Clarias gariepinus (North African catfish): 128535686
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Entry
128535686 CDS
T10780
Symbol
xpo1b
Name
(RefSeq) exportin-1 isoform X1
KO
K14290
exportin-1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03008
Ribosome biogenesis in eukaryotes
cgar03013
Nucleocytoplasmic transport
cgar03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128535686 (xpo1b)
03008 Ribosome biogenesis in eukaryotes
128535686 (xpo1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128535686 (xpo1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128535686 (xpo1b)
03009 Ribosome biogenesis [BR:
cgar03009
]
128535686 (xpo1b)
03016 Transfer RNA biogenesis [BR:
cgar03016
]
128535686 (xpo1b)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128535686 (xpo1b)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
128535686 (xpo1b)
Ribosome biogenesis [BR:
cgar03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
128535686 (xpo1b)
Pre-60S particles
128535686 (xpo1b)
Transfer RNA biogenesis [BR:
cgar03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
128535686 (xpo1b)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
128535686 (xpo1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRM1_C
Xpo1
CRM1_repeat_2
CRM1_repeat_3
CRM1_repeat
IBN_N
TPR_TNPO3_IPO13_2nd
mTOR_dom
Hydrolase_3
BID
BspA_v
Motif
Other DBs
NCBI-GeneID:
128535686
NCBI-ProteinID:
XP_053365718
LinkDB
All DBs
Position
13:5362082..5386897
Genome browser
AA seq
1075 aa
AA seq
DB search
MHSSMPAVMTMLADHAARQLLDFNQKLDINLLDNVVNCLYHGVGPQQRMAQEVLTHLKEH
PDAWTRVDTILEFSQNMNTKYYALQILETVIKTRWKILPRNQCEGIKKYVVGLIIKTSSD
AASVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSE
EVFDFSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI
PLGYIFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQ
MLPLNTNIRLAYANGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLL
VSEVEETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSGSQHFDVPPRRQLYLPVLSKV
RLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIM
TEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN
KAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR
RHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHLIEK
YMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLD
MLNVYKCLSENISAAIQTNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENF
VPPLLDAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITNEIPQIFDAVFECTLNMINK
DFEEYPEHRTHFFYLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQI
LYTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEG
KISMTLNPASPMSNQAFIQEYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLR
DFLVQIKEFAGEDTTDLFLEEREASLRQAQEEKHKLQMSVPGILNPHEIPEEMCD
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgcatagctctatgccagcagttatgacaatgttagccgaccacgcagccagacagctg
ctggacttcaaccagaaactggacattaatctcctggataatgtcgttaactgcttgtac
catggcgtgggaccgcagcaaagaatggcccaggaggtccttacacatttaaaggagcac
ccagatgcgtggactcgagtggacaccatcctggaattctctcagaacatgaataccaaa
tactatgctctgcagattctggaaacagttataaaaacaagatggaagattctgcccaga
aaccagtgtgaaggaattaaaaaatacgttgtgggcctcattatcaagacgtcttctgat
gcagcaagtgtggagaaggagaaggtgtacattggaaaacttaacatgattttagttcag
atcttaaagcaggagtggcctaagcactggcccacgtttatcagcgacattgtaggagca
agccgtaccagcgagagcctctgccagaacaacatgatcatcctgaagctgctcagtgaa
gaggtgttcgatttctccagtggacagatgacccaggttaaagccaagcatctcaaggac
agcatgtgtaatgagttctcgcagatctttcagctctgccagttcgtgatggaaaactcc
cagaatgctcctttggtgcacgccaccttggaaacactgcttcgttttttaaattggatc
ccactgggctatatcttcgagaccaaactcatcagcactctcgtgtacaagttcctcaac
gttccaatgtttcggaatgtgacactcaagtgtctgactgagatcgccggtgtgagtgtg
agccagtatgaggagcaatttgtcacactgttcacgctcaccatgatgcagctcaaacag
atgctgcctctgaacacgaacatccgtctggcctacgccaacgggaaggatgacgagcag
aacttcattcagaacctcagcctgtttctctgcaccttcctcaaagagcacggccagctc
atagagaaaaggctcaacctgcgcgagacccttatggaggctctgcactacatgctgctg
gtgtccgaggtggaggagaccgagatctttaagatttgtctggagtactggaaccacctg
gcagccgagctgtacagagagagtccattcagcacctccacttccccactgctctctggc
agccagcactttgatgttccaccacgcaggcagctctatctacctgtactctccaaggtg
cgtctgctgatggtgagccgcatggcaaagccggaggaggtgctggtggtggaaaacgac
cagggtgaggtagtgcgagagtttatgaaggacacagactctatcaacctgtacaagaac
atgagagagacgcttgtgtatttgacccatttggactacgcagacacagagcggatcatg
acagaaaaacttcataaccaggtgaacgggacagagtggtcctggaaaaacctgaacaca
ctgtgctgggccatcggctccatcagcggagccatgcacgaggaggacgagaagcgattc
cttgtcactgtcatcaaggacttgctggggttgtgcgagcagaagcgaggaaaggataat
aaagccatcattgcctcaaatattatgtacatcgtaggccagtacccacgattcctgcgc
gcacattggaagttcctcaagactgttgttaacaaactgtttgagttcatgcatgaaacc
catgacggtgtgcaggacatggcgtgtgacacgttcattaaaattgcacagaagtgcagg
aggcattttgtgcaggtgcaggttggcgaagtcatgcccttcattgatgagatactcaac
aatatcaacaccattatctgtgatttgcagccacagcaggtgcatacgttttatgaagca
gtgggttacatgattggcgctcagacggatcaggctgtacaagagcatctgatagagaag
tacatgctgctaccaaaccaggtgtgggacagcatcatccaacaagccactaagaatgtt
gatatcctgaaggacccagagactgtgaaacagcttggaagcatcttaaagaccaacgta
agggcatgcaaggcagtgggtcacccattcgtaattcagctaggacgcatctatctggat
atgcttaatgtctacaagtgcctcagtgagaacatctctgcagctatccagaccaatggt
gagatggtgaccaaacagcctctaatcaggagcatgcgcacggtaaagagagaaactctt
aaactcatctcaggctgggtcagtcgctccaatgacccacagatggtcggggagaacttt
gttccacctttgctggacgccgtcctgatagattaccaacggaacgttccggcagccagg
gagccggaagtgctcagcaccatggcgaccatcgtgaacaaactgggcggtcacatcaca
aacgagattccacagatctttgacgccgtgtttgaatgcacactgaacatgatcaacaaa
gattttgaggagtatccagagcaccgcacacatttcttctacctgctgcaggcggtgaat
tcccactgctttcccgcgttcctcgcaattcccccggcacagttcaaactggtactggac
tccatcatctgggcctttaagcacaccatgagaaacgtagccgacactggtctgcagatt
ctctacacgttgctccagaacgtggcccaggaggaggcagcagcacagagcttctaccag
acatacttctgcgacatactccaacacatcttctccgtagttacggacacatcacacaca
gccggtctcacgatgcatgcatccatcctggcttacatgtttaatttagtagaggagggt
aagataagtatgaccttgaaccctgcgagccctatgagcaatcaggctttcattcaggag
tacgtggccaacttgcttaagacggctttccctcatctgcaggatgcacaggtaaaggtg
tttgtgacggggttattcagtctaaaccaggacatccctgcatttaaagagcatttaaga
gacttcctggtacagattaaggagtttgcaggtgaggacactacagatttgtttcttgag
gaacgcgaggcatctttgcgccaggcccaggaggagaagcacaagctgcagatgtccgtc
cctggaatcctcaaccctcacgagatccctgaggagatgtgtgattga
DBGET
integrated database retrieval system