Clarias gariepinus (North African catfish): 128541146
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Entry
128541146 CDS
T10780
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128541146 (rnf40)
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128541146 (rnf40)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
128541146 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
zf-C3HC4
zf-C3HC4_3
CC_Bre1
BRE1
zf-C3HC4_2
zf-RING_5
TPX2
zf-RING_2
zf-RING_UBOX
zf-rbx1
SpoIIE
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
128541146
NCBI-ProteinID:
XP_053367358
LinkDB
All DBs
Position
14:15865965..15880133
Genome browser
AA seq
1008 aa
AA seq
DB search
MSGTGGKRASGGDSPSGPPEKKMKKEEKTTTTLMEPIRIGGVSSTEEMDMKVIQFKNKKL
SERLEQRQAIEDELREKIEKLEKRQATDDATLLIVNRYWTQLEENVQELLQQVNPKAAPV
PAQTPVSPPASASAPDPAAAPLPAPDITAPLPTPLEGEDGLPQPPPPADEEEQQQQQQSE
QLQDQDKEQQQDQTDAPEKPQEEPVVDGIAVAPPPPPPLSESAKALLSTLDNSSEEELSL
QLQDRMQFSKGAVACIVCIFDRLHNSIEDLCTRVQAAVCEDDSQRELTATNRSLLEENNK
LQDLAFSLQGRHHKMSLEYNELVDKVTSSETKVSEMETAVEDLQWDIEKLRKREQKLNKH
LAEALEQLNSGYHASGRSGGLPGGQITLNIQKFESLNAELEQNQELANSRMAELEKLQQE
LQEAVRESEKLKMDLRNIPEEVVKETPEYKCLQSQFSLLYNESLGVKTQLDEARALLLTA
KNAHLRQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPI
NREMRHLISSLQNHNHQLKGDVQRYKRKLRETQAEINKMKCQSGDNGSMLTLEESVNDGG
LDVKKEEEDDQDEEEERRRELERQRTREREREAERERERERERERQRSEELKRKDSDTLK
MLRTELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEVDELRQRVRELEER
ERKESKKLADEDALRKLRVAEETIEHLQKKLTATKQEEEALLSEMDVTGQAFEDMQEQNS
RLMQQLREKDDANFKLMSERIKSNQIYKLLREEKEELADQVLTFKTQVDAQLLVVQKLEE
KEGILQSSLATLEKELALRTQALELNKRKAVEAAQLAEDLKVQLEHTQAKLREIQASVLE
NRTARERESGNLKRAQEDLSRLRRKLEKQKKVEMYTDADEILQEEINQYKAKLRCPCCNT
RDKETVLTKCFHVFCYECLKTRYDTRQRKCPKCNAAFGANDFHRIYIT
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcactgggggtaagcgagcctctggaggggacagtccttccgggccacctgaa
aaaaaaatgaaaaaagaggagaaaaccacaaccacccttatggagcctattcgtattggt
ggtgtttcttctacggaggaaatggacatgaaggtcattcagttcaaaaacaagaagctc
tctgagcgcctcgagcagcggcaggctatcgaagatgagctgagagagaaaattgagaag
ctggaaaaaagacaggcaactgatgatgccacgcttcttatcgtcaaccgatactggact
cagctggaagaaaatgttcaagagttactgcagcaagttaaccctaaggctgctccagtg
cctgcacagaccccggttagtcctccagcatctgcctcagcccctgatcctgcagctgcc
cctttgcctgcccctgatattactgctcccctaccaactccactagaaggagaagatggc
cttcctcagcctccacctccagcagatgaggaggaacagcagcagcaacagcagtctgaa
cagctgcaggaccaggataaggaacagcagcaggatcaaacggacgcgcccgagaaacca
caagaagagcctgtagtagacggaattgctgtagccccacctccacctccccctttgagc
gaaagtgcgaaggctttgctctccactctggataacagcagcgaagaggagcttagcctg
cagctacaggaccggatgcagttcagcaaaggtgcagtggcctgcatagtctgcatcttt
gaccgcctgcacaacagcattgaggatctgtgtacccgtgttcaagcagcagtatgtgaa
gatgacagtcaacgagagcttactgccacaaatcgcagtctactagaggagaataataaa
ctacaggatcttgctttctcactgcaaggaagacaccacaaaatgtcactggagtataat
gaactagttgataaagtaaccagctctgagacaaaagtgtctgagatggagacagctgtg
gaggacctgcagtgggacatagaaaaacttcgcaaaagagagcagaagcttaataaacac
ctagcagaggccctagagcagctgaattcaggctaccatgcctctggcaggtccggtggc
ctacctggtggtcagattactcttaacatacaaaagtttgagtcactaaatgcagagctg
gagcagaaccaggaactggccaatagccgcatggcagagcttgagaaactgcagcaggag
ttacaggaggcagtaagggaaagtgaaaaactcaagatggaccttcggaacattccagaa
gaggtggtgaaagaaacaccagagtacaagtgtctccagtctcagttctctctgttgtat
aatgagtctctgggagtgaaaacgcagctggatgaagctcgggctctgcttcttactgcc
aaaaatgctcacctgcgccagatagagcacatggagagtgacgagttgtctcttcagaag
aagttgcgaactgaggttattcagttggaggatacattagctcaagtgcgcaaggaatat
gaaatgctacggattgagtttgaacagaaccttgctgccaatgagcaagcaggcccaatt
aacagagaaatgagacacttaatcagcagccttcagaaccataaccaccagctcaagggg
gatgtgcagagatacaagaggaagttacgtgaaacccaagctgagatcaacaagatgaag
tgccagagtggagacaatggaagcatgctaactttggaagagagtgtgaatgacggagga
ctggatgtgaaaaaagaggaagaggatgaccaagatgaggaggaggaaaggaggagagag
ctggagaggcaacgaacccgggaacgtgagagagaggcagagagggagagagagagagag
cgagaacgggaaagacagcgaagtgaagagctgaagagaaaagactcagacacactgaag
atgcttcgaacagagctcaagaaagcacaggagtcacagaaggagatgaagctgctacta
gacatgtacaagtctgctccaaaagagcagagagacaaagtgcagctcatggcagctgag
cggaaatcaaaagcagaggtggatgagttgaggcagcgagttcgagagttggaggaaagg
gagaggaaagagagtaagaagctggctgatgaagatgctctgaggaagcttcgtgtggca
gaggagactatcgaacatctgcaaaagaagcttactgccactaagcaggaagaggaagcc
ttgcttagtgagatggatgtgacgggtcaagcctttgaggatatgcaggaacagaacagt
cgtttaatgcagcaactgcgtgagaaagatgacgccaattttaaactgatgagtgagagg
atcaaatccaaccagatctataaactgctgagagaggagaaagaagaactggctgaccag
gtgctcacctttaaaactcaggttgatgctcagttgctggttgtgcaaaaactggaggaa
aaggaaggtatcctacaaagctcactcgctacactggagaaagagttagcactacgtaca
caagctctagaacttaataagcgtaaagcagtggaagcagctcagctggctgaggattta
aaggtgcagctggaacacactcaggccaagctgagggagatccaggcctcagtgctggaa
aaccgcactgcacgtgaaagggagagtggaaacctcaaacgtgcacaggaggacctgtct
agactccgccgaaaattggagaaacagaagaaggtggaaatgtatactgatgcagatgag
atcctgcaagaagaaattaatcaatacaaggctaagcttcgttgtccctgttgcaatacc
cgggataaggagactgtgcttacaaagtgtttccatgttttttgttacgagtgcttgaag
acccgctatgacactcggcagaggaaatgtcccaagtgcaatgctgcttttggagccaat
gacttccatcgcatttacatcacttaa
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integrated database retrieval system
