Clarias gariepinus (North African catfish): 128535595
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Entry
128535595 CDS
T10780
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128535595 (srrm1)
Spliceosome [BR:
cgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
128535595 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128535595
NCBI-ProteinID:
XP_053365571
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Position
13:8845366..8860781
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AA seq
791 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKELKFAECLEKKVDMSKVNLEVIKPWITQRVTEIL
GFDDDVVVEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKLRQESLAVMKKVDEDKRDRESKEKAQSRSPKRRKSRSPVKRERKRSHS
RSPRRKPSPPALPVPSPPSHKPEPQPEPDQSESSKPEPLIQEASSTSDLVSDAKPDSVSE
VPKDVSPEKPAKTEDKPKPRDREREREKDARRDRPRHRTRSRSPRPRRRHRSRSRSYSPR
RKPSPRRRMSPRRRSPPRRPPPSRHRRSRSPARRRRSRSRSSSGSSSSRSPHKRPVKRSS
VTPPRKQPRRTDTSTSPSRRRRSPSGSNRRPPGRNESPSPAPKPRRSDLSESEEDKLGKG
AAVDSVQQRRQYRRQNQQSSSETGSSSSSSEDEGPRRSGRGPPAKNGDIRRRRSHSPVSP
RRRHRDASPRKRRSPSPRRHRSPSPRRRRSPSPPPRRRSPSPPPRRYSPPIQRRYSPSPL
PAHKRRASPSPAPPKRSSPRSSSSPPPRSRRSPPMSSSGRQSSPQGRYPPAGASPQRRGQ
SPVHGRAIRRVSRTPEPRNTQRGSQSPRPMRRQSSRSRSASPDRFPASSAGASGTLKRPA
SASPSPSPTRSASGSPPPPPPPAKKASSASRSPSPNKGSDVEVGKKKKKKKEKKHKKEKK
HKKHKKHKKEKGSAAPSGDTQDNARVEEEHESDQKKESESEVEDSLDDLEKHLREKALRS
MRKAQMSPSQS
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggatttttccgcggaaccagtgcggagcaggataaccgcttcagtaacaag
cataagaagttgttaaaggagctgaagtttgcagaatgtctggagaaaaaggtggacatg
agcaaagtaaacctggaagtcatcaagccgtggataacgcagcgcgtcacagagatcctt
ggctttgacgacgatgttgttgtcgagtttgtcttcaaccagctggaggagaagaatcca
gatggtaagatgatgcagattaacctgactggctttctgaacgggaagaacgcacgtgag
ttcatgaaggacctctggcccctgctgctgagcgctcaggagaacatcgctggaatcccg
tctgcttttctcgagcagaagaaagaggagatcaagctcagacaggagtcgctggcggtt
atgaagaaggtagatgaggataagagggacagagagagcaaagagaaagctcagtccagg
agtcccaaacggagaaaatctcgttcaccagtgaagcgcgaaaggaaacgcagccactct
cgctcgcctcgacgcaaacccagcccaccagctctgcctgtgcccagtccacccagtcac
aaacctgagccccagcctgaacctgaccaatcagagagctccaaaccggaacctctgata
caggaggcttcctctaccagtgatttggtgagcgacgcaaagccggattcagtttccgag
gttcctaaggacgtgtctccggagaaacctgcaaagactgaggacaaaccgaaaccgaga
gacagggagcgtgagcgggagaaagatgctcgtcgagatcgtccacgccatcgcacgcgg
tctcgctcaccccgcccccgacgacgtcatcggtcacgctctagatcttactcgcctcgg
cgcaaaccgagtccgaggagacgcatgtcccccagacggaggagtcccccgagacgccca
cctccttccagacacagacgtagccgctcacctgcccgcaggcgacgttcacgctctcgc
tcgtcctcaggcagctcttcctcgcgctcgcctcataaaaggcctgttaaacgcagctct
gttacaccacccagaaaacaaccacgccgcactgatacttccactagccccagtaggagg
cgccgcagtccctcgggttcgaatcggcgacctcctggacgaaacgagtcgccgtctcct
gctccgaaacccagacgatcagacctgtcagaatccgaggaggataagctggggaagggg
gcagcggtcgattccgttcagcagcggcgacagtatcgcagacagaatcagcaatcatct
tcagagactggatcatcctcctcatcctcagaggatgaaggaccaaggaggtctggaaga
gggccaccagcaaagaatggtgacatcaggaggaggcggagtcactcacccgtgtcgcct
aggagacgccaccgggatgcatcacctaggaagagacgttctccgtctcctcgacgtcac
cgctcgccttcccccaggcgtcgtaggtcaccatcacctccacccaggcggaggtctccc
tcgccccctcctcgccgctactccccgccaatccaacggcgttacagcccctcacctctt
cctgctcacaagagacgcgcttctccctcacctgctccaccgaagcgtagtagtcctcgg
tcgtcttcctctcctcctccacgttcgcgccgtagcccacccatgtcatcctcagggcgt
cagagcagccctcagggcaggtacccgcccgcaggggcgtccccacagcgacgggggcaa
tctcccgttcacggcagagccatccgcagggtgtcgcgtacacctgagccacgtaacaca
cagagaggttctcagagtccacggccgatgagaagacagtcgtctcggtcacgctctgcc
tctcccgaccgtttcccagcatcctctgcgggagcctccgggactctcaagaggccggcg
tctgcatccccatctccttctcccacccgctcagccagtggctctccacctccaccacct
cctccagccaaaaaggccagcagtgcctctcgaagcccctcccctaacaagggttctgat
gtagaggttggcaagaaaaagaagaaaaagaaggagaagaaacacaagaaggaaaagaaa
cacaaaaaacacaagaagcacaagaaggagaaaggcagcgctgcaccgtcaggggataca
caggacaacgctcgggtggaggaagagcatgaatccgatcagaaaaaggaatcagagagc
gaagtagaggacagtctggatgatctggagaagcacctgagggaaaaagctctgcgctcc
atgaggaaggctcagatgtccccctcacagtcatga
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