Clarias gariepinus (North African catfish): 128534617
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Entry
128534617 CDS
T10780
Symbol
cntn1b
Name
(RefSeq) contactin 1b isoform X1
KO
K06759
contactin 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04514
Cell adhesion molecule (CAM) interaction
cgar04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
128534617 (cntn1b)
04517 IgSF CAM signaling
128534617 (cntn1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128534617 (cntn1b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cgar00537
]
128534617 (cntn1b)
Cell adhesion molecules [BR:
cgar04515
]
Immunoglobulin superfamily
Contactins
128534617 (cntn1b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cgar00537
]
Others
128534617 (cntn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
Fn3_VIN3
Pur_ac_phosph_N
CsgH
Motif
Other DBs
NCBI-GeneID:
128534617
NCBI-ProteinID:
XP_053365036
LinkDB
All DBs
Position
12:33071262..33099597
Genome browser
AA seq
1026 aa
AA seq
DB search
MEAPLMLLSFFSLLSAADAIKPRFFEPRIFDKEATGFGPIFEEEPLDTVYAEDSPETKIS
MNCRVRANPPATIKWWHNNWEIKLLEQPDEHYSLVGGNLVITNPDKNKHAGKYVCVAKNV
YGVVISKEATVRFGYLNQFPTDEREAVKVKEGQGAVLLCDPPSRYPNEVIYRWIYNEFPN
FIIPDQRRFVSQTTGNLYIAKAEASDIGNYSCFVSSPTIGKSVFSTPFALVPEIEKVKRY
PADIRVRFPKTYALVGQNVTLECFALGNPLPHIRWRKLDADLPPNYEVSMNGALLHLINV
QYEDEGSYECEALNVKGMDWYRQWLYVEGAPEWAEHINDTEKDVGSELTLSCTAVGKPLP
WIRWLKDGYSYGKGELKFSSLTFEDSGMYQCVAENNWGTIYANAELRVVSCAPTFIYNPV
KKILLGAENGRVVIECKPRAAPKPRFIWKRGSETLLNSSRVFIWDDGSLEILNVTKADDG
LYTCYAENDRGKANSSGTLSIKEATKITVAPLDVEVTVGENTILQCSASYDASFDITFIW
TVDSYIINFATDYEHYEQLMDQESSGHLLIKNIQVGHAGHYICTAQSIVDNATASAKVTV
KGRPGPPGGVRVEEIKDTSVKLVWSLGSDHGSPLIQHIVQTRDFYSIDPEDWKTAVTSPM
FLDGNAETAKVTDLFPWMEYEFRVYAINDLGAGESSVPSIKIKTWDAIPTMAPTDLDGYV
GLNGELIVTWTPMKPQYFFGKKFGYIVGFKAHEDYEWKWSTVADPEARRYVYKDGIIPNT
EIQVKVKGYNNKGEGPYSLTKVVYSSESAPSEAPLDVYARQVTSTEALVWWLHVVQVPPH
WVDGYQIRYWRKYDDNEAAASRVLVHSSVNQTRLENMRPDSHYLIEVRAYNGAGLGPPSE
HCEMFTRRPPPSRHLRVYKYVSFTRKWLYIYWDHIYNYWNESYVEGYKILFRKEGERYGK
LYTTGRHYIDFPMPETGDYVIEIRARCEGGDGPISQIQVQGSAVLNSPSLCAIALLLLLS
CMNLSP
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggaagccccacttatgttgctgagttttttctctttgctttcagcagcagatgccatc
aagcccaggttttttgagcccagaatcttcgacaaggaggccacaggttttgggcccatc
tttgaggaggagcctttagacacagtatatgctgaggattctcctgagaccaaaatctcc
atgaactgcagagtgcgagccaacccgcctgccactatcaaatggtggcacaataactgg
gagataaagctactggaacagccggatgaacattacagtttagtgggaggaaacctagtt
atcaccaatccagacaagaataagcatgctggaaaatatgtatgtgtggccaagaatgtt
tatggcgtagtcatcagcaaggaggccactgtgaggtttggatatctgaaccagtttcct
actgatgagagagaggctgtaaaagttaaagaaggtcagggggctgtcctcctgtgtgat
ccaccttcccgctacccaaatgaggtgatataccgatggatctacaatgagttccccaac
ttcattatccctgatcagaggcgctttgtgtcgcagaccacaggcaacctctacattgct
aaagcggaggcctcggacatcggaaactactcatgttttgtgtctagccctaccattggc
aaaagtgtcttcagcacacccttcgctctggtgccagagatagaaaaagtgaagcgatat
cctgcagacattcgggtcaggttccctaagacatatgccctggtggggcaaaacgtcaca
ctcgagtgcttcgccctaggaaacccccttccacatattcgctggagaaagctggatgca
gacctgccacccaactatgaggtaagcatgaacggtgccctgcttcacctgatcaatgtg
cagtacgaagatgagggtagctatgaatgtgaagccctcaacgtcaaggggatggactgg
taccgccagtggctttatgtggaaggtgctccagagtgggcagagcacatcaacgacaca
gagaaagatgttggcagtgagcttactctttcctgcacggctgtgggcaagccattaccc
tggattcgctggctgaaggatggctattcatatggcaaaggggagctgaagttctccagt
ctgacttttgaagactcaggcatgtatcagtgcgttgctgagaataactggggaaccatc
tatgctaatgcagagctgcgtgtggtctcttgtgcacctacattcatttacaacccagta
aaaaagattttgttgggagctgaaaatggccgtgtggtgatcgagtgcaagccgcgagcc
gctccaaagccaaggtttatttggaaacgtggctctgaaacactcttgaactcatcccgt
gtgtttatttgggatgacgggagtctggagattctgaacgtgactaaggctgatgatggt
ttatacacatgttacgctgagaatgatcgtggaaaggccaacagctcagggactctgagt
atcaaagaggcgaccaagatcactgttgctccattagatgtggaggtgactgtgggtgag
aacaccatcctccagtgctccgcatcgtatgatgctagctttgatatcaccttcatctgg
actgtggactcgtacattatcaactttgccactgattatgaacattatgagcagctgatg
gatcaggagtccagtggacacctgctgattaaaaacattcaagttggacatgcaggacac
tacatctgtacagcacagtccattgtagataatgcgaccgcttctgctaaagtcactgtc
aaaggtaggcctggtccacctggaggagtgcgtgtggaggagatcaaagacacatcagtc
aagttggtttggagtctgggctctgatcatggtagtccactcatccagcacattgttcaa
accagagacttttactccatagacccagaggactggaaaactgcagtcacatctcctatg
ttcttggatgggaacgctgagacagccaaggtcactgacctgtttccttggatggagtat
gaatttcgggtttacgccatcaatgatctgggagcaggagagagcagtgtgccctccatc
aaaattaaaacctgggatgccattcccaccatggctcccactgatttagatggttacgta
ggcttgaacggagaactcatagtgacttggacacccatgaagccccagtacttttttggt
aaaaagtttggctatatagtaggttttaaggcccatgaggactatgaatggaagtggtca
acagtggctgacccagaggcaagacgttatgtctacaaggatggcattatacccaacact
gaaatacaagtcaaagtgaaaggttacaacaacaaaggagaaggaccctatagcctgaca
aaagtggtctactcatctgagagtgccccttcagaggcaccactggatgtctacgcccgt
caggttacctccactgaggctctagtgtggtggctacatgttgttcaagttcctcctcac
tgggtggatggctaccagatacgctactggaggaaatatgatgacaacgaggcagcagcc
tctcgtgttctggtccacagctcggttaaccagacccgcttggagaacatgcggccagac
tctcactatcttattgaggtgcgtgcatataacggagctggactcggaccacctagtgag
cactgtgagatgtttaccaggagaccacctcccagtagacatctaagagtgtacaaatat
gtcagctttactcgcaaatggctgtatatctactgggatcacatctacaactactggaat
gagtcttacgtggagggatacaagattttgtttaggaaggaaggggagcgctatgggaaa
ctctacaccactggcaggcattacatcgacttccccatgcctgagacaggagattacgta
atcgagatacgagctcgctgtgaaggaggagacggtcctatatcacagatacaggtgcaa
ggttcagccgtcctgaactctccatctctctgtgctatagctctgctgctgctgctgtcc
tgcatgaacctgagcccttag
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