Clarias gariepinus (North African catfish): 128536169
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Entry
128536169 CDS
T10780
Name
(RefSeq) syndecan-3-like isoform X1
KO
K06257
syndecan 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04512
ECM-receptor interaction
cgar04514
Cell adhesion molecule (CAM) interaction
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128536169
04514 Cell adhesion molecule (CAM) interaction
128536169
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128536169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128536169
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cgar04090
]
128536169
00535 Proteoglycans [BR:
cgar00535
]
128536169
Membrane trafficking [BR:
cgar04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
128536169
CD molecules [BR:
cgar04090
]
Proteins
128536169
Proteoglycans [BR:
cgar00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
128536169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Motif
Other DBs
NCBI-GeneID:
128536169
NCBI-ProteinID:
XP_053366308
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All DBs
Position
13:complement(11067395..11079560)
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AA seq
383 aa
AA seq
DB search
MRLHSAAALVVYLCLWIPVAHANEAPEDQDASGDDDEFSASGSGDDDIWIDDPVKTTQAS
PNATEAAWFTTPDAFPEDSTTTTPFIVLDNKAETSGDITEAFLPRTTENTETEAFLPRTT
EITGTEAFLPRSTENTETEAFLPRTTEITETERKIFDLIKPLGEEGETTTVNNEEQPETT
TVNNEEQPETTQPPALEPPVVPTSDSSNIEPEEEETMVYKEPEPVATEAPDMETTPLVLS
TTSESNLADTEASGDAVESTTVETNFIEDTISDKGQPVVESKQPTLTDVDFEIDNEIKPR
SQPGSGSDSEYARGSDNDSLLERKEVLAGVIAGGVVGLAFAIMLVSLMVYRMKKKDEGSY
SLDEHKHPNGGYQKPQKQEEFLA
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttcactctgcagctgcgcttgtcgtgtacctctgcttgtggatacctgttgct
catgcgaatgaagcaccagaagatcaagatgcgtcaggagacgatgatgagttctctgcg
tcaggatcaggagatgatgacatttggatcgatgaccctgtgaagacaactcaagcaagt
cccaacgctacagaggcagcctggttcacaacccctgatgcttttccagaagattctact
actactaccccgtttatcgtccttgacaacaaggctgaaacctctggcgatatcactgaa
gcctttttgccacgcacaactgaaaacacggagactgaagcctttttgccacgcacaact
gaaattacagggactgaagcctttttgccacgctcaactgaaaacacggagactgaagcc
tttttgccacgcacaactgaaatcacggagactgaacggaagatatttgacctaattaaa
ccattaggtgaggaaggtgagaccacaacagtcaacaatgaggagcagcctgagaccaca
acagtcaacaatgaggagcagcctgagaccactcaacctccagctttggaaccaccagtg
gtccccacgagtgattcatcaaacatagagcctgaggaagaggaaactatggtttataag
gaaccagaacctgtggcgactgaggcacctgatatggagaccacaccactggtgttgagt
accacatcagagagtaatctagcggatactgaagcttcgggtgatgctgttgaatccacc
accgttgagactaatttcattgaagatacaatttcagataagggacaacccgtagttgag
tccaagcagccaacattgactgatgttgatttcgagatcgacaatgaaataaagccgaga
tcacaaccagggtctgggtctgattctgaatacgcacgaggttccgacaacgatagctta
ctggaaaggaaagaagtccttgcaggtgtcattgcaggtggcgtggtgggcttggctttt
gcgatcatgcttgtttccctcatggtctaccgcatgaagaagaaggatgagggtagttat
tcactggacgagcacaagcaccccaatggaggctatcagaaaccacagaaacaggaagag
ttcctggcataa
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