Clarias gariepinus (North African catfish): 128541209
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Entry
128541209 CDS
T10780
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03020
RNA polymerase
cgar03420
Nucleotide excision repair
Brite
Enzymes [BR:
cgar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128541209 (polr2a)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128541209 (polr2a)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128541209 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128541209
NCBI-ProteinID:
XP_053367488
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Position
14:28961795..28977830
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AA seq
1959 aa
AA seq
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MHGPPSSDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFINKIMKVLRCVCFFCSKLLVDAN
NPKIKDILTKSKGQPQKRLLHVYDLCKGKNICEGGEEMDNKFGVEQQENDEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDHILGMDPKF
SRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERDEVMNLLMFLSSWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFRFDCTNERALRRTLQEDVLKEVMTNAHVQSALEKEFEKMRED
REILRAIFPSGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVHELSKKLVI
VNGDDPLSKQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAFDWLLGEIETKFNQSIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTENKKKTII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNLPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSP
RYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSP
TSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKYSPTSPT
YSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccactgcgcctcatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtccgtcaccgaagggggcatcaag
taccccgagaccacagagggaggacgccccaaactgggcggcctcatggacccccgacag
ggggtcatcgagaggtctgggcgatgccagacgtgtgcaggtaacatgacggaatgcccc
ggtcacttcggtcacatcgagctggccaagcctgtctttcacgttggcttcatcaataag
atcatgaaagttctccgctgtgtttgtttcttttgctccaagcttctggtcgatgcgaac
aacccgaaaatcaaagacatcctgacgaagtcgaaaggtcagcctcaaaagcgcctgttg
cacgtctacgacctgtgtaaaggtaaaaacatctgtgagggcggggaagagatggacaac
aagttcggagtggagcagcaggagaacgatgaggacctcactaaagagaagggtcacggt
ggatgtgggcggtatcagccccgtattcggcgctcaggcctggagctgtacgccgagtgg
aagcacgtgaacgaagactctcaggagaagaagatcctcctcagccccgaacgtgtgcac
gagattttcaaacgcatctcagacgaagaggatcacatcctcggtatggatcccaagttc
tcccggcctgagtggatgatcgtcaccgtgctgccggtgccgcctctcgccgtcagaccg
gccgtggtcatgcagggctcggccaggaatcaggacgatttgacgcacaagttagccgac
attgtgaaaatcaacaaccagctccggcggaacgagcagagtggtgctgccgcccacgtc
atcgcagaagacgtcaagctcctgcagttccacgtggccactatggtggacaatgagctg
cctggcctgcccagagcgatgcaaaaatccggtcgtccactcaaatccatcaaacagagg
ctgaaggggaaagaaggtagagtgcgaggaaacctgatggggaagcgtgtggacttctcg
gcccgaaccgtcatcacgcccgatcctaacttgcagatcgaccaggtgggcgttcctcgc
tccatcgctgctaacatgaccttcccggagatcgtcacaccatttaacatcgacagactc
caggagctcgtgcgaagagggaacagtcagtatcccggagccaaatacatcatccgtgat
aacggagaccgaattgaccttcggttccacccgaaaccaagtgaccttcaccttcagatc
ggctataaggtggagagacacatgtgcgacggtgacatcgtcatctttaacagacagccc
accttgcacaaaatgtctatgatgggtcacagggtccgaatcctgccttggtctacgttt
cgactcaacctcagcgtaacgactccgtacaacgccgactttgacggagacgagatgaac
ctgcacctgccccagtcgctcgagacgcgagccgagatccaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacagacctgtcatgggtattgtgcaggacacgctc
accgccgtgcgcaagttcaccaagcgagatgtcttcttggagagggatgaagtgatgaac
ctgctgatgttcttgtcctcctgggacggcaaagtaccgcagccagccatcttaaagcca
cgcccgttgtggaccggcaagcagatcttcagcttgatcattccaggtcacattaacgtg
atccgtacacacagcacgcatccggatgacgaggacagcggcccgtataagcacatctct
ccaggagacacaaaggtgatcgtggagaacggagagctgatcatgggcatcctgtgtaag
aagtccctcggaacctccgcaggttcccttgtccacatctcctaccttgagatgggtcat
gacatcacccgtctcttctactcaaacattcagactgtcgtcaacaactggctgctcatc
gagggtcactctattggtatcggtgactctatcgctgatgcaaagacttatcttgacatt
cagaacaccatcaagaaggccaagcaagatgtgatagaggtcattgagaaagctcacaac
aacgaactggagcccactcccggtaacactctgagacagacctttgaaaaccaggtgaac
cgtatcctgaatgacgctcgagacaagacaggatcttccgctcagaagtccctgtctgag
tacaacaacttcaaatccatggtggtggccgggtccaagggctccaagattaacatctca
caggttatcgctgtggtagggcagcagaacgttgagggtaaacgaatcccatttggcttc
aagcaccgcactcttcctcacttcatcaaggatgattacggtcctgagagtaggggtttt
gtagagaattcgtacctcgccggtctgacgcccacggagttctttttccacgccatggga
ggaagagagggtcttatcgatacggctgtgaaaacagccgagacaggttatatccagcgc
cgtctgatcaagtctatggagtcggttatggtgaaatacgacgccacagtgaggaactct
attaaccaggtggtacagctgagatacggagaggacggcctggcaggagaggctgtcgag
ttccagaacatggccacacttaaaccatcccacaaagcttttgagaaaaagttcagattt
gactgcactaatgagcgagccctccggcgtacgctacaggaggacgtgttgaaggaagtg
atgaccaacgcacacgtgcagagcgctctggagaaggagtttgagaaaatgagggaggac
cgagagatcctgagagctatttttccctcaggagacagcaaggtggtgctgccgtgcaac
ctggcccgaatgatctggaacgcacagaagattttccgcatcaacccaagaactccaaca
gatctcaacccattaagagtggtggagggtgtgcatgagctgagtaagaagctggtgatc
gtgaatggtgacgatccgttgagcaagcaggcccagcagaacgccacgctgctctttaac
atccatctccgctccacactctgctccagacgcatgaccgaagagttccgtctcagcacc
gaggccttcgattggctcctgggagagatcgagacaaagtttaaccagtcaattgttcac
ccgggtgagatggtgggtgctctggccgctcagtctctgggtgagcctgccactcagatg
accctgaacactttccattatgccggtgtgtcggctaaaaacgtcaccctgggtgtacct
cgactcaaagagctgatcaacatctcgaagcgccccaagaccccgtctctgacagtgttc
ctactgggccaggcggcacgcgacgccgagcgcgccaaagacatcctgtgtcgcctggaa
cacaccacgctgcgcaaggtcacggccaacaccgccatctactacgaccccaacccccag
agcacggtggtgtccgaggatcaggagtgggtgaacgtttactacgagatgcccgacttc
gacgtgacgcgcatctcaccctggctgctccgtatcgagctggaccgcaaacacatgacc
gaccgcaagctctcgatggagcagatcgctgagaagatcaacgcaggttttggcgacgat
cttaactgcatcttcaacgacgataacgcagagaagctggtgctgcgtatccgaatcatg
aacagcgacgagaataagttccaagaggacgaggaggtggtggataagatggacgacgac
gtgtttctacgctgcatcgagtccaacatgctgacggacatgaccctacagggcatcgaa
cagattagcaaggtgtacatgcatctccctcaaaccgagaacaagaagaagacaatcatc
acagaggagggagagtttaaagctctgcaggagtggatccttgagacggacggcgtcagt
ctgatgagagtcctcagcgagaaggacgtcgacccagtcaggaccacttccaacgatatc
gtggagatcttcactgtgctcggtatcgaggcagtgcgtaaggctctggagagagagttg
taccacgtcatctcattcgacggttcctatgtgaactaccgccatcttgctctcctgtgc
gacaccatgacctgcagaggtcatctcatggccatcacccgtcacggcatcaacaggcag
gacacaggcccgctaatgaagtgctcttttgaagagacggtggatgtcctgatggaagcc
tcgtcacacggggaatgtgatcccatgaagggcgtgtctgagaacatcatgctcggacag
ctggctcccgcaggcaccggttgcttcgacctgctcctggatgctgagaaatgcaaatac
ggcatggaaattccaaccaacctccccggcatcagcgtggctggaccaactggaatgttc
tttggctccgcccccagccctatgagtggcatgtctccagccatgacgccctggaacacg
ggagccactccagcgtacggtgcatggtctcccagcgtcggaagtggaatgaccccaggg
gctgctggattttctcccagtgccgcctccgacgccagcggcttttctccgggttactcc
cccgcgtggtctcctacaccgggctctccagggtctcctggtccagccagtccttacatt
ccctctcctggtggagccatgtctcctaactattcccccacgtctccggcatacgagccg
cgctctcctggaggctacaccccacagagtccgggctactccccgacctcgccatcatac
tcccccacttctccgtcttattccccaacttctccctcctactcccccacgtctccatct
tactccccgacctcgcccagctattcgcccacgtcgccctcttactctcccacgtctccc
tcttattcgcccacctctccatcctactctccgacgtctccttcgtactccccgacttca
ccctcctactcgcccacgtctcccagctacagcccgacgtccccgtcgtactcccccacc
tctccatcgtactcaccaacctccccctcctactcgcccacttccccctcgtactccccg
acatctccttcgtattccccgacgtcaccctcgtactccccgacgtctcccagttacagc
ccgacgtcgcccaattacacgcccacttcgcccagctactcgcccacctccccgtcctac
agccccacttcaccttcgtattcacccacgtctccgaattacacgcccaccagcccgaat
tactccccaacgtctccgtcgtactcccccacgtctccgtcgtactccccgtccagccct
cggtacacgccccaatctcccacgtacaccccgagctcgccgtcgtacagcccgagctcg
ccgtcttactcccccacgtctccgaagtacacgcccacttctccgtcgtacagccccagc
tctccagagtacaccccaacttcacccaagtactcgcccacgtcgcccaagtactcgccc
acgtctccgaagtacagcccgacgtctccgacttactcgcccaccacgcccaaatacagc
cccacgtctccgacttactctcccacgtctcctacgtacaccccgaccagccccaagtac
tcacccacgtcgcccacgtactccccgacgtctccgaaatactccccgacctcgcccacg
tactcgcccaccagtcccaaaggctctacctacagcccgacctcgcccgggtacagtccg
acgtccccaacgtacagtccggccatcagccccgacgacagcgacgaggaaaacaactaa
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