Clarias gariepinus (North African catfish): 128541497
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Entry
128541497 CDS
T10780
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128541497 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128541497 (dhx8)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128541497 (dhx8)
Spliceosome [BR:
cgar03041
]
Complex C
Other components
Step II factors
128541497 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
T2SSE
PhoH
TsaE
Sigma54_activ_2
nSTAND_NTPase5
Presenilin
Flavi_DEAD
Cas3-like_C_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
128541497
NCBI-ProteinID:
XP_053367925
LinkDB
All DBs
Position
14:complement(15090468..15105728)
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AA seq
1197 aa
AA seq
DB search
MADLGEDELKKLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEKHPTFDNFKSVLIKN
GAEFTDSLVSNLLRLIQTMRPPAKASTSKGSEPVVKPKNEKDRLKEMFPALCRADNPITR
TMLDEDDVKVAADAMKELEMFMPSVKTTDSKSSKQRSEASSSKKSRRSRSRSRDRDRKRR
HRSRSRSRSRSRSAERERRKRRTRWHSRSRSRSPGRGDKEKGSERWRDKHVDRPPPEEPA
VGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKV
LSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGGEGQEESAMRNPDRPTNLNLGHAPEVED
DTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVE
EEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQREAEMDSIPM
GLNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRE
SLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTARGKIGCTQPRRVAA
MSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPDTVIKYMTDGMLLRECLIDPDLGQYAIIM
LDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYP
VEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPD
VPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQK
VYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRT
NLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEF
PLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEGDHL
TLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRV
QKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMR
EVTTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggccgacctcggtgaggatgaactgaaaaaacttgaatatttgtctttagtgtctaaa
gtttgtaccgagcttgacaaccacttgggaatcagcgacaaggaccttgctgagtttgtc
atcagcctagcagaaaagcacccaacatttgataattttaagtcagtgctgatcaaaaat
ggagcagagtttacagactcacttgttagcaatttgctccgtctcattcaaacaatgcga
ccacctgcaaaagcgtcgactagtaaaggaagtgagcctgtggtcaagccaaagaatgaa
aaagaccggttaaaggagatgtttcctgccttgtgcagagctgataatcccatcaccaga
actatgctggacgaggatgatgtaaaggttgcagctgatgctatgaaagagctggagatg
tttatgcccagtgtcaagaccacagactctaagagcagcaaacagagatctgaagcgagc
agcagcaagaagagtcgaagaagcaggagccgaagtcgggacagggacagaaagagacgc
caccgctctcgttctcggtcgcgttccagatctcgctctgctgagagggaaaggagaaag
cgcaggactcgctggcattcccgcagcagatccaggagtccaggccgaggggacaaagag
aaaggctcagagcgctggagggacaaacatgtggaccgtccgcccccagaggagcctgct
gtgggagacatctacaatggcaaagtcaccagcatcatgcagtttggttgctttgtgcag
cttgaagggttgaggaaacgctgggagggcttggttcatatttctgagcttagaagagag
ggcagagtggcaaatgtggcagacgtagtcagcaaaggtcagagggtgaaggtcaaggtg
ttgtccttcacaggttctaagaccagcctgagcatgaaggatgttgaccaggaaacaggt
gaggacttaaatcctaacagaagaaggaatgttggtggtgagggtcaggaggagtcagcc
atgaggaatccagacagacccaccaaccttaacctgggtcacgctcctgaggtcgaggat
gacacactagaacgcaagagactgaccaaaatctctgatcctgaaaagtgggaaataaaa
caaatgattgctgcgaatgttttgtccaaagaagaatttccagactttgatgaggagaca
ggaatcctgcctaaagtagatgatgaagaggatgaggacctggagattgaactggtggaa
gaggagccacctttcttaagaggacacaccaaacagagcatggatatgagtcctgtgaaa
atagtgaagaaccctgatggctcgctgtcacaggcagccatgatgcaaagcgctctagct
aaggaaaggcgggaagtgaagcaggctcaacgtgaggctgaaatggactccattcctatg
ggcctaaacaagcactgggtggatcctctacctgacgctgatggcaggcagatcgctgct
aacatgcggggtattggcatgatgcccaatgacatcccagagtggaagaagcacgctttt
ggtggcaataaggcctcatatggaaagaagacacagctgtccatcattgagcagcgagag
agtctgcccatctacaagcttaaagagcagctcattcaggccgttcacgataaccagatc
ctcattgtaattggagagacgggctcagggaagaccacacaaatcacccagtacctagct
gaggctggatacacagcacgtggaaagattggctgcacacagcctagaagagtggctgcc
atgtctgtggctaaaagagtgtcagaagaatatggttgttgtttgggacaggaagtgggc
tacactatccgttttgaggactgtacaagtcccgacacggtcatcaagtacatgacagac
ggtatgctcctgagagagtgtcttattgaccctgatctaggtcagtacgctatcattatg
ctggacgaggctcacgagaggaccatccacaccgacgtgctcttcggcttgctcaagaag
acggtacagaaacgcacagacatgaagctaattgttacatctgctacactggatgccgtg
aagttctcccagtatttctacgaggcccccattttcacgatcccaggtcgtacgtatcca
gtagaggtgctctacactaaagagcctgaaacagattacttggatgccagtctaatcacg
gtcatgcagatccacctcactgagccaccaggtgatattctggtgtttttaacgggtcaa
gaggaaatcgacacagcttgtgagatcctgtatgagcgaatgaaatcactgggccctgac
gtaccagagctgattatactgcctgtgtactctgcactgcccagtgagatgcagaccagg
atctttgacccagcgccacccggcagtagaaaggtggtcattgcaacaaacattgctgag
acttctctgaccattgatgggatctactatgtagtggatccaggttttgtcaagcagaag
gtgtacaattcgaaaaccggcatagaccagcttgtggtgacccccatctctcaggcccag
gctaagcagcgagccggacgtgcaggtagaacggggcctggcaagtgctatagactgtac
acagaacgtgcatacagagatgagatgctcaccaccaatgtgcctgaaatccagaggact
aacctggccagcactgtgctttcgcttaaggctatgggcattaacgacctgttatcattc
gacttcatggatgctcctcctatggagacgctaatcacagcaatggaacagctgtacacg
ttaggagctctggacgacgagggcctactcactcgtctcggacgcaggatggccgagttt
cctctggagcccatgctgtgtaagatgctcatcatgtctgtccacctgggctgcagtgaa
gagatgctgaccatagtttccatgctctctgtgcagaatgtcttctataggccaaaggac
aaacaggctctagctgaccagaagaaggctaaattccaccagcctgagggagaccacctc
actttactggctgtgtacaactcttggaagaacaacaagttctccaatccctggtgctac
gagaactttatccaggctcgctcattacgccgtgcacaggatatccgcaagcagatgttg
ggcatcatggaccgacacaagttggatgtggtatcatgtggcaaggccacagtacgtgtg
cagaaggcaatctgcagtggtttcttccgtaacgctgctaagaaagaccctcaggaaggc
tataggactcttatagaccagcaggtggtttacattcacccctcgagcgctctcttcaac
cgacaacctgagtgggtggtatatcatgagctggtgttgaccaccaaagagtacatgcga
gaggtgaccacaatcgacccacgttggctggtagagttcgcgccggccttctttaaagta
tccgacccaactcgactcagcaagcagaagaaacagcagcgtctcgagcctctttacaac
cgttatgaggagcccaacgcctggagaatttccagagccttccgcagacgctag
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integrated database retrieval system
