Clarias gariepinus (North African catfish): 128536307
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Entry
128536307 CDS
T10780
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128536307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128536307
03021 Transcription machinery [BR:
cgar03021
]
128536307
03036 Chromosome and associated proteins [BR:
cgar03036
]
128536307
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Helix-turn-helix
ARID
128536307
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128536307
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128536307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
SR-25
Motif
Other DBs
NCBI-GeneID:
128536307
NCBI-ProteinID:
XP_053366491
LinkDB
All DBs
Position
13:865706..1081503
Genome browser
AA seq
2141 aa
AA seq
DB search
MAAQVAPVPAASNNKSKTLPGVLGQDLNSGKRAGGGIAELRGANNNTNNTTTNNNNNNHH
VDRRCEDLSRTGGSLTTSVSSSSSSSSSSSSSSSMSSGSPGVDTGGFVVNHKLKHAPGDL
HLNQFHGNQRAAQNNQESPADSQRLGGRETGLGGTPDQHMFSAVKSAEDQPCRTSEHMSK
SSRYEQGNLAPHLQASHAQGAAAGGAGAGGAGGVKTPVSDFNHYFGSSRSGPCFDQHGAQ
QGFGTLMYPATSNHHVEASPNSHEGHQKSQYGAYPGYGAAGYSNPASTQAKCAPVGAMNN
AGGFSRFPGQNQHPSGATPTLNQLLTSPGPMMRYYEYSGGKDASSQYGCGSAGWPGQRAH
PGAANSAQSATRGQVGSMDFMVMKRSQMYGMSSSPYPQQQQGVPYPSQPYGSPSTHRYPM
TMQGRGQIGMGAMPYPQQQVPAHFGQQGMGGYCPQGQPGYYGQSQQSQQPQQQTPFSQPR
TSTQQQETQESFGSRSQPAGNAGKPNHDEMGLIQQDRPSSLPDLSGSIDDLPMGTEAPLN
PAISVSGPPNSQGDQGNQSQSPFSPHTSPRVSNMRPGPSPPPVASPSPAGSNQISPTNGP
GSQLAPQTPGNLPDTGSNSSMNQIPVAQDRAFMRRSQNQYGPQQSGPPMSPHLSTRNQMQ
HGMSAYQHNSTGSYGPPSGPYGPQGNYSRHPYGGMNNANCSGLGSGMSNSLGMNASSPMH
GQGPGQPMSMSRAPGPPGNRVYLGGGNSMAPTSPSMPQSAGPGMGPPVGNVNRKTLDGPM
ATMHPTGNSAQGRQGGYCGMMGTVSSYSHQVGNATAMMSPQSCSSTTSPSGPMGEGGEVP
MSADSKQKSSSKEEVIPVAESHKPPKDGSSSQCGSEPPTPSALTPSPASLSSYHGDDSDS
ISSPAWPKTPSSPKSGSGSITNDKVSRLYEMGSEPERKSWVDRYVSFMEDRGTPVPHLPV
VGKKQLDLCKFYMTVKELGGLAMVNKNKKWRELSSALGLGTSSNAASSLKKHYIQYLFAY
ECKVERGEEPPPESCPRTDAKKQGKVEPPSPATSGSLQGPQTPQSTGSSSLPEMPSELKP
PTPATTPQGHISIPGNSNNSVSIQDPFSDCSDPAFHKRNMLSSGGSYQSALNPMDSMMRM
QYDNKDHFAGMRKAVGGEPCMPAQMTPAGMQDIYGRSPSSGPMAGLGMGQRPQYPYGQGY
DRRSDHLMGVDGSLGPHGNQSNMSHASNDGSMYSPNRYHNQQRHDGYGQQYPGMPYGVHP
PGMYPQQGYKRPLDGMYSPPAKRQEGELYGMQYGGPQTDMYSQYGGNYPERRPMQTPFPY
PYSRERLQNASQGPQHHSVQHGMMGAGHSAPTADGPTHMWPSRTDMAYSYSSRHATPSQS
SPYPGMGRIEDMDGVRTDNQWPGHQRQTPYMSGHSNSMALMYSRPPSSYQTSNHISCEPS
PGSFQRSMEGHMQPNKMAFMQSMKMHKPGMPVPSGSASGVPGQMPPNMRRDYPMGCVEGT
QPLLKPRRKMTSKDTGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVASFNLTQL
PGFLELIVEYLRRCLIEIFGILEEYEIGTLGQKTLLGPDEDEKEQDSLKSDTSCEPETSQ
EPEKNSMDSPPASSETDRELNQEGENKDEMLRNDRDEKDENRTEDIKDPLEGHSSTVPEP
RPKQASKYDKLPVKIVPKDDFMEDISDELGHVQKFDSGLLHWKAGGGDSTSYILTHFESR
EDCTTNSVQNKQHCCASKSDTYSTPVATIDVVLSPRLRDLCGEENSSTSLNSSSHSLRLF
ENQKGITLLEDEPHCPDEPPLCTKSSWQESLGKRCICVSNIIRSLSFIPGNDSEMSKHPG
LILILGRLLLLHHEHPERKRTVPSNEKDEFHKEEELKPCSRDEWWWDCLAALRENTLVTL
ANIAGQLDLSIYPESICLPVLDGLLHWMVCPSAEAQDPFPLAGPHSQLSPKRLVLECLCK
LSIQDGNVDLILATPPFSRQEKFFATLVRQAGERKLQVYREMAVAVLSNLARGDPSAARG
IAIQRNGVGNLVGFLEDGIAMTQYHQNPHSLLHMGHPPMEQPSVSMLCRAAKALLELAKV
EENRPEFVLYESRLLDIAISSVLNVSVVAVICEVLFHLGKS
NT seq
6426 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcaccagtcccggccgcgtctaataacaagagcaagactttaccg
ggggttttgggacaagatttaaactccgggaaacgcgcaggaggaggaatagcggaactg
agaggcgcgaataataatactaacaacactaccactaataataataacaataaccatcat
gtggatcggcgctgcgaggacctgagccggactggtgggagcctaacaacttcggtctca
tcctcatcatcatcctcatcatcttcatcgtcttcatcctcgatgtcgtcgggctctccg
ggtgtagacacgggtgggtttgtggtgaaccataagctgaagcacgcgcccggagatctc
catctgaaccagtttcacgggaaccagcgcgccgcgcagaataaccaggagagccctgcg
gacagtcagaggctaggaggcagggagaccgggctgggaggcacgcctgatcaacacatg
ttcagtgcagtgaaaagtgcagaagatcagccttgtagaacctcggagcacatgagtaag
agcagcaggtacgagcaaggcaatttggcaccgcatctccaagcctcccatgcccagggc
gcagcagcaggaggagcaggagcaggaggagcaggaggagtgaaaacaccggtttctgac
ttcaatcactattttggaagttcaagatcaggaccctgcttcgatcagcacggcgcgcag
cagggctttggcactttgatgtatcccgccacttctaatcatcatgtggaagcctcacca
aactcgcacgaaggccatcagaagagtcagtacggcgcgtacccgggctacggggctgcg
ggatacagtaacccggcctcaactcaggccaaatgcgctccggttggggcgatgaacaac
gccggggggttttcacgtttcccgggacagaatcagcatccatcgggagcgacccccacc
ctgaaccagctgctcacctcccccgggcccatgatgcgatactatgaatacagcggcggc
aaagacgcgagctctcagtacgggtgcgggagcgcagggtggccgggacagagggctcat
cccggggctgcgaacagcgcgcagagcgccacccggggccaggtgggttctatggacttc
atggtgatgaagcgctcccagatgtacgggatgagcagtagcccgtaccctcagcagcag
caaggtgtcccttatcccagtcagccctacggatctccttctacacacagatacccgatg
accatgcagggcagaggacaaatcggcatgggtgcgatgccatatcctcaacaacaggtt
cctgcccattttggccagcagggcatgggagggtattgtcctcagggccagcccgggtac
tacggccagtctcagcaatcccagcagcctcagcagcagacacccttcagccagcctcgt
accagcacacagcagcaggagacccaggagagctttggaagccgaagccagcctgctggg
aatgctgggaaacccaaccatgatgagatgggattgatccagcaggaccgtccttccagc
ttacctgacctgtcaggctccatcgatgacttgcccatgggaaccgaggcgcctctcaac
ccagccatcagcgtctctggtccccccaacagtcagggagaccaggggaaccagtctcag
tctccgttttcaccacacacctctcctcgtgtttccaacatgcggcctggaccctcaccc
ccaccggtagcctcccccagtcccgccggatccaaccagatctctcctaccaacggccca
gggtcccagctggcaccacagacccctgggaacttacctgacactggctccaattccagc
atgaaccagattcccgtggctcaggacagagcctttatgcgaaggagtcaaaaccagtat
ggccctcagcagtcaggaccgcccatgtccccacatctgtcaaccagaaaccagatgcag
cacgggatgagcgcctatcagcacaactccactggttcctacggccccccgagtggtccc
tacggcccacaagggaactactcgagacatccctatggaggaatgaacaatgctaactgc
agtggtttggggtctggaatgagcaacagcctgggcatgaacgccagcagccccatgcac
gggcaagggccagggcaacccatgtccatgagccgtgcccccggaccccccgggaatcgg
gtctacctgggtggagggaacagcatggcgcccacgtctcccagcatgccgcagtccgcc
ggaccgggcatggggcctcctgtaggaaacgtgaatcgtaaaactctagacgggccgatg
gcgacgatgcatccgacaggcaactctgcacaggggaggcagggtggttactgtggaatg
atgggtaccgtctcgtcatatagccaccaagtgggaaatgcgacagcgatgatgtcacca
cagagctgcagctccaccacatctccgtcaggccccatgggggagggtggagaggtgcca
atgtctgcagactccaagcagaaatccagcagtaaagaagaagtgattcctgtcgctgaa
tctcacaaacctccgaaggacggttccagctcccagtgcggctcggagcccccgaccccc
tcggccctgacccccagccccgctagtctgtcctcgtaccacggggatgacagcgacagc
atcagcagccctgcatggcccaaaactccctccagtccaaagtcaggctcgggctccata
accaatgacaaggtctctcggctgtacgaaatgggaagcgagccggagagaaagagttgg
gtggatcgctacgtgtccttcatggaggacagggggacgccggttcctcacctccctgtc
gtgggcaagaaacagctggatctgtgcaagttctacatgactgtaaaggagctgggtggc
ctggccatggtgaacaagaataaaaagtggcgcgagctttcctcggcgctcggtttgggc
acgtccagtaacgcggctagctctctgaagaagcactacatccagtacctgttcgcttat
gaatgtaaggtggagaggggggaggagcctccgcccgagtcgtgcccgcgcaccgacgcc
aagaaacaaggcaaagtggagccgccgtctcctgccacctcaggctctctacagggacct
caaacccctcagtccacgggcagcagctccctgcctgagatgcccagtgagctaaagcca
cccacaccagccacaacgccacaggggcacatcagtatcccaggcaacagcaataattca
gtcagtattcaagacccgttctcagactgcagtgatcctgcgttccataagaggaacatg
ctgagctctggaggttcttatcaatcagccctgaaccccatggactccatgatgaggatg
cagtatgacaataaggaccactttgcaggaatgaggaaagctgtaggtggagagccttgc
atgcccgctcagatgacccctgctggcatgcaggacatctatggcaggagtccctcgagt
ggccccatggcagggctgggtatgggtcagcgccctcagtacccttacgggcagggttat
gaccgcagatcagaccatttaatgggggtggacgggagtctgggtccccatggaaatcag
agcaacatgagtcacgccagtaatgatggcagcatgtactctcctaacagataccacaat
caacaacgacatgatggctacggacagcagtatcctggtatgccatatggcgtccaccct
ccagggatgtaccctcagcagggctataagcgacccctcgatggaatgtatagccccccc
gctaagaggcaagaaggagaactttatgggatgcagtatggaggcccacagacagacatg
tacagtcagtatggaggaaattatccagagcgccggcccatgcagactccctttccttat
ccgtatagccgtgagcggctacagaacgccagccaggggcctcagcatcactctgtccag
cacggcatgatgggtgccggacattcagcacccacagcagacggcccaacacacatgtgg
ccttcaaggacagacatggcctattcttactctagcagacacgcgacacctagtcagagc
tctccgtacccagggatgggacgcatcgaggacatggatggagtccgaacagacaatcag
tggcccgggcatcaacgccaaacaccgtacatgtctggtcactctaactccatggctctt
atgtattcacggcctccttcttcctaccagacctctaaccatatctcatgtgaaccgagc
ccagggtctttccagcgctctatggaagggcacatgcaacccaacaagatggccttcatg
cagtctatgaagatgcacaagccggggatgccggtgcccagtggctcggcgagtggagtc
ccaggtcagatgccacccaacatgaggagagactatccgatggggtgtgtggaagggacc
cagcctctactgaaaccgcgacgcaaaatgacctcaaaagacaccggaaccccagaagcc
tggcgagtaatgatgtcactcaagtctggtcttctggcagaaagcacatgggctctggat
acaatcaacatcctcctttatgatgacagcactgtagcatcgttcaacctgacacagctg
cctggattcctagagctcatcgttgagtatttaagaagatgcctgatcgagatctttggc
atcttggaggaatatgagatcgggactcttggccagaagactctgcttggtccagatgag
gatgaaaaagagcaagactcgctcaaatcagacacttcatgtgagccagagaccagccaa
gagccagagaaaaactccatggactctcctcctgcgtcttctgagacagaccgggagtta
aatcaggaaggcgagaataaggatgaaatgttgcgaaatgatagagatgagaaagatgaa
aatagaactgaggatattaaggatcctctcgagggccattcatcaacagtgcctgaaccc
agacccaaacaagccagcaagtacgataagctgcctgtcaagattgttccaaaagatgac
ttcatggaggatatttctgacgagcttggccatgtgcagaaattcgacagtggattactt
cactggaaagcaggcggtggtgactccacgagctacatcttaacacattttgagagtcgt
gaagattgcacaactaatagcgtccagaacaaacaacactgttgtgcttcaaagtcggac
acgtacagcaccccggttgcgactatagacgttgttctgtccccacggctgagggatctc
tgtggggaagaaaactcatccacctccttaaacagttcctcacattcattacgccttttc
gagaaccagaaagggatcactctattggaagatgaacctcactgtccagacgaacctccg
ctgtgcacaaaatccagctggcaggaatctctgggcaaacgctgcatttgtgtctctaac
attatccgcagtctctcgttcatccctggaaacgatagcgagatgtccaagcatccgggc
ctgattctgatccttggccgattgctgttgttgcaccatgagcacccggagagaaagagg
actgtccctagcaacgaaaaagatgagttccataaggaggaagaactcaagccctgcagc
agggatgagtggtggtgggactgtctggcagcgctgagggagaacactttagtcacgctg
gccaacattgcaggccagctggacctgtcgatttacccggagagtatatgccttcccgtc
ctcgacggcctgctccactggatggtgtgtccttcggccgaggcccaggacccttttcct
ttggcagggccgcattcacagctcagtccaaaaaggctggtactggaatgtctgtgcaag
ctcagcattcaggacggcaacgtagacctgatcctggccacaccgcccttcagtcgtcag
gagaagttcttcgccacactggtgcgtcaggcgggagagcgcaaactgcaagtttaccgc
gagatggcagtggccgtgctgtccaacctggctagaggggatccttcggcggcgcgcggc
atcgccattcagagaaacggtgttggcaaccttgtaggcttcctagaagatggaattgcc
atgactcagtatcaccaaaacccacacagcctgctgcacatgggtcatcctcctatggag
caacccagcgtgagcatgctgtgtcgggcagccaaagcgctgctggaactggccaaggtg
gaggagaacaggcctgagtttgtgctgtatgaaagcagactcctggatattgccatctcc
tccgtgctgaacgtaagcgtggtggccgtcatctgcgaagtactctttcatctcggcaag
tcatga
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integrated database retrieval system
