Clarias gariepinus (North African catfish): 128541726
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Entry
128541726 CDS
T10780
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128541726 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128541726 (msh2)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128541726 (msh2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
128541726
NCBI-ProteinID:
XP_053368255
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Position
14:complement(22061147..22070585)
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AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASETGFLNYYFSMHEKPDTTVRIFDRSDYYTVHGKDALFAAKEVFKT
NGVIKMLGAGSRRLESVVLSKMNFEAFVRDLLLVRQYRVEVYRNKSGSKSSKDHDWQIAY
KASPGNLTQFEEVLFGSGGGLGEGAAGVVGIRVGTGSDGQRVVGVGYVDGILRKLGVCEF
SDNDQFSNLEALLVQIGPKECVLPVGDTAGDLGKLRQVVQRGGILLSDRKKAEFTTKDIV
QDLNRLLKARKGETVSSAALPEMEKQIAMSCLAAVIKYLDLLSDEANFSSFKMTTFDLNQ
YMRLDNAAVQALNLFQASSDDPTGTHSLAGLLNKCRTPQGQRLVSQWLKQPLMDKNKIEE
RLDLVESFVEDSELRQSCQEDLLRRFPDLNRLAKKFQRQNANLQDCYRVYQAVGQLPALV
LALERHAGKHQVLLNAAFITPLNDLVSDFSKFQDMIETTLDMNQIEHHEFLVKPSFDPTL
SELRESMDQLEKSMQAALNSAARELSLDAGKTIKLESNAQIGYFFRVTCKEEKTLRNNKK
FTTLDVQKNGVRFTNSKLSSLNDEYTKSKEEYEEAQNAIVKEIISIAAGYVDPLQILNDV
VAQLDAVVSFAVVSHAAPVPYVRPTILEKGTGRLVLKGARHPCVEAQDDVAFIPNDVTFT
KGKEMFHIITGPNMGGKSTYIRQVGVIVLMAQVGCFVPCDVAEVSVVDSVLARVGAGDSQ
IKGVSTFMAEMLETSAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFC
LFATHFHELTSLAQQVSTVNNLHVTALTTDNTLTMLYRVKPGVCDQSFGIHVAELANFPK
HVIAYAREKALELEEFQDLSTLDDDAGPEAKKRCLEKKDSERIIEDFLRKVKALPIQDMT
DEAIKTELRKLKAEVVSHNNAFVNNIVSRTEKSTLE
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgcaaccaaaacagaacttgtccatggacagcgcgtccgaaaccgggtttcta
aactattatttttccatgcatgaaaagccggacaccacggtgagaatatttgatcgcagc
gactactacacggtgcacggaaaagatgctctctttgctgctaaagaagtcttcaagacg
aatggtgttattaaaatgctcggcgcaggcagcaggaggctggagagtgtggtgctcagt
aagatgaacttcgaggcgttcgtgagagacctgctgctggtcaggcagtaccgtgtggaa
gtgtacaggaataagtcaggaagcaaaagcagcaaagatcacgactggcaaatagcctac
aaggcctctccaggaaacctgacccagtttgaggaggttctgtttggtagcggtggaggt
ttaggggaaggtgctgctggagtggtggggatccgtgttggaacaggaagcgatggacag
cgtgtcgtgggtgttggttatgttgatggcatcctccggaagcttggtgtgtgtgagttt
tcagataacgaccagttctccaatctggaagctcttctggtgcaaatcggccccaaagag
tgtgtgcttcctgtcggagatacggcgggagacctgggtaaactgagacaggtggtgcag
cgtggtggcattctgctctctgacaggaagaaggcagagtttacaaccaaagacatagtt
caggatctgaaccgtttgctgaaggcacgtaagggagagacggtgtctagtgcagcgctc
ccagagatggagaaacagattgctatgtcctgcttggctgctgtcataaagtatctggat
cttctttctgatgaggccaacttcagttccttcaaaatgaccacatttgacctcaaccag
tacatgcgactcgacaacgcagctgtgcaggcacttaacctcttccaggcttcctctgat
gatccaacaggtacacactccctggcaggacttctgaacaagtgtcggacacctcagggc
caacgactggtcagccagtggcttaaacagcctctgatggacaaaaacaagatcgaggaa
aggctagaccttgtggagagctttgtggaggactcggagctgaggcagagctgccaggag
gacctgctgcgccggttccctgacctgaatcgccttgctaagaaatttcagcggcagaat
gccaacctgcaggactgttatcgtgtgtaccaggctgtgggtcagctgcccgcactggtc
ctggccctggagagacatgcaggaaaacatcaggttctgctgaatgccgcattcattacc
cccctcaatgaccttgtctctgacttctccaagtttcaggacatgatagaaactacactg
gacatgaaccagattgagcaccatgaatttctggtcaaaccctccttcgaccccacgctg
agtgaattaagggagagcatggaccagctggagaaaagcatgcaggcagctctgaacagt
gcagcacgagagcttagtttggatgcgggtaagacgataaagctggaatccaatgcacag
ataggatacttcttccgtgtcacctgcaaagaagagaaaaccctgcgcaacaataagaaa
ttcacaacgttggatgtgcagaagaacggagtgcgcttcaccaacagtaagctgagctca
ttaaatgatgagtacaccaaaagcaaggaagagtacgaggaggcccagaatgccatcgta
aaagagatcatcagcattgctgctggctatgtcgacccactgcagatactgaatgacgtg
gtagcacagctggatgcggtggtgagctttgcagtcgtatcccatgcggcccctgtgccc
tatgtgaggccgacgatactggagaagggtaccggcaggttagtcctgaagggagcacgt
catccatgtgtcgaagcccaggatgatgtggctttcatccccaatgatgtgaccttcact
aagggaaaggagatgttccacatcattacaggtccaaatatgggtgggaagtccacctac
atccgtcaggtgggcgtcatcgtgctgatggctcaggttggctgcttcgtgccatgtgat
gtagcagaggtgagtgtggtggacagtgtcctggcgcgtgttggtgcgggggacagccag
attaaaggagtgtccacattcatggctgagatgctcgagacatctgctatcttacgttct
gccactgaggattctctgattataattgatgagctaggaagaggcacttccacatacgac
ggctttggcttggcttgggccatttcggagtacattgctacgcgtctgaagtccttctgc
ctgtttgccactcacttccatgagctgacctctttagcacagcaagtgtctactgtgaac
aacctccatgtcactgcactgaccaccgacaacactctcaccatgctctacagggtgaaa
ccgggtgtgtgtgaccagagctttggaattcatgtggctgagctggcaaacttccccaaa
catgtcattgcttatgcccgggaaaaggctttggagcttgaggagtttcaggatttgtcc
acgcttgatgacgatgctggacctgaagctaaaaagcgttgcctggagaaaaaggatagt
gagaggatcattgaggatttcctgagaaaggtgaaggcattgccgattcaggacatgact
gatgaggcaatcaaaacagaactgcgcaaactcaaggctgaggtggtctcccacaacaac
gcctttgttaataacatagtttcacgtactgagaaatctacactggaataa
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