Clarias gariepinus (North African catfish): 128541922
Help
Entry
128541922 CDS
T10780
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128541922 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
128541922 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128541922 (thoc5)
03041 Spliceosome [BR:
cgar03041
]
128541922 (thoc5)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128541922 (thoc5)
Spliceosome [BR:
cgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128541922 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF2542
Motif
Other DBs
NCBI-GeneID:
128541922
NCBI-ProteinID:
XP_053368342
LinkDB
All DBs
Position
2
Genome browser
AA seq
715 aa
AA seq
DB search
MEKKRRDMSSDPLKKRKTKVIRSDGGTPEPKRVRGEGDQAGVPVLLSSVGQKKLLSVRTQ
THIDVRAYNEEVELEGRDPEQDYALYKNTCEALATLMGEIQELKAGGAKEGSAEVEAKRR
QGCVHFITLKKLNRLSHMRLKKARDQTHEAKQKVDVLHLQLQNLLYEVMHLQKEIGKCLE
FKSQHEEIDLVSVDEFFKEAPAEISRPHLTKDDPHQLTLARLDWELEQRKRLAEQYKSSL
CSKEKILKGIELKKEYLGSLQPGLQAIMQASLPVQEYLSMPFERVQKQVEVARHLPPPLY
VLFVQAGAYGQACDKNLSVSISGDVDEAKALSRPPEDSQDDESDSDAEEEQQNTKRRRGT
VGVQLDDKRKEMLKRHPLSLCVDLKCKDGSVLHLFFYYLMNLNILTMKAKVSACADLSGA
ISAGELLNPESLLNCLYANDDGQETPNPTNRYQFDKVGITTFADYVSELGHPYIWVQNLG
GLQFSSDIPQVEAARSSLSASHMERTIKLLRGRLLSRLALHKQFSSLEHSIIPVSTECQH
LFPAKVVSRLARWTMMNYQDFLELGFVQHVVNAGLVRETDLFFMAVVERGTARLQAAVVL
NPRYPEVTPLFSLSLHWKGERSGRTDDNLRALESEVNVFRSELLGPRPGLQLLTNQIQRL
CVCLDVYLETESQVCDGSEGPREFPREKMCLRSARGPNRLKPFKYNHPQGFFSHR
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaagaggcgagacatgtcttccgaccctcttaaaaagcgcaagactaaagtg
atccggagtgatggaggcactcctgaacctaaacgggttcgaggtgaaggagaccaggca
ggggttccagttctgctcagctctgttggccagaagaagctgttgtcagtgaggactcag
actcatatagatgtacgtgcatataatgaagaggtggaactggagggtcgagaccctgaa
caagattacgccctgtataagaacacctgtgaggcactggctacactaatgggggaaatc
caagaactaaaagccggtggagcaaaagaagggagtgcagaggtcgaagcaaaacgcagg
caaggatgtgttcactttattaccctaaagaagctgaatcgtctgtcacacatgaggctt
aagaaagcacgggatcagacacatgaggcgaagcagaaagtggacgtgttgcacctacag
cttcagaaccttctctatgaggtcatgcatcttcagaaagaaatcggcaaatgcctcgag
ttcaagtcccagcatgaagagatcgatttagtcagcgttgatgagttctttaaggaggcc
ccggctgaaatctctcgtcctcatctcaccaaagacgaccctcaccagctcacactcgct
cgactggactgggaactggagcagagaaagaggttggctgaacagtataaaagctcactg
tgctctaaggaaaagatcttgaaaggaattgaattgaagaaggaatacctgggaagtctt
cagccaggactacaggccatcatgcaggcgtctttgcccgtgcaggagtacttatccatg
ccatttgagcgtgtgcagaaacaggttgaagttgcacggcaccttcctcctcctctgtat
gtgctgtttgtgcaggccggagcttatggacaagcctgtgataaaaatctatctgtgtct
atcagtggagatgtggatgaagccaaggcgttgtctcgaccccccgaggactctcaagat
gatgagagtgactctgatgcagaggaggagcaacagaacactaaacgacggcgtggtaca
gttggtgttcagcttgatgacaaacgtaaagaaatgctgaaacggcatcctctctcattg
tgcgtcgacctcaagtgtaaagatggcagcgtgttgcacctgtttttttattacctgatg
aacctcaacattcttactatgaaagctaaagtttcggcctgtgcggacctctctggggcc
atcagcgcaggggagcttctaaatcctgaatctctgttgaactgcctgtatgctaatgat
gatggccaagaaacccccaatcctaccaaccgctaccagtttgacaaagtgggcatcaca
acttttgctgattatgtgtctgaacttggacatccgtacatctgggtgcagaatcttgga
ggattgcaattttccagtgacataccgcaggtggaagcggcacgcagttctctcagtgcc
agtcatatggagagaaccataaagctcctgagaggacgtctgctgtctcgactggctttg
cacaaacaattcagctctctagagcacagcataattcctgtctccactgagtgccagcat
ctcttcccagctaaagtggtctctcgcttggctcgctggactatgatgaactaccaggat
tttctggagttgggctttgttcagcatgtggtaaatgctggcctggtgagggagactgat
ctgttctttatggcagtagtggaaaggggaacagctcgtcttcaggctgcagtggtgttg
aatcctcgctatccggaggtcactcctctcttctcgctgtcgctgcactggaaaggagag
cgcagtggccgcacagacgataacctgcgggcattggagagcgaggtaaacgtgtttagg
tctgagctcctgggacctcgaccagggcttcagctattgaccaaccagatccagcgtctc
tgtgtgtgtctggatgtttatctggagactgaaagccaagtgtgtgatggctcagagggc
ccaagagaatttccaagagaaaagatgtgcttacgctctgccagggggccgaatcgtctg
aagccttttaaatacaaccaccctcagggctttttcagtcatcgttaa
DBGET
integrated database retrieval system
