Clarias gariepinus (North African catfish): 128536316
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Entry
128536316 CDS
T10780
Symbol
pcgf5a
Name
(RefSeq) polycomb group RING finger protein 5-A
KO
K11489
polycomb group RING finger protein 5
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
128536316 (pcgf5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128536316 (pcgf5a)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
128536316 (pcgf5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAWUL
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
zf-RING_6
zf-RING_10
zf-Nse
E3_UbLigase_R4
zf-rbx1
DUF3337
zf-C3HC4_5
Actin_micro
DUF1272
TRAF3_RING
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
128536316
NCBI-ProteinID:
XP_053366501
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All DBs
Position
13:9977547..9987346
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AA seq
237 aa
AA seq
DB search
MASQRRHLIREFNRYITCSVCRGYLIKPTAVTECLHTFCKSCIVQHFEESNDCPECGIQV
HETNPLEMLRLDKTLEEIIFKLVPGLREKEEQQEMDFWRKNEARSNREEGPRAKRSRVCE
EEDDREEGEGGDYHRNDPQIAICLDCLRSNGQSGESTVKGLMKKFIRCSTRVTVGTIKKF
LCVKLKLPSSYELDVLCNGEIMGKDHTLEFIYRTRWRLQGDTEYPMVLEYRPRIDFG
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgcagaggaggcacctgatcagagagtttaaccgctatatcacctgctccgtg
tgccggggctacctgatcaaacccaccgccgtcacagagtgcctccacaccttctgtaag
agctgcatcgtccaacactttgaggagagtaacgactgtcctgaatgcggcattcaagtc
catgaaaccaatcctctagagatgctgaggttggataaaaccctggaggaaatcatcttt
aagttggtgcctggtctgagagagaaggaggaacaacaagaaatggatttctggaggaaa
aatgaagccagatctaatagggaagaaggtcccagggccaaacgctctcgtgtatgtgag
gaagaggatgacagagaggaaggtgagggaggtgattatcacagaaatgaccctcagatc
gctatctgcctcgactgcctgaggagcaacggccaatcaggagagagcacagtgaagggt
ctgatgaagaaatttatccgctgctctactcgtgtcaccgtcggtaccattaagaagttt
ctttgtgtgaagctgaagctaccgagttcatatgagctggacgtcctgtgtaacggggag
atcatggggaaagaccacaccctggaattcatctaccgaacccgctggagactacagggc
gacacagagtaccccatggtccttgagtatcgtcctcgaatagacttcggctag
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