Clarias gariepinus (North African catfish): 128536364
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Entry
128536364 CDS
T10780
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128536364 (pnn)
Spliceosome [BR:
cgar03041
]
Complex C
Other components
EJC/TREX
128536364 (pnn)
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Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128536364
NCBI-ProteinID:
XP_053366563
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Position
13:complement(27936200..27942438)
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AA seq
656 aa
AA seq
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MAVAVRALQDQLEKAKESLKNVDENIKKLTGRDPNELRPGQTRRLSLTGPGGGGRGRGIN
ILRRGLSDGGGGPAAKQRDVEGALLRLAGDQRARRDSRHDSDAEDEDDVKKPALQSSVVA
TSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESTVSTDRLKRRQEIEQKLE
VQAEQERKKVESERRELFEERRAKQTELRLLEHKVELAQLQEEWNAHNSKIIKFIRTKTK
PPLLYLPGRICSATQKLLDESQKKMNAMFDERREAFAEHLNKMEARPRRQSQRAGKKEME
SAEGRKKEEEDEEEGKQKERLTGKRHDVEMEDEDEEEAEEEMEEREGSSEVRDREVEGEK
EQKEEEEAMEKDEGKVEKEEEGEEGRVAVEDREVEEKMEVEMVVRDLEGEQQQQQEEQEK
SPEVDEVGNDRDEEKEKEQEKESLQENDIKSPKTADNDTQVQAEESKDPPVEVSSQPIMK
DSAEPGGSLEPQTHTEQPEKDVKQPQEVVMEPQEAKKPEEEEVVVDEARGRAKTQTSQSR
SQRSSSSSSTSSSSSSSSSGSSSSSSSSSSSSSASSSSSSSSRSRSRSRERRRRNSERRK
NDRSQKTSKSSGGHRDRKERSKEKDRKRTGSDGSRSGKRSSRSERDRKSDRKEKRR
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgcgagctttacaggaccagctcgaaaaagccaaagagagcttaaag
aatgtggacgaaaatataaaaaagttaactggaagggacccgaacgagttaaggccgggt
cagaccagacggctttcccttacaggcccaggtggaggaggtaggggcagaggaatcaac
atattgaggcgtggactctccgatggcggtggaggacccgcagccaaacagagggatgtt
gaaggggcactcttgaggctggcaggggatcagcgagccaggagagattcacggcatgac
agcgacgctgaggatgaggacgatgtcaaaaaaccagcgttgcagtcatcagtagtcgct
acctccaaggagcgcacacgtcgagatcttattcaagatcagaccatggatgagaaagga
aagcaaagaaatcgccgcatgtttggcctgttgatgggaacgctgcagaaatttaagcag
gagtcgacagtgtctacagacaggcttaaaagacggcaggaaattgaacagaagctggaa
gtgcaagcagagcaagagcgtaagaaagtggagagcgagagacgcgagctgttcgaagag
agacgagccaagcagacggagctcaggcttctggagcataaagtagagctggctcagctg
caagaggagtggaacgcccacaattctaagattatcaagtttattcggacaaagaccaag
cctccgcttctctacctgccaggccgcatatgttcagctacgcagaagctcctggatgag
tctcagaaaaaaatgaacgccatgtttgatgagaggcgtgaggcttttgctgagcacctg
aacaagatggaggctcggccgaggcgtcagtctcagcgtgccggcaaaaaggaaatggag
agtgctgaagggcggaagaaagaagaggaagatgaagaggagggtaagcagaaggagagg
ctgacaggtaaacgacatgatgtagagatggaggatgaggatgaggaggaagcagaggag
gaaatggaagaaagggaggggagttcagaggtcagggatcgggaggtagagggggagaaa
gaacagaaggaggaggaggaagctatggagaaggatgaggggaaggtagaaaaagaggag
gagggtgaagagggaagggtggctgtggaggatagagaggtagaggagaagatggaggtt
gagatggtagtaagggatttagagggagaacagcaacagcagcaagaagagcaggagaag
agtccagaggtagatgaggtaggtaacgacagggatgaagagaaggaaaaggagcaggag
aaggagagcctccaggaaaatgacatcaaatcccccaaaactgctgacaacgacacacaa
gtccaagctgaggaatctaaagatcctcctgttgaagtttcctcacaacccataatgaaa
gacagcgcagagccaggtgggtctcttgagccccaaacacatactgaacaaccagaaaaa
gacgtaaagcagccacaggaagtagtcatggagcctcaagaagcaaagaaaccagaggag
gaggaggtggtggtggatgaggcacggggccgagctaagacccagacatcacagagcaga
agccagaggagcagcagcagctcctccacgagctcctcgtccagttcttcgtctagcggc
tcgagctcttcctccagcagttctagcagttcttcgtctgcctcgtcgtcctcttcatcg
agctctcgatcacgcagccgcagcagagagcgtcgtagaaggaattcggaacggagaaag
aacgacaggagtcaaaagacaagtaaaagcagcggtgggcacagagacaggaaagaaagg
tccaaggagaaggacaggaagaggacgggttcagatggaagcaggtcgggaaaacggtcg
tcacgcagcgaacgggatcgcaaatctgaccgaaaagagaaaaggcgctaa
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