattggaagtctggtcagtgttcctgtatgccaggttttggtggcagg
acctgtcaggagtgtagagccctgttctggggtgatccagaagtcaagtgtcatgcatgt
gactgtgaccccctgggaattgctacaccacagtgtaacaagacgacaggagcatgtgtg
tgtgtggagggcgtgtccggtcagcggtgtgactcctgtgggcggggctacatgggaact
ttcccagactgccagccgtgtcatcagtgcttccgtgaatgggatgtcactgtgggcgag
ctgaccaatcagacgcagcagatggtggagactgtggagaacctgaaagtgacgggtgct
acagcggcctatcaggacacgatagacagtctagaaggcggaaccaagcagctcactcag
atattagaggatgacaaggcacagcagactctgagatactctcaagaacttctgcagcag
gccaagaggatgatgtctgatctggacagctctctgaaccacacagaggagaatatacag
cagacctcagatgaacacagcagggttgcagaggagctcaaatcactcagtctggaaaca
cagaaggagcaagaaagtgttaataaaacacagcaacatgttctgcacatcaaacactcc
gacccagcaggtgcagtggacagcattagtgaatatcatcagcagtcactggaggcagag
aggcaagcgaatcaggccacgacaggtccgcgcagccctgtggagcagtcagctggtcta
cggcaagccacggaggccaaacgggatgctgtaagggggcagttcgagcgaagacaacta
gaggactctgaggtgctaaaaacattgaaccgggagatagaccaagaagatgttttcaaa
ctcagccagcaggtgtgtggtggggagaagaccggagatagctgtggagaatgtggaggc
ttggggtgtgtgagtgaggatggacaacctcagtgcggaggacaagactgcgacggtgtg
atgacgcaaaccaacaatgcatggaaaaaaactaaagatctagacaaggacattatggac
tcgctaaaagaagtggaaaagctccaaaggatggtttctgctgctcaaggccgcgcggat
gagagtaaagtcagtgcgcaggatatcctgttgaaggccaatcagagcaaggcaagagtg
gagcagaccaatcaggagctacgagagctcattcagcaaatacgagattttcttagaagt
ggtgcagatctggagcgtattgaagcactttctgatgaagttttgaagttggaaatgcca
ctcgtggcaggcgagctgaaaaacgtgaccatggagatccggcagcacgtggccaatctg
accaccgtggacaccgtcttgactgatagtgctgatcaggcacaaacagctgagagactg
ctgcaacaggcacgcgtcatcagcgaggaagctacacaactgaaggaggaagtggacaag
gtgaaggcgacgctaggtgaaaccgagcaatttcattctgcaacagaggacagcttaaaa
gcagcgaagactgacgttaactactcacaacaacaaataaccgctgtggacgcagagacg
gttgaatctgagttcatgctgagtaacgccacacagcgcatgctggaactggagacgaac
atgggcgctgtgaaagggacaactcaggaaacttccaacaatgccgaatctgctcaaaac
ctggcagcatatgtctctgaggactcggaaaaaaccaaacggaaactgaatttagaggtg
cagcctaagttccagtctgcccttggcctgatgggtgagaaagcaactggtgtatctgat
gcacgccagagagcagaacagctgcaacaggaggcaaaggatttaatgactgatgccagg
agcaaattagagaatctaaacgagctggagcagacgtttttagcgaatcaagagactctg
gcacagagagcacaagaggtggaggagctggagaaagaagcacaggccgtgctacaggag
ctcagccagaaggtcacagtatacagcatctgtcagtga
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integrated database retrieval system
