Clarias gariepinus (North African catfish): 128541619
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Entry
128541619 CDS
T10780
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128541619 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128541619 (smarcd2)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128541619 (smarcd2)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128541619 (smarcd2)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128541619 (smarcd2)
PBAF complex
128541619 (smarcd2)
GBAF(ncBAF) complex
128541619 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
128541619
NCBI-ProteinID:
XP_053368101
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All DBs
Position
14:3030630..3045487
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AA seq
499 aa
AA seq
DB search
MASRAGFSAPPGPQVLNPVMNSPGHPRMAAMNPAYRVMPSPATQYPRPGVPPVRSMPMGG
MGSMGSPMAGPSYGGAMGVRPGMPQATLDPARKRLLQQQQQQQQAGGMMGPRRGLKRRKM
ADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKRKLRIYISN
TCTPAKPEGEESEKVASWELRVEGKLLEDPGKQKRKFSSFFKSLVIELDKELYGPDNHLV
EWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRASIM
QALWLYIKNNKLQDCHEKEYINCNRYFRQIFACHRMRFSEIPMKLAGLLQHPDPIVINHI
ISVDPSDQKKTACFDIDVEVDDPLKSQMSSFLSSTTNQQEIAALEMKIHETIESINQLKT
QRDFMLSFSNNPQDFIQDWLKSQSRDLKLMTDTAGNPEEERRSEFYQAPWIQEAVGRYVF
SKVQQRRQELEQVLGIRLT
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccgagcggggttctctgctccacccggcccccaagtgctcaaccctgtgatg
aactctcccggacacccgcggatggcagcgatgaacccggcctaccgagtgatgccgagt
ccggccactcagtatccgcgtcctggcgtccctcctgtgcgaagcatgcccatgggtggg
atgggttccatgggttctccgatggccgggccgtcgtacggtggcgccatgggtgttcgg
cctggcatgccccaagccaccttggacccggctcgcaagagactcctgcaacagcaacaa
cagcagcagcaggcgggggggatgatgggacctcggcgtgggctgaaacgacgcaaaatg
gctgacaaggttctaccccagaggatccgggacttggttccagagtctcaggcctacatg
gaccttctggcatttgagaggaagctggaccagaccatcgctcgcaagcgcatggagatc
caggaggccatcaagaagcccatcacgcaaaagcgtaagctgaggatctacatctcaaac
acctgcacgcctgccaaacctgagggcgaggagtctgagaaagtggcatcatgggagctt
cgagtggagggcaaactcctggaggatcctgggaaacaaaagagaaagttttcttccttc
tttaaaagcctggtgattgagctggataaggagctgtacggtccagacaaccacctggtg
gagtggcacaggatgcccaccactcaggagacggatggctttcaggtgaagaggcctgga
gacgtgaatgtgaaatgtacgctgctgctcatgctggaccaccagccgccgcagtacaaa
ctggacccgcggttagcgcgtctcctgggcgtccacactcagactcgcgccagcatcatg
caggcgctttggctgtacattaagaacaataagctgcaggactgccacgagaaagaatac
atcaactgcaaccgctacttcagacagatcttcgcctgccacagaatgaggttctccgag
atccccatgaagctagctggactcctgcagcacccggaccccatcgtcatcaaccacatc
atcagcgtggacccgagcgaccagaagaagacggcctgcttcgacatcgacgtagaagtg
gacgatccactaaagagccagatgagcagcttcttgtcctcaaccaccaaccagcaggaa
atcgcagccctggagatgaagatccatgagaccatcgagtcgataaaccagctgaaaaca
cagcgagacttcatgctgagcttcagcaacaaccctcaggacttcatccaggactggctc
aagtctcagagtcgagacctcaagctgatgaccgacactgccgggaacccagaggaggag
aggaggagcgagttctaccaggctccctggatccaggaggccgtgggccgctacgtattc
tccaaggtccagcagaggagacaggagctggagcaggtactcggtatccgcctcacctga
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