Clarias gariepinus (North African catfish): 128541219
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Entry
128541219 CDS
T10780
Symbol
drosha
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128541219 (drosha)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128541219 (drosha)
03009 Ribosome biogenesis [BR:
cgar03009
]
128541219 (drosha)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128541219 (drosha)
Enzymes [BR:
cgar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
128541219 (drosha)
Messenger RNA biogenesis [BR:
cgar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
128541219 (drosha)
Ribosome biogenesis [BR:
cgar03009
]
Eukaryotic type
90S particles
RNase
128541219 (drosha)
Prokaryotic type
rRNA processing factors
128541219 (drosha)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
128541219 (drosha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
128541219
NCBI-ProteinID:
XP_053367518
LinkDB
All DBs
Position
14:complement(3861511..3921136)
Genome browser
AA seq
1293 aa
AA seq
DB search
MSFHPGRGCPRGRPPPQNYPPVPLRLPPPQPVAPSVPPPYPYDPSAPHCSTFNPQCTNTY
MPSMPPRPEFPPYPVPAPSQGPQCPMRPPFPPPPVHQGFPEPPNFPPPPLPVSTGGLAPS
QGSYPYVPPPPPPTMPPSVPFQPPYSMNYPPQPHLPPLPPNFYPPSESGSFKPVEHFHHF
KSDKSPERPRRHKSYGYGGYSGHGERRERGRSPDRRRQEGGRYRAESERGRTPPRHRSRE
RSRERYRHRDSRSSPPSDRHRKRARSRSGSRERKRGRMEEDRERERDRERDRERERERER
ERRVEAAGGNREKSYKETEDEEEEELLKPAWIRCTHAENYYSNDPMDQVGDSTVVGTSKL
RDLYERFEEELGRRQERAKSSRPKWDPPKTKLDLDHDESSSDSECDSDGDSSCSSSSDSE
VFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEETVKP
CRPMNNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSLFSHTPLTSIPLCRV
IRFNIDYTIHFIEEMAPENYCVKGLELFSSYLFQDILELYDWNLTDPEECESPACQRFHF
MPRFVRFLPDGGKEVLSMHQVLLYLLCSSKPLVPEEEIANMLQWEELEWQKYAEECKGMI
VTNPGMKPSSVRIDQLDREQFNPNVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLR
HLLANSPKVKQIDKQKLTQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAM
MLPVLTHHIRYHQCLMHLDKLIGYTFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCG
IRQPKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTS
VHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMA
NCFEALIGAVYLEGGLEEAKQLFGRLLFNGEDLREVWLNYPPHPLQVQEPVTDRQLIETS
PVLQKLTDFETAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEY
LFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRTKTLADLL
ESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDI
PLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQK
RFIERKYRQELKEMRRERERQERESDDAEDARK
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttcaccctggacgcggatgtccacgaggacgccctcctcctcagaattacccc
cctgtccccctgcgtttgccccctcctcagcccgtcgcgccctccgtgccccctccgtac
ccctatgacccctcagccccccactgttccactttcaaccctcagtgcaccaacacctac
atgcccagcatgcctcctcgtcctgaattccctccctaccctgtcccagcaccctcccag
ggtccgcagtgccccatgcgacccccttttccacccccaccggtccatcagggcttccca
gaaccccctaattttcccccgccccctttgcctgtctctacaggtggcctcgccccttct
cagggctcgtatccttatgtcccgcctcctcctccccctacgatgcctccctctgtaccc
tttcagcctccttattccatgaattacccccctcagccccacttaccacctttaccccct
aatttctaccccccttctgaatccggttccttcaagcctgtagagcattttcaccatttt
aagagcgacaaatcgcccgaacggccacggcgtcacaaaagctacgggtatgggggatat
agtgggcacggagagcggcgggaacgagggcggagtccagacaggcgacgacaggaagga
gggcggtaccgggcagagagcgagagaggccggactcccccaagacaccggagcagagag
cgcagcagagaacgctatcggcaccgggacagcagaagctctcctccatcggaccgacac
aggaaacgagcacgcagccgctcaggaagcagagaaagaaaacgtggacggatggaggag
gaccgagagagagaaagggaccgagaacgcgacagggaaagagaacgggagagggagagg
gagaggagggtggaggctgcaggaggaaaccgagagaaaagctacaaagagacagaggac
gaagaagaggaagagttactgaagccggcgtggatccgctgcactcacgccgagaactac
tactccaacgatccaatggaccaagtgggcgactccacagtcgtggggacgagtaaactc
agagacctgtatgagcgctttgaggaggagcttggacgaaggcaggaacgcgccaaatcc
tcccgtcccaagtgggatccaccaaaaaccaagctggatctggaccacgacgagagctcg
agcgattcggagtgtgactcggacggggacagcagttgctccagcagctccgactcagag
gtgttcgatgtgatcgcagagatcaagcggaagaaagcgcaccctgaccggctgcacgac
gagctgtggtacaacgacccgggacagatgaatgacggtccattgtgtaagtgcagcgct
aaggccagacgcacaggaatccggcacagcatttaccccggggaagagaccgtgaagcca
tgtcgtccaatgaacaacaacgccggcaagctcttccattacagaatcactgtgtctccg
cccaccaacttcctgacggatcggccgacggtgatcgagtacgacgatcacgagtacctg
tttgaaggattttctctcttctcacacactcctctcactagcatcccgctgtgcagagtg
atccgcttcaacatcgactacaccatccacttcatagaggagatggcgcctgagaactac
tgtgttaaaggtctggagcttttctcttcatacctcttccaagacatcctggagttgtac
gactggaacctcacagatccagaggagtgtgagtctccggcctgccagaggtttcacttc
atgcctcggtttgtccgattcttaccggacggtggtaaggaggtgttgtctatgcaccag
gtgctgctgtatctcctctgcagtagtaaacctctggttcctgaggaggagatcgctaac
atgctccagtgggaggagctcgagtggcagaaatacgcagaggagtgtaaaggaatgatc
gtcactaaccccggcatgaaacccagttcggtgaggatagaccagttggatcgggaacag
tttaatccgaacgtcatcacatttccaatcatcgtccattttggaatccggccagctcag
ctcagctacgccggagaccctcagtatcagaaactgtggaaaagctatgtaaaactgcgc
cacctgctggccaacagccctaaagtgaagcagatcgacaaacagaagctcacgcagaga
gaggaagctctgcagaagatcagacagaagaacacgatgaggagggaagtgacggtggaa
ctcagcagccaaggcttctggaaaaccgggatacgatccgacgtatgccagcatgctatg
atgctcccggttctgacccaccacatacggtaccaccagtgcctgatgcacctggataag
ctgataggttacacctttaaagagcgatgcctcctgcagctggccatgactcacccgagt
catcacctgaacttcgggatgaaccctgaccacgcacgcaattctctgtccaactgcggc
atccggcagcccaaatacggcgacaggaaagtccaccacatgtacatgaggaaaaaaggg
attaacacgctgattaacatcatgtcccggctgggtcaggacgaccccacaccttccagg
attaatcataatgagcgtctcgagtttcttggtgatgctgttgttgaatttctaaccagt
gtccacctgtactacctgtttcccagtctggaggaaggaggattggctacatatcgcacc
gccatcgttcagaatcagcacctcgccatgctggctaagaagttggaactggaccgcttc
atgctgtacgctcatgggccggatctgtgccgagagtctgacctcagacacgccatggct
aactgctttgaggctcttataggtgctgtgtatctggaaggtgggttagaagaggcaaag
cagctgtttggcaggctgcttttcaacggcgaggacctaagagaggtttggctcaactac
ccacctcatccactacaggtgcaggagccggtgacagacagacagctcatcgagacgtca
cccgtcctgcagaagctgacagactttgagacagccatcggcgttctcttcacacacgtg
cgtctgttggctcgagccttcacgctgcgcaccgtcggcttcaaccacctcacactaggt
cacaatcagaggatggagtttttgggagattccatcatgcagctcgtagccactgagtat
ctgttcatccatttcccagatcatcatgaaggccatttgacgctcctgcgcagctcattg
gtgaataacagaactcaggcgaaggtggcggaggaattggggatgcaggagtacgcaata
acgaacgacaagaccaaacgacccgtcgctctgcgcaccaaaacactagccgaccttcta
gagtcctttattgcagcactttacatagacaaagaccttgaatttgttcacacgtttatg
aacgtctgcttcttcccaagattaaaggagtttatccttaatcaggactggaatgatccg
aagtctcagctccagcagtgctgcctcactctgcgcaccgagggcaaggagcccgacatc
ccactctacaagacgctccagacagtcgggccgtctcacgctcgcacctacacggtcgct
gtgtacttcaaaggagagaggatcggctgtgggaaaggaccgagcatacagcaggctgag
atgggagccgccatggacgctctggagaaatataacttccctcagatggcccatcagaag
cgcttcatcgagcggaagtaccgccaggagctaaaggagatgaggagagagagagagcgg
caggagcgcgagagcgacgacgccgaggacgctcgcaaataa
DBGET
integrated database retrieval system
