Clarias gariepinus (North African catfish): 128535829
Help
Entry
128535829 CDS
T10780
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128535829 (scaf8)
03041 Spliceosome [BR:
cgar03041
]
128535829 (scaf8)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128535829 (scaf8)
Spliceosome [BR:
cgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
128535829 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
PRP38_assoc
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
128535829
NCBI-ProteinID:
XP_053365870
LinkDB
All DBs
Position
13:26911856..26940127
Genome browser
AA seq
1266 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIISTFQNLYRCPSDDKSKIVRVLNLWQKN
SVFKSDIIQPLLDMAAGLPPPSVTPVPASTAVPVNNVTPGTPATPATPANIMPSLPDWAS
QISNSDTMAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVSSFNKKLLGQFDFGAESEPIEDSKKDTATPQLPMVSESINNSLF
HQLAEQLQQQNLEQFQKQILEHHQQKSMAMESQESIFGPENSVPPAQSNIQPQLQEQEPK
LDDSIDNQQQDMDLDEGQDTVDEDMFEAEEKKTSGTRSRSHSRSRSRSPKRRRSRSRSGS
RKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKFLSVCSTTLWVG
QVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSYKIGSK
VIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNSEWEAQ
KNTEAPKEPQVQPVAAESSAASTSQNETFTQPITMMPVQIPVPQTVPAVSLVPSTFPVTM
TMPPPGFGPPPHFLRAGFNTTQPPPGFMAASGVTQSAVGAGLTSAQTSLVQPTQDGNKDS
TFGSMLPPTSTIPASFMPSGMPGAVFNHVGAQAQQNSTEKTIASAESVDTPNEITLQGMQ
TAVRSGMGLLGMHPSATLSHPLSGQRMPGLLPLDLRPNLLQGAGARFPMLMQQGLAQQAS
SLLDTSLQARARAPFPQMEHFNRVESPFARAPNPAAPAPDNMDKANNNNNNSTTASDSGG
QQEGDQDYRFPPQEKQSTGLLRTPPPEMRTEPTPVRAPLLERPSRGSMHLEGREGPGRRE
PVSSPFRAETRWGAPRGDLDERDMRGMSAGPPKSFQEERGNPNFQNRFEMRGGVAMGGVG
PGWNRGGGGGGGGGGGPFNANMHQDFDDRRRPWERQKDRDDRDFRREINDNRHRDRERDR
ERGRDRNRERERERENDKERDRERSGWAPLNSQAQPLLPLPRPSQPLLPLPTPLLNLPPS
QPESHPKPLLPHEPQLATRQAEPHPDAKLPLQPQLEKDSTGDQEKEASFSDSVHNLDSKP
EPDPKPAAELSHHSPSAPMANPSNEMQGPELSPSPLTPAGDGQTAPKEEAETGTEPELVK
TDTEET
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgttaaagcgtttaacggagagctgtactctttgaatgaatacaaacctcca
atctccaaggcaaagatgacccagatcaccaagtccgccattaaagccataaagttctac
aaacatgtggtccaaagtgtggagaagttcattcagaagtgcaagcctgagtacaaggtc
cctggtctgtacgtcatcgactcaatcgtgcgtcagtcgcggcaccagtttggccaggaa
aaggatgtgtttgctccacgcttcagcaagaacatcatcagcaccttccagaacctctac
agatgtccttctgatgataagagcaagattgtccgggtcctcaacttgtggcagaagaac
agcgtgttcaaaagtgacatcatccagcccttactggacatggcagcgggactccctccc
ccgagtgtcacacccgtccctgccagcaccgctgttccggtcaacaatgtcactccgggc
actcctgcaactccggccactccagccaacatcatgcccagtttaccggactgggcctct
cagatctccaactctgacaccatggcagcggtagcacagatcctacagagcccgcaaggg
cagcagttgcagcagctggtacagagtctgcaaatgcagcagcaaaagcctcagccgtct
ctcctgcaggcgctggacgccggtctggtggtccagctgcaggccctgactgctcagctt
acagcagccgctgcagccaacacactcaacccactcgagcagagagtctcctccttcaat
aagaaactcttgggacagtttgactttggcgcagagtctgaacccatcgaggattctaaa
aaggacacggcaacacctcagttgcctatggtttcagagtccattaacaactcgctcttt
catcagttggctgagcaactccagcagcagaaccttgaacagtttcagaaacaaatctta
gagcaccatcagcagaagtccatggccatggagagccaggagagcatctttggtcctgag
aactcggtgcctccagcccagagcaacatccaaccacaactccaagaacaagaacccaaa
ctggatgattctattgacaaccaacaacaggacatggacctggatgagggacaggacact
gtagatgaggatatgtttgaggcagaggagaagaaaaccagtggtactcgttccagatca
cactctcggtctcgctccagatcccccaagagaaggaggtcaaggtcacgatcagggtct
cggaaacgcaaacaccggaaacggtcacgctcgcgctccagagaccgaaagagaaaatct
tctcgttcgtactccagcgaacgacgagcacgggagagagaaaaggagcggcagaagaaa
ggccttcctccgatccgctcaaaatttctcagtgtgtgtagcaccacgttgtgggtgggc
caggtggacaagaaggccacacagcaagaccttacgaatcttttcgaagagtttggccag
attgaatccatcaatatgattcctccaagaggatgtgcttatatctgcatggtgcatcga
caggacgcttaccgcgcacggcagaaattgagcactggctcgtataaaattggttccaag
gttataaagattgcttgggcccttaacaagggggtgaaacaggaatacaaacagttctgg
gatgtggatctaggggtgacctacatcccctgggagaaggtcaaactggacgacctagac
ggctttgcagaagggggcatgattgaccaggaaacggtcaacagtgaatgggaagctcag
aagaacacagaggcgcctaaggaaccccaggttcagccggtggctgctgagagcagtgca
gcaagcacctcacaaaacgagaccttcacacagccaatcaccatgatgcccgtgcagatc
ccggtgccacagactgtccctgctgtcagcctggtcccatccacttttccggtcaccatg
acaatgccccctccaggcttcggtcccccacctcactttctcagggctggatttaacact
acacagcctcctccaggtttcatggccgcttccggggttacccaatctgccgtcggagcc
ggtctcacctcagcacaaacatctctggtacaaccgactcaagatggcaacaaggactcg
acgtttggatcgatgctccctccgacgagcactatcccagcaagcttcatgccctcggga
atgcctggggcagtgttcaatcacgtgggagcgcaagcacagcaaaacagcactgagaag
acgattgcatctgcagagagtgtagacacacctaatgaaataacactacaagggatgcag
actgcagtgcgcagtggaatgggtttactgggtatgcatccttctgcaaccctctctcac
cctctctctggccagaggatgcctggactgctgccgcttgacctccggccgaaccttctt
cagggagctggggctcgttttcccatgctcatgcagcaaggcctggcgcagcaagccagc
agcctcttggacacctcacttcaagctcgtgctcgagccccgttccctcagatggaacac
tttaatcgtgtagaaagtccttttgcaagggcccccaatccagcagctcctgcaccagac
aatatggacaaagccaacaacaataataataattcaacgactgcttcagacagcggaggc
caacaagaaggtgatcaggattatcgctttccaccgcaggagaaacagagcacaggcctg
ctgaggacgcctcctcctgagatgaggacggaacctacgcctgttcgagctccactgctg
gagagaccttccagaggaagcatgcacttggagggccgagagggacccgggagacgggaa
cctgtctcaagccctttcagagccgagacacgctggggtgcaccgcgcggggacttggat
gagcgagatatgaggggaatgtcagcaggaccaccgaagagctttcaggaggagcggggg
aatccgaatttccaaaaccgttttgagatgcgaggaggagtagcaatgggtggtgtagga
ccaggctggaatcggggagggggaggaggaggaggaggaggaggaggtcccttcaatgcc
aacatgcaccaggactttgatgataggcgtcggccctgggaaaggcagaaggaccgggat
gacagggactttcgcagagaaataaacgacaaccgacacagggaccgggagcgagaccgc
gaacggggtcgagataggaatcgggagcgagagagagagcgagaaaacgataaggaaaga
gacagggagcgcagtggctgggcgcctcttaattcccaggctcaacctctcctccccctt
cccagaccatctcaaccactgctgcctctaccgacacctttgctaaacctgcctccatct
cagccagagtcgcatcctaaacctctcctaccgcatgaaccacagctcgcaacaaggcaa
gctgaaccccatccagacgcaaagctccccctgcagccgcagctcgaaaaagacagcaca
ggtgatcaagaaaaggaggcctcctttagtgacagtgttcacaacctggactctaaacct
gaacctgaccctaaacctgccgccgagttgtctcaccactctccgtctgctcccatggcc
aatccttcaaatgaaatgcaaggacccgaactgtccccttccccacttacgcctgcaggt
gacggacagaccgcaccgaaggaagaagccgagactggaactgagccagagctagtgaaa
acggacactgaggaaacataa
DBGET
integrated database retrieval system
