Clarias gariepinus (North African catfish): 128541031
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Entry
128541031 CDS
T10780
Symbol
tnrc6ba
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128541031 (tnrc6ba)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128541031 (tnrc6ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
128541031
NCBI-ProteinID:
XP_053367084
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All DBs
Position
14:complement(14325137..14345511)
Genome browser
AA seq
2006 aa
AA seq
DB search
MEDKKRKKEDKRKRESSQKVVEQKNKVPELTKTPSAQSPTVPSSVCPSPGPISSTTSSTA
TPAAGAPPQGGNNAKRSAVANGQPSPSTQAPQRYMPREVPPRFRCQQDHKVLLKRGQPPL
SSMLLGGGNSGGDSPNATVAAASDTSLGSAGPAASSLPHTSSSSSIAASSTTTNYANSMW
GVSSGSQPLSQGREKVIVDGSDLEEWPSIAAGDGARTGDKAVSGVADGNGMPNCSASWGE
RQQPKVVGGVNEGGKGVSSGSPSPPTSSSSTNECMQPSSVVWGSQGSTGGNSVAAGSLPS
ASKASPLSGTECSIGVNCGFPGANFNPNANPSAWPALVPDGAGAAVTEGGSTPLQSATSS
SANNSLSVNQASHQHQLHQMQYRDIEPSCREWGGTLLEPGAGPKNTAMTEGGDGDCGNTG
GGDLSASSSSSSTSSSTWRVQPFPANSKTGASRTDAWEGGAGGSSVSADGGNSWGFSGQD
DRGGPVGGSTWGTGSQGSWNGGVGEWGNSSSVGNPGGGNGDGSSSNSSTSGGSAGNPSVS
SSAASTMTRAWDNQKVSGDGGTGDSNEWGGQGTRGGGGTSSSSGGGNSKNGNQNHGHHRS
HQPPNAEVALQNLLNRPDLDPRVLSNSGWGQTQIRQNVAWDLEGERGTAGGARSSTSGQV
PPYSTITSTTAPSSSSLHPSQPQNTNLNSSSVLTTQSISPREGWDNSSSSSSSSSSLPNR
GAQPNRGAANSIQNSGVSQSGSGVGQLAGQNKPSVGWGEISSSENQGKGWGNEGPEWRDQ
VTGSGTSGWGDFRQQGTQVGSGEKWGNNHDEKGTGGWNEMGRGDGGNWGQKNSSEWGERE
TKATSGSWGDGKDNGGTRVDSEVGTWGSWDEGTPRKAWGAGGTDTAGVGRGGDMGSKSHL
GWGGNVHTPQMPNSQLTSLKGQAQQQQQSQPQQSESVDTGAMQGGWGRQGVSSAPSQSSG
WTSGPIPQISSGPGSSSEPSGWEEPSPQSISRKKEIDDGTSAWGDPNNYNYVNYWDKNSG
SSGQAQPMQSQHQGPPPMPGRVPTTLGNRDINVSHSSNKGPAVAPAGWGRSGSPSSPCVD
NGTAAWGKPADTSTGWGDPDDAGNASGWGNPPNPIKPGSKSMQEGWGDREGSVSASRHSS
WEEEDEASVVWNSAGSQGSSSSYNSGGWGGKKANKGSVKGSDSWMNPMTRQFSNMGLMGE
DPSSRPLDLAPGPPQDKKIDGDKRAIGLNDYNGEMRKGGRAAGGVVFRSPGSKETGPAET
GPYYDKQTLPFTNQDRCLGEEGPCSPYSPPTVFKPSPLYNHPNPPRQMGGHTFGSGGGMA
QPRHQPGMPPINPTVRAQVPHQFLSPQVPGSVLKQMPPPSGGVGAVGGGVFPPQLSPQHI
AMLSSIYPPHIQFQLACQLLLQQQPQQQQQQQQQLLQNQRKFPQNVRQQADPQQLARIMA
VLQQQRQQQQQAGSVGGTSKLSPSHLGSGSQKMPMSDSLSHPGLGGSVADLHQKSPAYSG
FGSGVNLSGLELGSIASGPGGLKESGGQQSRFKWMMEGHSPAPSPDDALHKNGPIAAPLK
RGGSPYSQYDLLGTESLGGPLQGSSDSWQRTPGNKMGTKTGTSSWPPEFQPGVPWKGIQS
VDPESDPYMTPGSMLSSSAVSSLSDTEHQLLRDNTESNPSLNTLLPSPGAWPYSASDSPL
NNAHNSAKYTEYKPSWPPEPIGHNKPWKTNRNPSQLPRPPPGLTNQKQSSVSPWAGGAPR
LGRGWGGSGGSQESRYGSGSAWSDGGASRGSCWLLLSNLTPQIDGSTLRTICMQHGPLLT
FHLGLTQGSALIRYSTRQEAAKAQSALHMCVLGNTTILAEFVSEDEVARYFAHSQGGSTS
GGGPPGPAGSSSVGAVGTVGTGSSGERERAGGGSSTTGGGGNGGGVVPAGSSWQSLDGTG
GSPDPVSVQAPGLNIFAQWSNGAGGGGASTTAAGVEPARQGLWAAMPAGYPSSSLWGTSA
LEDRHQMSSPAALLPGDLLGGGSDSL
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaagaaagaagataaaaggaaaagggaaagctcacagaaggtg
gtcgagcaaaaaaataaagtgccagaactgaccaagaccccatctgcccagtctcctacc
gtccccagctcggtctgtcccagccctggccctatctcttctacaacatcctccactgcc
accccggctgctggtgccccccctcagggtgggaacaatgctaagcggtcggcggtggcc
aatggacagccctcccccagtacccaagccccacagcgctacatgccccgtgaagtgccc
cctcgattccgttgccagcaggaccacaaagtgctactgaagaggggccagccaccattg
tcctccatgctgctgggaggaggcaacagtgggggagatagccccaatgcaacagtggcc
gctgcctcagataccagcttgggttctgcaggtccagctgcttcctctctgccccacaca
tcatcctcctcatcaatcgctgcttcttctactactacaaattatgcaaattccatgtgg
ggggtgagctctggtagccaacccctctctcagggcagggagaaggtgatagtggatggg
tcagacctggaggaatggcctagtattgctgctggggatggagccaggacaggagataaa
gctgtttcgggggttgcagatggcaatggaatgccaaactgtagtgcctcatggggtgaa
aggcaacaaccgaaggttgtgggaggagtaaatgaaggtggaaaaggtgtcagttctggt
agcccctccccacctacatcctcctcttcaaccaatgaatgtatgcagcctagtagtgtt
gtttgggggtcccagggatccacaggtggaaattcagtagcagcgggatcattgccctcc
gcatccaaagcctcccctctttcagggactgagtgctccattggtgtcaactgtgggttt
ccaggtgccaactttaaccctaatgccaatccctctgcctggccagctcttgtaccagat
ggggctggggcagctgtaacagagggtggctccactcctctccaaagtgcaacatcatcg
tctgccaacaactctctttctgtgaatcaagcctctcatcagcaccaacttcaccaaatg
caatatagagacatagagccatcctgtagagaatggggtggtacattactggagccagga
gcaggaccaaaaaacacagcaatgacggaagggggtgatggagactgtggaaatactggg
ggaggggatctttctgcatcttcatcttcttcttccacctcttcatctacttggagagtt
cagccttttcctgcaaattccaaaacgggtgcctcaagaactgatgcatgggagggtgga
gctgggggtagttctgtatctgctgatgggggaaactcgtgggggttcagtggacaggat
gacagaggagggcctgtgggtgggagtacgtggggcactggatctcagggatcatggaat
gggggagttggtgaatggggtaattcaagtagtgttggcaatccaggtgggggaaatgga
gatggctcaagcagtaacagcagcaccagtggtggtagtgctggaaacccgtcagtttct
tcctctgcagcttcaactatgacaagagcatgggacaatcagaaagtttctggagatggc
ggaacaggggactccaatgagtggggaggacaaggaaccaggggaggaggaggtacctca
tcctctagtggtggaggaaactcaaaaaatggcaatcagaaccatggccaccaccgctct
catcagcctcccaacgctgaagtggccttacagaatctgctcaaccggcctgacctggac
cccagagtgctgtctaactcgggatgggggcagacacagattcgacagaatgtggcatgg
gacttggaaggagaaagaggaacagcaggtggagccagatcttctacttcaggccaggtg
ccaccatactctaccatcacttcaactactgccccatcatcctcatctttgcatcctagt
caacctcagaacaccaacctgaactccagttcagttctcacaacccagtctatctcacct
cgtgagggctgggataacagtagtagcagcagcagcagtagttcctctctgcctaatcga
ggtgcacaacctaatcgaggtgctgctaatagtatccaaaactctggtgtttcacaatct
ggtagtggagttggtcagttagcaggccagaacaagccttcagtaggctggggagagata
agttcatctgagaatcaagggaaaggttggggcaatgagggtccagaatggcgagatcag
gtaacagggagtggaacaagtggatggggagattttagacaacagggtactcaagtagga
agtggtgaaaagtggggtaataatcatgatgaaaaagggactggaggttggaatgaaatg
ggtagaggggatgggggcaactggggtcagaaaaatagcagtgaatggggggagcgggag
accaaagcgaccagtgggagttggggtgatgggaaggataatggaggtacacgtgtagac
tcagaagtaggtacatggggaagctgggatgaaggcacaccaaggaaagcttggggagca
ggaggtactgacacagctggagttggcagaggtggggatatgggtagcaaatctcacttg
ggttggggtgggaatgtacacactccacagatgccaaacagccagttgacctctttaaaa
ggtcaggcacaacagcagcaacaatcacagccccagcagtcagagtcagtggacacaggg
gccatgcaagggggctggggaagacagggagtttcttcagccccaagccaaagttcaggg
tggacctcagggcccataccccaaatatccagtggccctgggagcagttcagagccaagt
ggctgggaggaaccctctccacagtctattagtaggaaaaaggaaatagacgatggaaca
tctgcctggggtgatcctaataactacaactatgtcaattattgggacaagaacagtggc
tcatctggacaggcacaaccaatgcagtctcagcatcagggacctccacctatgccagga
agagtgcctacaacccttggaaacagggatattaacgtctcacattcttccaataaaggc
ccggcagtggctccggccggatggggcagaagcggttctccttctagtccatgcgttgac
aatggcactgcagcttggggcaagcctgcggacacatccacaggctggggtgatccagat
gatgctgggaatgcatcaggctggggaaatccccccaacccaatcaagcctggttcaaag
tctatgcaagaaggctggggtgacagagaaggctctgtcagtgcatctcgtcactctagt
tgggaggaggaggatgaggccagtgttgtgtggaacagtgctggatcacaaggcagtagc
tcttcatacaactctgggggctggggaggcaagaaggctaacaagggttcggttaaaggt
agtgactcgtggatgaacccgatgactagacagttttcaaacatgggccttatgggtgag
gaccccagtagtcgtcctttggatctagcccctggccctccccaagataaaaagattgat
ggtgataaacgtgctataggtctaaatgactataatggagagatgcgcaaaggaggacgt
gcagctggaggagtagtcttccgttcacctggttccaaagagacggggcctgctgagact
gggccttattatgacaagcagaccttgcctttcaccaatcaggatcggtgccttggggaa
gaggggccttgttctccatattctccgcccactgtcttcaagccctctcccctctacaac
caccccaatccccctagacaaatgggtggtcatacatttgggagtggtggtggaatggca
cagcccaggcaccagccagggatgccacccattaacccaactgtgcgagcgcaagtgcct
catcagttcctgtcacctcaggtgccaggctctgtgctgaagcagatgcctcctccgagt
gggggtgttggagcagtgggtggaggagttttccctcctcagctgtccccacagcacatc
gccatgctcagcagcatctaccctcctcacatccagttccagctggcgtgtcagctgctc
ctgcagcagcaacctcagcagcagcaacagcagcagcagcagctcttacagaaccagcgc
aagttccctcagaatgtgcgtcagcaagcagacccccagcagcttgccagaatcatggct
gtactccagcagcagagacagcagcagcagcaggcaggcagtgtagggggaacctctaaa
ctttcgccatctcaccttggtagtggtagccaaaaaatgccaatgtctgattcgctgtct
caccctggactgggaggctcagtggcagacctgcatcaaaaatcacctgcctattcaggg
tttggttctggtgtgaacctgtctggtctggagttggggtccatagccagtggtcctggt
ggtttaaaagaaagtgggggtcagcaatctcgttttaaatggatgatggagggtcactcg
ccagctccatctcctgatgatgcacttcataaaaatggccctatagctgctcctctaaaa
agaggaggctccccatactctcagtatgatttgttgggcactgaaagtttgggtggcccc
ctccaggggtcctcagacagctggcagagaactcctggaaacaaaatgggaaccaagact
ggaacatccagctggcctccagaattccagccaggggtgccatggaaaggaatccagagt
gttgatcccgagtcggacccctatatgacccctggaagtatgctgagttcgtctgcagtg
tcgagcctcagtgatactgagcaccagttgctaagagataacacagaatcaaacccctcc
ctaaacaccttgctgccttcacctggtgcctggccctatagtgcctcagacagccccctc
aacaatgcacacaattcagctaagtacacagagtacaagccaagctggcctcccgagcct
attggacacaacaagccttggaaaaccaatcgaaatccatctcaactaccacgcccacct
cctggactgaccaatcagaaacagtcctctgtgtccccatgggcgggaggagcaccacga
ttagggaggggttggggtggatctggaggaagccaagaaagcagatacggatctggctca
gcatggagtgatggaggagcctcaagggggagttgttggctgttgctgagtaatcttact
cctcagattgatggttccaccctgcgcactatctgtatgcagcatggtcctctgttgacc
tttcaccttggtctaacccagggcagtgctctgattcgctacagtactcgccaagaagca
gccaaagctcagagtgcactgcacatgtgtgttctgggcaacaccacaatcctggcagag
tttgtaagcgaggatgaggttgctcgctattttgcacattcccagggtggaagcaccagt
gggggcgggccaccaggaccagcagggtcgtccagtgtaggtgcagtgggcacagtgggt
actggtagctccggagaaagggagcgtgcaggaggaggaagctctactacaggaggtggt
ggcaatgggggtggagtcgtgcctgcaggctctagttggcagagtttggatggtacgggt
ggctccccagacccggtctctgtccaggcacctggcctgaacatctttgctcagtggagc
aatggtgcggggggaggtggagcaagcaccaccgcggcgggtgtggagccggccaggcaa
gggctatgggctgcaatgccagctgggtatccgagcagcagcctgtggggaacatcagcg
ctggaggatcggcaccagatgagcagccctgcagcgcttctacctggagacctgctgggt
ggaggctctgactccctctga
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